commonmeta-py 0.37__tar.gz → 0.38__tar.gz

{commonmeta_py-0.37 → commonmeta_py-0.38}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: commonmeta-py
-Version: 0.37
+Version: 0.38
 Summary: Library for conversions to/from the Commonmeta scholarly metadata format
 Home-page: https://python.commonmeta.org
 License: MIT

{commonmeta_py-0.37 → commonmeta_py-0.38}/commonmeta/__init__.py

@@ -10,7 +10,7 @@ commonmeta-py is a Python library to convert scholarly metadata
 """
 
 __title__ = "commonmeta-py"
-__version__ = "0.37"
+__version__ = "0.38"
 __author__ = "Martin Fenner"
 __license__ = "MIT"
 

{commonmeta_py-0.37 → commonmeta_py-0.38}/commonmeta/constants.py

@@ -612,3 +612,14 @@ INVENIORDM_IDENTIFIER_TYPES = {
     "W3ID": "w3id",
     "Other": "other",
 }
+
+
+CROSSREF_FUNDER_ID_TO_ROR_TRANSLATIONS = {
+    "https://doi.org/10.13039/100000001": "https://ror.org/021nxhr62",
+    "https://doi.org/10.13039/501100000780": "https://ror.org/00k4n6c32",
+    "https://doi.org/10.13039/501100007601": "https://ror.org/00k4n6c32",
+    "https://doi.org/10.13039/501100001659": "https://ror.org/018mejw64",
+    "https://doi.org/10.13039/501100006390": "https://ror.org/019whta54",
+    "https://doi.org/10.13039/501100001711": "https://ror.org/00yjd3n13",
+    "https://doi.org/10.13039/501100003043": "https://ror.org/04wfr2810",
+}

{commonmeta_py-0.37 → commonmeta_py-0.38}/commonmeta/utils.py

@@ -1076,11 +1076,21 @@ def from_curie(id: Optional[str]) -> Optional[str]:
 
 def issn_as_url(issn: str) -> Optional[str]:
     """ISSN as URL"""
-    if issn is None:
+    if normalize_issn(issn) is None:
         return None
     return f"https://portal.issn.org/resource/ISSN/{issn}"
 
 
+def issn_from_url(url: str) -> Optional[str]:
+    """ISSN from URL"""
+    if url is None:
+        return None
+    match = re.match(r"\Ahttps://portal.issn.org/resource/ISSN/(.+)\Z", url)
+    if match is None:
+        return None
+    return match.group(1)
+
+
 def get_language(lang: str, format: str = "alpha_2") -> Optional[str]:
     """Provide a language string based on ISO 639, with either a name in English,
     ISO 639-1, or ISO 639-3 code as input. Optionally format as alpha_2 (defaul),

{commonmeta_py-0.37 → commonmeta_py-0.38}/commonmeta/writers/inveniordm_writer.py

@@ -2,12 +2,23 @@
 
 import orjson as json
 from typing import Optional
+from furl import furl
 
 from ..base_utils import compact, wrap, parse_attributes, presence
 from ..date_utils import get_iso8601_date
-from ..doi_utils import doi_from_url
-from ..constants import CM_TO_INVENIORDM_TRANSLATIONS, INVENIORDM_IDENTIFIER_TYPES
-from ..utils import get_language, validate_orcid, id_from_url, FOS_MAPPINGS
+from ..doi_utils import doi_from_url, normalize_doi
+from ..constants import (
+    CM_TO_INVENIORDM_TRANSLATIONS,
+    INVENIORDM_IDENTIFIER_TYPES,
+    CROSSREF_FUNDER_ID_TO_ROR_TRANSLATIONS,
+)
+from ..utils import (
+    get_language,
+    validate_orcid,
+    id_from_url,
+    issn_from_url,
+    FOS_MAPPINGS,
+)
 
 
 def write_inveniordm(metadata):
@@ -30,6 +41,26 @@ def write_inveniordm(metadata):
         for i in wrap(metadata.identifiers)
         if i.get("id", None) != metadata.id
     ]
+    print(metadata.references)
+    print(metadata.relations)
+    references = [
+        to_inveniordm_related_identifier(i)
+        for i in wrap(metadata.references)
+        if i.get("id", None)
+    ]
+    relations = [
+        to_inveniordm_related_identifier(i)
+        for i in wrap(metadata.relations)
+        if i.get("id", None) and i.get("type", None)
+    ]
+    related_identifiers = references + relations
+    funding = compact(
+        [
+            to_inveniordm_funding(i)
+            for i in wrap(metadata.funding_references)
+            if i.get("funderName", None)
+        ]
+    )
     container = metadata.container if metadata.container else {}
     journal = (
         container.get("title", None)
@@ -42,6 +73,14 @@ def write_inveniordm(metadata):
         if container.get("identifierType", None) == "ISSN"
         else None
     )
+    dates = []
+    if metadata.date.get("updated", None):
+        dates.append(
+            {
+                "date": metadata.date.get("updated"),
+                "type": {"id": "updated"},
+            }
+        )
 
     subjects = [to_inveniordm_subject(i) for i in wrap(metadata.subjects)]
     data = compact(
@@ -67,14 +106,7 @@ def write_inveniordm(metadata):
                     "publication_date": get_iso8601_date(metadata.date.get("published"))
                     if metadata.date.get("published", None)
                     else None,
-                    "dates": [
-                        {
-                            "date": metadata.date.get("updated"),
-                            "type": {"id": "updated"},
-                        }
-                    ]
-                    if metadata.date.get("updated", None)
-                    else None,
+                    "dates": presence(dates),
                     "subjects": presence(subjects),
                     "description": parse_attributes(
                         metadata.descriptions, content="description", first=True
@@ -88,6 +120,8 @@ def write_inveniordm(metadata):
                     if metadata.language
                     else None,
                     "identifiers": identifiers,
+                    "related_identifiers": presence(related_identifiers),
+                    "funding": presence(funding),
                     "version": metadata.version,
                 }
             ),
@@ -173,3 +207,85 @@ def to_inveniordm_affiliations(creator: dict) -> Optional[list]:
     return compact(
         [format_affiliation(i) for i in wrap(creator.get("affiliations", None))]
     )
+
+
+def to_inveniordm_related_identifier(relation: dict) -> dict:
+    """Convert reference or relation to inveniordm related_identifier"""
+    if normalize_doi(relation.get("id", None)):
+        identifier = doi_from_url(relation.get("id", None))
+        scheme = "doi"
+    elif (
+        relation.get("type", None) == "IsPartOf"
+        and furl(relation.get("id", None)).host == "portal.issn.org"
+    ):
+        identifier = issn_from_url(relation.get("id", None))
+        scheme = "issn"
+    else:
+        identifier = relation.get("id", None)
+        scheme = "url"
+
+    # normalize relation types
+    if relation.get("type", None) is None:
+        relation["type"] = "References"
+    if relation.get("type") == "HasReview":
+        relation["type"] = "IsReviewedBy"
+    relation_type = relation.get("type").lower()
+    return compact(
+        {
+            "identifier": identifier,
+            "scheme": scheme,
+            "relation_type": {
+                "id": relation_type,
+            },
+        }
+    )
+
+
+def to_inveniordm_funding(funding: dict) -> Optional[dict]:
+    """Convert funding to inveniordm funding"""
+    if funding.get("funderIdentifierType", None) == "ROR":
+        funder_identifier = id_from_url(funder_identifier)
+    elif funding.get("funderIdentifierType", None) == "Crossref Funder ID":
+        # convert to ROR
+        funder_identifier = id_from_url(
+            CROSSREF_FUNDER_ID_TO_ROR_TRANSLATIONS.get(
+                funding.get("funderIdentifier", None), None
+            )
+        )
+    else:
+        funder_identifier = None
+    award_title = funding.get("awardTitle", None)
+    if award_title:
+        award_title = {"title": {"en": award_title}}
+    if funding.get("awardUri", None):
+        award_identifiers = [
+            {
+                "scheme": "url",
+                "identifier": funding.get("awardUri", None),
+            },
+        ]
+    else:
+        award_identifiers = None
+    if funding.get("awardNumber", None) or award_title or award_identifiers:
+        award = (
+            compact(
+                {
+                    "number": funding.get("awardNumber", None),
+                    "title": award_title,
+                    "identifiers": award_identifiers,
+                }
+            ),
+        )
+    else:
+        award = None
+    return compact(
+        {
+            "funder": compact(
+                {
+                    "name": funding.get("funderName"),
+                    "id": funder_identifier,
+                }
+            ),
+            "award": award,
+        }
+    )

{commonmeta_py-0.37 → commonmeta_py-0.38}/pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name="commonmeta-py"
-version="0.37"
+version="0.38"
 repository = "https://github.com/front-matter/commonmeta-py"
 homepage = "https://python.commonmeta.org"
 documentation = "https://python.commonmeta.org"