commonmeta-py 0.20__tar.gz → 0.21__tar.gz

{commonmeta_py-0.20 → commonmeta_py-0.21}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: commonmeta-py
-Version: 0.20
+Version: 0.21
 Summary: Library for conversions to/from the Commonmeta scholarly metadata format
 Author-email: Martin Fenner <martin@front-matter.io>
 License-File: LICENSE

{commonmeta_py-0.20 → commonmeta_py-0.21}/commonmeta/author_utils.py

@@ -63,7 +63,7 @@ def get_one_author(author, **kwargs):
     ) or parse_attributes(
         author.get("contributorName", None), content="type", first=True
     )
-
+    print(author)
     # also handle Crossref, JSON Feed, or DataCite metadata
     _id = (
         author.get("id", None)
@@ -72,7 +72,7 @@ def get_one_author(author, **kwargs):
         or next(
             (
                 format_name_identifier(i)
-                for i in wrap(author.get("nameIdentifiers", None))
+                for i in wrap(author.get("nameIdentifiers", None or author.get("identifiers", None)))
             ),
             None,
         )

{commonmeta_py-0.20 → commonmeta_py-0.21}/commonmeta/constants.py

@@ -266,6 +266,17 @@ INVENIORDM_TO_CM_TRANSLATIONS = {
     "other": "Other",
 }
 
+CM_TO_INVENIORDM_TRANSLATIONS = {
+    "Article": "publication-preprint",
+    "Book": "book",
+    "Dataset": "dataset",
+    "Image": "image-other",
+    "JournalArticle": "publication-article",
+    "Presentation": "presentation",
+    "Software": "software",
+    "Other": "other",
+}
+
 CM_TO_DC_TRANSLATIONS = {
     "Article": "Preprint",
     "Audiovisual": "Audiovisual",

{commonmeta_py-0.20 → commonmeta_py-0.21}/commonmeta/doi_utils.py

@@ -34,6 +34,19 @@ def validate_prefix(doi: Optional[str]) -> Optional[str]:
     return match.group(6)
 
 
+def validate_suffix(doi: Optional[str]) -> Optional[str]:
+    """Validate a DOI suffix for a given DOI"""
+    if doi is None:
+        return None
+    match = re.search(
+        r"\A(?:(http|https):/(/)?(dx\.)?(doi\.org|handle\.stage\.datacite\.org|handle\.test\.datacite\.org)/)?(doi:)?(10\.\d{4,5})/(.+)\Z",  # noqa: E501
+        doi,
+    )
+    if match is None:
+        return None
+    return match.group(7)
+
+
 def doi_from_url(url: Optional[str]) -> Optional[str]:
     """Return a DOI from a URL"""
     if url is None:

{commonmeta_py-0.20 → commonmeta_py-0.21}/commonmeta/metadata.py

@@ -45,6 +45,7 @@ from .writers.csl_writer import write_csl, write_csl_list
 from .writers.ris_writer import write_ris, write_ris_list
 from .writers.schema_org_writer import write_schema_org
 from .writers.commonmeta_writer import write_commonmeta, write_commonmeta_list
+from .writers.inveniordm_writer import write_inveniordm
 from .utils import normalize_id, find_from_format
 from .base_utils import parse_xml, wrap
 from .doi_utils import doi_from_url
@@ -216,6 +217,8 @@ class Metadata:
                 return write_ris(self)
             elif to == "schema_org":
                 return write_schema_org(self)
+            elif to == "inveniordm":
+                return write_inveniordm(self)
             elif to == "datacite":
                 instance = json.loads(write_datacite(self))
                 self.write_errors = json_schema_errors(instance, schema="datacite")

{commonmeta_py-0.20 → commonmeta_py-0.21}/commonmeta/utils.py

@@ -264,16 +264,20 @@ def format_name_identifier(ni):
         return None
     elif isinstance(ni, str):
         return normalize_orcid(ni) or normalize_ror(ni) or normalize_isni(ni)
-    name_identifier = ni.get("nameIdentifier", None) or ni.get(
-        "publisherIdentifier", None
+    name_identifier = (
+        ni.get("nameIdentifier", None)
+        or ni.get("identifier", None)
+        or ni.get("publisherIdentifier", None)
     )
-    name_identifier_scheme = ni.get("nameIdentifierScheme", None) or ni.get(
-        "publisherIdentifierScheme", None
+    name_identifier_scheme = (
+        ni.get("nameIdentifierScheme", None)
+        or ni.get("scheme", None)
+        or ni.get("publisherIdentifierScheme", None)
     )
     scheme_uri = ni.get("schemeURI", None) or ni.get("schemeUri", None)
     if name_identifier is None:
         return None
-    elif name_identifier_scheme == "ORCID":
+    elif name_identifier_scheme in ["ORCID", "orcid"]:
         return normalize_orcid(name_identifier)
     elif name_identifier_scheme == "ISNI":
         return normalize_isni(name_identifier)
@@ -388,6 +392,22 @@ def from_inveniordm(elements: list) -> list:
     return [format_element(i) for i in elements]
 
 
+def to_inveniordm(elements: list) -> list:
+    """Convert elements to InvenioRDM"""
+
+    def format_element(i):
+        """format element"""
+        element = {}
+        element["familyName"] = i.get("familyName", None)
+        element["givenName"] = i.get("givenName", None)
+        element["name"] = i.get("name", None)
+        element["type"] = i.get("type", None)
+        element["ORCID"] = i.get("ORCID", None)
+        return compact(element)
+
+    return [format_element(i) for i in elements]
+
+
 def from_crossref_xml(elements: list) -> list:
     """Convert from crossref_xml elements"""
 
@@ -1043,9 +1063,9 @@ def issn_as_url(issn: str) -> Optional[str]:
     return f"https://portal.issn.org/resource/ISSN/{issn}"
 
 
-def get_language(lang: str, format: str="alpha_2") -> Optional[str]:
+def get_language(lang: str, format: str = "alpha_2") -> Optional[str]:
     """Provide a language string based on ISO 639, with either a name in English,
-    ISO 639-1, or ISO 639-3 code as input. Optionally format as alpha_2 (defaul), 
+    ISO 639-1, or ISO 639-3 code as input. Optionally format as alpha_2 (defaul),
     alpha_3, or name.
     """
     if not lang:
@@ -1056,7 +1076,7 @@ def get_language(lang: str, format: str="alpha_2") -> Optional[str]:
         language = pycountry.languages.get(alpha_3=lang)
     else:
         language = pycountry.languages.get(name=lang)
-        
+
     if language is None:
         return None
     elif format == "name":

commonmeta_py-0.21/commonmeta/writers/inveniordm_writer.py

@@ -0,0 +1,94 @@
+"""InvenioRDM writer for commonmeta-py"""
+
+import orjson as json
+
+from ..utils import to_inveniordm
+from ..base_utils import compact, wrap, presence, parse_attributes
+from ..doi_utils import doi_from_url, validate_suffix
+from ..constants import CM_TO_INVENIORDM_TRANSLATIONS
+from ..utils import pages_as_string, get_language, validate_orcid
+
+
+def write_inveniordm(metadata):
+    """Write inveniordm"""
+    if metadata is None or metadata.write_errors is not None:
+        return None
+    _type = CM_TO_INVENIORDM_TRANSLATIONS.get(metadata.type, "Other")
+    creators = [
+        to_inveniordm_creator(i)
+        for i in wrap(metadata.contributors)
+        if i.get("contributorRoles", None) == ["Author"]
+    ]
+    identifiers = [
+        {
+            "identifier": i.get("identifier", None),
+            "scheme": i.get("identifierType", None),
+        }
+        for i in wrap(metadata.identifiers)
+        if i.get("id", None) != metadata.id
+    ]
+    publisher = metadata.publisher or {}
+    data = compact(
+        {
+            "metadata": {
+                "resource_type": {"id": _type},
+                "doi": doi_from_url(metadata.id),
+                "creators": creators,
+                "title": parse_attributes(metadata.titles, content="title", first=True),
+                "publisher": publisher.get("name", None),
+                "publication_date": metadata.date.get("published")
+                if metadata.date.get("published", None)
+                else None,
+                "subjects": parse_attributes(
+                    wrap(metadata.subjects), content="subject", first=False
+                ),
+                "contributors": to_inveniordm(wrap(metadata.contributors)),
+                "description": parse_attributes(
+                    metadata.descriptions, content="description", first=True
+                ),
+                "license": metadata.license.get("id", None)
+                if metadata.license
+                else None,
+                "languages": [{"id": get_language(metadata.language, format="alpha_3")}]
+                if metadata.language
+                else None,
+                "identifiers": identifiers,
+                "version": metadata.version,
+            },
+        }
+    )
+    return json.dumps(data)
+
+
+def to_inveniordm_creator(creator: dict) -> dict:
+    """Convert creators to inveniordm creators"""
+
+    def format_identifier(id):
+        identifier = validate_orcid(id)
+        if identifier:
+            return [
+                {
+                    "identifier": identifier,
+                    "scheme": "orcid",
+                }
+            ]
+        return None
+
+    _type = creator.get("type", None)
+    if creator.get("familyName", None):
+        name = ", ".join([creator.get("familyName", ""), creator.get("givenName", "")])
+    elif creator.get("name", None):
+        name = creator.get("name", None)
+
+    return {
+        "person_or_org": compact(
+            {
+                "name": name,
+                "given_name": creator.get("givenName", None),
+                "family_name": creator.get("familyName", None),
+                "type": _type.lower() + "al" if _type else None,
+                "identifiers": format_identifier(creator.get("id", None)),
+                "affiliation": creator.get("affiliations", None),
+            }
+        )
+    }

{commonmeta_py-0.20 → commonmeta_py-0.21}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "commonmeta-py"
-version="0.20"
+version="0.21"
 repository = "https://github.com/front-matter/commonmeta-py"
 homepage = "https://python.commonmeta.org"
 documentation = "https://python.commonmeta.org"

commonmeta_py-0.21/tests/cassettes/test-inveniordm_writer/test_from_json_feed.yaml

@@ -0,0 +1,189 @@
+interactions:
+- request:
+    body: ''
+    headers:
+      accept:
+      - '*/*'
+      accept-encoding:
+      - gzip, deflate
+      connection:
+      - keep-alive
+      host:
+      - api.rogue-scholar.org
+      user-agent:
+      - python-httpx/0.27.2
+    method: GET
+    uri: https://api.rogue-scholar.org/posts/9e24e4be-1915-48cc-a6b0-c23da5bc2857
+  response:
+    body:
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+      fly-request-id:
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+      ratelimit-limit:
+      - '15'
+      ratelimit-remaining:
+      - '14'
+      ratelimit-reset:
+      - '3'
+      server:
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+      transfer-encoding:
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commonmeta_py-0.21/tests/cassettes/test-inveniordm_writer/test_journal_article.yaml

@@ -0,0 +1,181 @@
+interactions:
+- request:
+    body: ''
+    headers:
+      accept:
+      - '*/*'
+      accept-encoding:
+      - gzip, deflate
+      connection:
+      - keep-alive
+      host:
+      - doi.org
+      user-agent:
+      - python-httpx/0.27.2
+    method: GET
+    uri: https://doi.org/ra/10.7554
+  response:
+    body:
+      string: !!binary |
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+    headers:
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+      - DYNAMIC
+      CF-RAY:
+      - 8cad04074e2dc7f4-DUS
+      Connection:
+      - keep-alive
+      Content-Encoding:
+      - gzip
+      Content-Type:
+      - application/json;charset=UTF-8
+      Date:
+      - Sun, 29 Sep 2024 15:30:39 GMT
+      NEL:
+      - '{"success_fraction":0,"report_to":"cf-nel","max_age":604800}'
+      Report-To:
+      - '{"endpoints":[{"url":"https:\/\/a.nel.cloudflare.com\/report\/v4?s=nzeor7BACYs8k9tQrbMnaPByRWn%2Bq6%2BxSQzZ7%2FAG1oj3GIu8eCud2%2BBarAW7jgi0iy1Yk28IzmpVRi0puKz51KioQvGmEvi2rMZjNb%2FuXiptf7mA2EY6eoW9VkULA8qBISaiq40%3D"}],"group":"cf-nel","max_age":604800}'
+      Server:
+      - cloudflare
+      Strict-Transport-Security:
+      - max-age=31536000; includeSubDomains; preload
+      Transfer-Encoding:
+      - chunked
+      permissions-policy:
+      - interest-cohort=(),browsing-topics=()
+      vary:
+      - Origin
+    status:
+      code: 200
+      message: OK
+- request:
+    body: ''
+    headers:
+      accept:
+      - '*/*'
+      accept-encoding:
+      - gzip, deflate
+      connection:
+      - keep-alive
+      host:
+      - api.crossref.org
+      user-agent:
+      - python-httpx/0.27.2
+    method: GET
+    uri: https://api.crossref.org/works/10.7554/elife.01567
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