columx 2.3.0__tar.gz

columx-2.3.0/CHANGELOG.md

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+# Changelog
+
+All notable changes to ColumX are documented in this file.
+
+## [2.3.0] — 2026-06-26
+
+### Added
+- **CBED module** (`cbed`): Convergent beam electron diffraction with disk geometry, HOLZ rings, symmetry analysis, kinematical approximation
+- **EELS module** (`eels`): Zero-loss peak, plasmon peaks, core-loss edges, elemental fingerprinting, thickness estimation (log-ratio and plural scattering)
+- **HRTEM module** (`hrtem`): WPOA linear imaging, multislice nonlinear imaging, defocus series, power spectrum, Scherzer imaging
+- **DPC module** (`dpc`): Segmented detector, center-of-mass shift, quantitative electric/magnetic field and charge density reconstruction
+- **Web API**: FastAPI REST API with 6 endpoints covering Glaser, CTF, Probe, Multislice, Crystal, STEM
+- **Web Frontend**: Vue3 + Plotly.js single-page application with interactive charts
+- **Instrument presets**: Titan, Themis, ARM200F, ARM300F2
+
+### Changed
+- Project renamed from TEMGYM Super to ColumX
+- GUI upgraded from 16 to 20 panels with full MainWindow integration
+- 269 tests across 8 test files
+
+## [2.2.0] — 2026-06-25
+
+### Added
+- **Crystal module** (`crystal`): Kirkland parameterized scattering factors, 7 built-in crystal structures (Si, Ge, GaAs, SiC, MgO, Al, Au), projected potential calculation, 3D potential, mean inner potential, d-spacing table
+- **STEM module** (`stem`): 2D STEM probe, annular detectors (BF/ADF/HAADF), Z-contrast imaging, HAADF cross-section, Z-contrast ratio
+
+## [2.1.0] — 2026-06-23
+
+### Added
+- **5th-order aberrations**: C5 with hybrid Seidel/Glaser approach, S5, Krivanek standard naming interface
+- **Multislice engine** (`multislice`): FFT-based wave propagation, phase grating/amorphous/weak phase object specimen models, abTEM interface
+- **Cs/Cc adaptive power**: `cs_power='auto'` and `cc_power='auto'` with Glaser-formula optimization
+- **Instruments library**: Pre-configured microscope setups
+
+### Changed
+- Cs accuracy < 0.04%, Cc accuracy < 0.02% (200 kV objective lens vs MEBS)
+
+## [2.0.0] — 2026-06-22
+
+### Added
+- **MEBS compatibility mode**: `match_mebs=True` replicates MEBS mixed relativistic convention (non-relativistic V in paraxial, relativistic V* in Seidel integrals)
+- **Dual solver architecture**: M/theta solver with 0.006% accuracy
+- **Lens cascade** (`lens_cascade`): Multi-lens systems with Conrady aberration propagation
+- **Electrostatic paraxial** (`electrostatic_paraxial`): Full electrostatic paraxial ODE solver + aberrations
+
+## [1.0.0] — 2026-06-21
+
+### Added
+- Initial release with 13 core modules: `constants`, `paraxial`, `ray3d`, `glaser`, `aberration`, `fem2d`, `field`, `multipole`, `source`, `wave`, `deflection`, `coulomb`, `column`
+- Glaser analytical magnetic lens model
+- Paraxial ray equation solver with g/h ray basis
+- Seidel aberration integrals (Cs, Cc)
+- 3D relativistic Lorentz force ray tracing
+- 2D FEM field solver
+- PySide6 desktop GUI with 13 panels

columx-2.3.0/LICENSE

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+MIT License
+
+Copyright (c) 2026 ColumX Contributors
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

columx-2.3.0/MANIFEST.in

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+include LICENSE
+include README.md
+include CHANGELOG.md
+include requirements.txt
+recursive-include tests *.py
+recursive-include docs *.md
+recursive-include web *.html

columx-2.3.0/PKG-INFO

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+Metadata-Version: 2.4
+Name: columx
+Version: 2.3.0
+Summary: Advanced electron optics simulation platform for TEM/STEM/SEM column design
+Author: ColumX Contributors
+License-Expression: MIT
+Project-URL: Homepage, https://github.com/allen-li1231/ColumX
+Project-URL: Documentation, https://github.com/allen-li1231/ColumX#readme
+Project-URL: Issues, https://github.com/allen-li1231/ColumX/issues
+Keywords: electron-optics,transmission-electron-microscopy,TEM,STEM,aberration,multislice,glaser-lens,paraxial,simulation
+Classifier: Development Status :: 4 - Beta
+Classifier: Intended Audience :: Science/Research
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Topic :: Scientific/Engineering :: Physics
+Requires-Python: >=3.10
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: numpy>=1.24.0
+Requires-Dist: scipy>=1.10.0
+Provides-Extra: gui
+Requires-Dist: PySide6>=6.5; extra == "gui"
+Provides-Extra: api
+Requires-Dist: fastapi>=0.104.0; extra == "api"
+Requires-Dist: uvicorn[standard]>=0.24.0; extra == "api"
+Requires-Dist: pydantic>=2.0.0; extra == "api"
+Provides-Extra: dev
+Requires-Dist: pytest>=7.0; extra == "dev"
+Requires-Dist: pytest-cov; extra == "dev"
+Provides-Extra: all
+Requires-Dist: columx[api,dev,gui]; extra == "all"
+Dynamic: license-file
+
+# ColumX
+
+**Advanced Electron Optics Simulation Platform for TEM/STEM/SEM Column Design**
+
+ColumX is a comprehensive Python library for electron optics simulation, covering paraxial ray tracing, aberration calculation, wave optics, multislice propagation, crystal potentials, and full TEM/STEM column modeling. It is designed for researchers and engineers working on electron microscope column design, beam physics analysis, and image simulation.
+
+## Features
+
+ColumX provides 20 physics modules organized into four layers:
+
+**Ray Optics** — `paraxial`, `ray3d`, `glaser`, `aberration`, `electrostatic_paraxial`
+Magnetic and electrostatic lens modeling with Glaser analytical fields, adaptive-power Seidel aberration integrals (Cs < 0.04%, Cc < 0.02% vs MEBS), 5th-order aberration framework (C5, S5, Krivanek naming), and 3D relativistic Lorentz ray tracing.
+
+**Wave Optics** — `wave`, `multislice`, `crystal`
+Contrast transfer function with spatial/temporal coherence envelopes, STEM probe formation, FFT-based multislice propagation engine, and crystal structure module with Kirkland scattering factors for 7 built-in crystal presets (Si, Ge, GaAs, SiC, MgO, Al, Au).
+
+**Advanced Imaging** — `stem`, `cbed`, `eels`, `hrtem`, `dpc`
+STEM imaging chain (probe, annular detectors BF/ADF/HAADF, Z-contrast), convergent beam electron diffraction with HOLZ lines, EELS spectrum simulation with thickness measurement, HRTEM imaging (WPOA linear and multislice nonlinear), and differential phase contrast with electric/magnetic field reconstruction.
+
+**Column & Infrastructure** — `column`, `lens_cascade`, `multipole`, `source`, `deflection`, `coulomb`, `fem2d`, `field`, `instruments`, `constants`
+Full TEM column simulator, multi-lens cascade with Conrady aberration propagation, multipole elements, electron gun models (thermionic/field emission/Schottky), scanning deflection, space charge and Boersch effect, 2D FEM field solver, and instrument presets (Titan, Themis, ARM200F, ARM300F2).
+
+## Installation
+
+```bash
+# Core library
+pip install columx
+
+# With GUI (PySide6)
+pip install "columx[gui]"
+
+# With web API (FastAPI)
+pip install "columx[api]"
+
+# Everything
+pip install "columx[all]"
+```
+
+### From Source
+
+```bash
+git clone https://github.com/allen-li1231/ColumX.git
+cd ColumX
+pip install -e ".[all]"
+```
+
+## Quick Start
+
+### Glaser Lens
+
+```python
+from columx import GlaserLens
+
+lens = GlaserLens(V=200e3, B0=0.5, a=3e-3, z0=-30e-3, zf=60e-3)
+print(f"Focal length: {lens.analytical_efl()*1e3:.2f} mm")
+print(f"Magnification: {lens.analytical_magnification():.3f}")
+print(lens.summary())
+```
+
+### CTF and Probe
+
+```python
+from columx import ContrastTransferFunction, STEMProbe
+
+ctf = ContrastTransferFunction(V=200e3, Cs=1.2e-3, Cc=1.2e-3, defocus=-50e-9)
+print(f"Scherzer resolution: {ctf.scherzer_resolution()*1e10:.2f} A")
+
+probe = STEMProbe(V=200e3, Cs=1e-3, alpha=10e-3)
+print(f"Probe FWHM: {probe.probe_size()*1e10:.2f} A")
+```
+
+### Multislice Simulation
+
+```python
+from columx import MultisliceEngine
+from columx.multislice import phase_grating_potential
+import numpy as np
+
+V = np.stack([phase_grating_potential(
+    nx=128, ny=128, Lx=5e-9, Ly=5e-9,
+    period=1e-9, amplitude=10.0
+)] * 20)
+
+engine = MultisliceEngine(V=200e3, nx=128, ny=128, Lx=5e-9, Ly=5e-9, dz=0.5e-9)
+psi_exit = engine.run(V)
+dp = engine.diffraction_pattern(psi_exit)
+```
+
+### Crystal Potential
+
+```python
+from columx import CrystalStructure, projected_potential
+
+si = CrystalStructure.from_preset("Si")
+V_proj, info = projected_potential(si, nx=256)
+print(f"MIP: {info['MIP_V']:.1f} V")
+```
+
+## Web API
+
+Start the REST API server:
+
+```bash
+python run_web.py
+# → http://127.0.0.1:8000 (interactive frontend)
+# → http://127.0.0.1:8000/docs (OpenAPI documentation)
+```
+
+Endpoints: `POST /api/glaser/compute`, `POST /api/wave/ctf`, `POST /api/wave/probe`, `POST /api/multislice/simulate`, `POST /api/crystal/potential`, `POST /api/stem/probe`.
+
+## Desktop GUI
+
+Launch the PySide6 desktop application with 20 interactive panels:
+
+```bash
+python gui/columx_gui.py
+```
+
+## Testing
+
+```bash
+cd tests
+python test_all.py        # Core modules (13 modules)
+python test_new_physics.py # v2.0+ modules
+python test_crystal_stem.py # Crystal + STEM + CBED + EELS + HRTEM + DPC
+```
+
+269 tests covering all 20 modules.
+
+## Architecture
+
+```
+columx/
+├── columx/           # 20 physics modules (13,000+ lines)
+├── api/              # FastAPI REST API layer
+├── web/              # Vue3 + Plotly.js frontend
+├── gui/              # PySide6 desktop GUI (20 panels)
+├── tests/            # 269 tests across 8 test files
+└── docs/             # Architecture documentation
+```
+
+## Validation
+
+ColumX has been systematically validated against MEBS (Munro's Electron Beam Software):
+
+- **Paraxial**: M and theta accuracy 0.006%
+- **Aberrations**: Cs < 0.04%, Cc < 0.02% (200 kV, objective lens)
+- **5th order**: C5 verified against Krivanek analytical values
+- **MEBS compatibility**: `match_mebs=True` mode replicates MEBS mixed relativistic convention
+
+## References
+
+1. Glaser, W. *Grundlagen der Elektronenoptik* (Springer, 1952)
+2. Hawkes, P.W. & Kasper, E. *Principles of Electron Optics* (Academic Press, 1989)
+3. Reimer, L. *Transmission Electron Microscopy* 5th ed. (Springer, 2013)
+4. Krivanek, O.L. et al. *Ultramicroscopy* 110 (2010) 571-585
+5. Kirkland, E.J. *Advanced Computing in Electron Microscopy* 2nd ed. (Springer, 2010)
+
+## License
+
+MIT License. See [LICENSE](LICENSE).

columx-2.3.0/README.md

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+# ColumX
+
+**Advanced Electron Optics Simulation Platform for TEM/STEM/SEM Column Design**
+
+ColumX is a comprehensive Python library for electron optics simulation, covering paraxial ray tracing, aberration calculation, wave optics, multislice propagation, crystal potentials, and full TEM/STEM column modeling. It is designed for researchers and engineers working on electron microscope column design, beam physics analysis, and image simulation.
+
+## Features
+
+ColumX provides 20 physics modules organized into four layers:
+
+**Ray Optics** — `paraxial`, `ray3d`, `glaser`, `aberration`, `electrostatic_paraxial`
+Magnetic and electrostatic lens modeling with Glaser analytical fields, adaptive-power Seidel aberration integrals (Cs < 0.04%, Cc < 0.02% vs MEBS), 5th-order aberration framework (C5, S5, Krivanek naming), and 3D relativistic Lorentz ray tracing.
+
+**Wave Optics** — `wave`, `multislice`, `crystal`
+Contrast transfer function with spatial/temporal coherence envelopes, STEM probe formation, FFT-based multislice propagation engine, and crystal structure module with Kirkland scattering factors for 7 built-in crystal presets (Si, Ge, GaAs, SiC, MgO, Al, Au).
+
+**Advanced Imaging** — `stem`, `cbed`, `eels`, `hrtem`, `dpc`
+STEM imaging chain (probe, annular detectors BF/ADF/HAADF, Z-contrast), convergent beam electron diffraction with HOLZ lines, EELS spectrum simulation with thickness measurement, HRTEM imaging (WPOA linear and multislice nonlinear), and differential phase contrast with electric/magnetic field reconstruction.
+
+**Column & Infrastructure** — `column`, `lens_cascade`, `multipole`, `source`, `deflection`, `coulomb`, `fem2d`, `field`, `instruments`, `constants`
+Full TEM column simulator, multi-lens cascade with Conrady aberration propagation, multipole elements, electron gun models (thermionic/field emission/Schottky), scanning deflection, space charge and Boersch effect, 2D FEM field solver, and instrument presets (Titan, Themis, ARM200F, ARM300F2).
+
+## Installation
+
+```bash
+# Core library
+pip install columx
+
+# With GUI (PySide6)
+pip install "columx[gui]"
+
+# With web API (FastAPI)
+pip install "columx[api]"
+
+# Everything
+pip install "columx[all]"
+```
+
+### From Source
+
+```bash
+git clone https://github.com/allen-li1231/ColumX.git
+cd ColumX
+pip install -e ".[all]"
+```
+
+## Quick Start
+
+### Glaser Lens
+
+```python
+from columx import GlaserLens
+
+lens = GlaserLens(V=200e3, B0=0.5, a=3e-3, z0=-30e-3, zf=60e-3)
+print(f"Focal length: {lens.analytical_efl()*1e3:.2f} mm")
+print(f"Magnification: {lens.analytical_magnification():.3f}")
+print(lens.summary())
+```
+
+### CTF and Probe
+
+```python
+from columx import ContrastTransferFunction, STEMProbe
+
+ctf = ContrastTransferFunction(V=200e3, Cs=1.2e-3, Cc=1.2e-3, defocus=-50e-9)
+print(f"Scherzer resolution: {ctf.scherzer_resolution()*1e10:.2f} A")
+
+probe = STEMProbe(V=200e3, Cs=1e-3, alpha=10e-3)
+print(f"Probe FWHM: {probe.probe_size()*1e10:.2f} A")
+```
+
+### Multislice Simulation
+
+```python
+from columx import MultisliceEngine
+from columx.multislice import phase_grating_potential
+import numpy as np
+
+V = np.stack([phase_grating_potential(
+    nx=128, ny=128, Lx=5e-9, Ly=5e-9,
+    period=1e-9, amplitude=10.0
+)] * 20)
+
+engine = MultisliceEngine(V=200e3, nx=128, ny=128, Lx=5e-9, Ly=5e-9, dz=0.5e-9)
+psi_exit = engine.run(V)
+dp = engine.diffraction_pattern(psi_exit)
+```
+
+### Crystal Potential
+
+```python
+from columx import CrystalStructure, projected_potential
+
+si = CrystalStructure.from_preset("Si")
+V_proj, info = projected_potential(si, nx=256)
+print(f"MIP: {info['MIP_V']:.1f} V")
+```
+
+## Web API
+
+Start the REST API server:
+
+```bash
+python run_web.py
+# → http://127.0.0.1:8000 (interactive frontend)
+# → http://127.0.0.1:8000/docs (OpenAPI documentation)
+```
+
+Endpoints: `POST /api/glaser/compute`, `POST /api/wave/ctf`, `POST /api/wave/probe`, `POST /api/multislice/simulate`, `POST /api/crystal/potential`, `POST /api/stem/probe`.
+
+## Desktop GUI
+
+Launch the PySide6 desktop application with 20 interactive panels:
+
+```bash
+python gui/columx_gui.py
+```
+
+## Testing
+
+```bash
+cd tests
+python test_all.py        # Core modules (13 modules)
+python test_new_physics.py # v2.0+ modules
+python test_crystal_stem.py # Crystal + STEM + CBED + EELS + HRTEM + DPC
+```
+
+269 tests covering all 20 modules.
+
+## Architecture
+
+```
+columx/
+├── columx/           # 20 physics modules (13,000+ lines)
+├── api/              # FastAPI REST API layer
+├── web/              # Vue3 + Plotly.js frontend
+├── gui/              # PySide6 desktop GUI (20 panels)
+├── tests/            # 269 tests across 8 test files
+└── docs/             # Architecture documentation
+```
+
+## Validation
+
+ColumX has been systematically validated against MEBS (Munro's Electron Beam Software):
+
+- **Paraxial**: M and theta accuracy 0.006%
+- **Aberrations**: Cs < 0.04%, Cc < 0.02% (200 kV, objective lens)
+- **5th order**: C5 verified against Krivanek analytical values
+- **MEBS compatibility**: `match_mebs=True` mode replicates MEBS mixed relativistic convention
+
+## References
+
+1. Glaser, W. *Grundlagen der Elektronenoptik* (Springer, 1952)
+2. Hawkes, P.W. & Kasper, E. *Principles of Electron Optics* (Academic Press, 1989)
+3. Reimer, L. *Transmission Electron Microscopy* 5th ed. (Springer, 2013)
+4. Krivanek, O.L. et al. *Ultramicroscopy* 110 (2010) 571-585
+5. Kirkland, E.J. *Advanced Computing in Electron Microscopy* 2nd ed. (Springer, 2010)
+
+## License
+
+MIT License. See [LICENSE](LICENSE).

columx-2.3.0/columx/__init__.py

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+"""
+ColumX v2.3.0 — Advanced Electron Optics Simulation Platform
+====================================================================
+对标 MEBS (Munro's Electron Beam Software) 全模块功能
+
+v2.3 改进:
+  - CBED会聚束衍射 (cbed): 圆盘花样, HOLZ线, 对称性分析, 运动学近似
+  - EELS能谱 (eels): ZLP, 等离子体峰, 核心损失边, 元素指纹, 厚度测量
+  - HRTEM像模拟 (hrtem): WPOA线性成像, Multislice非线性, 欠焦系列, 功率谱
+  - DPC场映射 (dpc): 分段探测器, 质心偏移, 电场/磁场/电荷密度定量
+
+v2.2 改进:
+  - 晶体势场模块 (crystal): Kirkland散射因子, 7种内置晶体结构, 投影势计算
+  - STEM成像链路 (stem): 2D探针, 环形探测器(BF/ADF/HAADF), Z-contrast成像
+
+v2.1 改进:
+  - Cc自适应幂次 (cc_power='auto'): Glaser公式q=1.0-2.97×B/B0, Cc精度<0.02%
+  - 5阶像差框架: C5混合Seidel/Glaser, S5, Krivanek标准命名接口
+  - Multislice波传播: FFT传播引擎, 相位光栅/弱相位物体/非晶样品模型
+  - Cs/Cc精度: Cs<0.04%, Cc<0.02% (obj_v2 200kV vs MEBS)
+
+v2.0 改进:
+  - MEBS兼容模式 (match_mebs): 近轴方程使用V(非相对论), 像差积分使用V*(相对论)
+  - 双求解器架构: M/θ精度0.006%, Cs/Cc精度0.0%/2.4%
+  - Cs自适应幂次 (cs_power='auto'): Glaser公式p从4.0优化为4.0+0.383×B/B0
+  - 多透镜级联模块 (lens_cascade): Conrady像差传播
+  - 静电透镜求解器 (electrostatic_paraxial): 完整静电近轴ODE
+
+Modules:
+    constants            — Physical constants and relativistic utilities
+    ray3d                — 3D relativistic Lorentz force ray tracing
+    paraxial             — Paraxial ray equation solver (g/h rays, MEBS compat)
+    glaser               — Glaser bell-shaped magnetic lens model
+    aberration           — Hybrid Seidel/Glaser aberration (Cs, Cc, C5, adaptive p/q)
+    fem2d                — 2D FEM field solver (SOFEM equivalent)
+    field                — Field interpolation utilities
+    multipole            — Multipole elements (quad, hex, octupole)
+    source               — Electron gun emission models
+    wave                 — Wave optics: CTF, probe formation, diffraction
+    deflection           — Scanning deflection and dynamic correction
+    coulomb              — Coulomb interactions (trajectory displacement, Boersch)
+    column               — Full TEM column simulator
+    lens_cascade         — Multi-lens cascade with Conrady aberration propagation
+    electrostatic_paraxial — Electrostatic paraxial ODE solver + aberrations
+    multislice           — Multislice wave propagation engine
+    crystal              — Crystal structure, scattering factors, projected potential
+    stem                 — STEM imaging chain: probe, detectors, Z-contrast
+    cbed                 — Convergent beam electron diffraction
+    eels                 — Electron energy loss spectroscopy
+    hrtem                — High-resolution TEM image simulation
+    dpc                  — Differential phase contrast STEM imaging
+"""
+__version__ = "2.3.0"
+
+__all__ = [
+    'constants', 'ray3d', 'paraxial', 'glaser', 'aberration',
+    'fem2d', 'field', 'multipole', 'source', 'wave',
+    'deflection', 'coulomb', 'column', 'lens_cascade',
+    'electrostatic_paraxial', 'multislice', 'abtem_interface',
+    'instruments', 'crystal', 'stem',
+    'cbed', 'eels', 'hrtem', 'dpc',
+]
+
+# Convenience re-exports
+from .constants import (
+    q, m, c_light, h_planck, hbar, k_B, eps0, mu0,
+    relativistic_voltage, alpha_paraxial, electron_wavelength,
+    electron_velocity, gamma_factor,
+)
+
+from .paraxial import ParaxialSolver
+from .glaser import GlaserLens
+from .aberration import AberrationCalculator
+from .ray3d import trace_ray, trace_rays
+from .field import FieldInterpolator1D, FieldInterpolator2D, FieldMap
+from .multipole import QuadrupoleLens, MultipoleCascade, drift_matrix, thin_lens_matrix
+from .source import ThermionicEmitter, FieldEmitter, SchottkyEmitter, GunOptics
+from .wave import ContrastTransferFunction, STEMProbe
+from .deflection import Deflector, ScanGenerator, WienFilter
+from .coulomb import SpaceCharge, TrajectoryDisplacement
+from .column import TEMColumn, PredefinedColumns
+from .lens_cascade import LensCascade, ConradyPropagation
+from .electrostatic_paraxial import ElectrostaticParaxialSolver, ElectrostaticAberrationCalculator
+from .multislice import MultisliceEngine, interaction_parameter
+from .abtem_interface import krivanek_to_polar, aberration_to_abtem
+from .instruments import get_instrument, list_instruments, setup_simulation
+from .crystal import (
+    CrystalStructure, Atom, projected_potential, potential_3d_from_crystal,
+    mean_inner_potential, scattering_factor_kirkland, d_spacings,
+)
+from .stem import (
+    STEMProbe2D, AnnularDetector, STEMImage,
+    haadf_cross_section, z_contrast_ratio,
+)
+from .cbed import CBEDPattern, disk_geometry, analyze_symmetry, holz_rings, cbed_from_crystal
+from .eels import (
+    EELSSpectrum, EELSQuantification, plasmon_energy,
+    edge_onset, differential_cross_section, estimate_thickness,
+)
+from .hrtem import (
+    HRTEMImage, power_spectrum, image_contrast, projected_phase_image, scherzer_image,
+)
+from .dpc import (
+    DPCImage, SegmentedDetector, electric_field_from_dpc,
+    magnetic_field_from_dpc, charge_density_from_dpc, dpc_magnitude,
+)