cognee 0.3.0.dev0__tar.gz → 0.3.2__tar.gz

{cognee-0.3.0.dev0 → cognee-0.3.2}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: cognee
-Version: 0.3.0.dev0
+Version: 0.3.2
 Summary: Cognee - is a library for enriching LLM context with a semantic layer for better understanding and reasoning.
 Project-URL: Homepage, https://www.cognee.ai
 Project-URL: Repository, https://github.com/topoteretes/cognee
@@ -44,7 +44,7 @@ Requires-Dist: pydantic-settings<3,>=2.2.1
 Requires-Dist: pydantic<3.0.0,>=2.10.5
 Requires-Dist: pylance<1.0.0,>=0.22.0
 Requires-Dist: pympler<2.0.0,>=1.1
-Requires-Dist: pypdf<6.0.0,>=4.1.0
+Requires-Dist: pypdf<7.0.0,>=4.1.0
 Requires-Dist: python-dotenv<2.0.0,>=1.0.1
 Requires-Dist: python-magic-bin<0.5; platform_system == 'Windows'
 Requires-Dist: python-multipart<1.0.0,>=0.0.20

{cognee-0.3.0.dev0 → cognee-0.3.2}/cognee/__init__.py

@@ -27,6 +27,7 @@ from .api.v1.visualize import visualize_graph, start_visualization_server
 from cognee.modules.visualization.cognee_network_visualization import (
     cognee_network_visualization,
 )
+from .api.v1.ui import start_ui
 
 # Pipelines
 from .modules import pipelines

cognee-0.3.2/cognee/api/v1/save/save.py

@@ -0,0 +1,335 @@
+import os
+import asyncio
+import json
+from typing import Optional, Union, List, Dict
+from uuid import UUID
+
+from pydantic import BaseModel
+
+from cognee.base_config import get_base_config
+from cognee.modules.users.models import User
+from cognee.modules.users.methods import get_default_user
+from cognee.modules.data.methods import get_authorized_existing_datasets, get_dataset_data
+from cognee.infrastructure.files.utils.get_data_file_path import get_data_file_path
+from cognee.infrastructure.llm.LLMGateway import LLMGateway
+from cognee.shared.logging_utils import get_logger
+from cognee.api.v1.search import search
+from cognee.modules.search.types import SearchType
+
+
+logger = get_logger("save")
+
+
+class QuestionsModel(BaseModel):
+    questions: List[str]
+
+
+def _sanitize_filename(name: str) -> str:
+    safe = "".join(c if c.isalnum() or c in ("-", "_", ".", " ") else "_" for c in name)
+    return safe.strip().replace(" ", "_")
+
+
+def _dataset_dir_name(dataset) -> str:
+    # Prefer readable dataset name when available, fallback to id
+    if getattr(dataset, "name", None):
+        return _sanitize_filename(str(dataset.name))
+    return str(dataset.id)
+
+
+def _file_markdown_name(data_item, used_names: set[str]) -> str:
+    # Use original file name if present, else data.name
+    name = getattr(data_item, "name", None) or "file"
+    base = _sanitize_filename(str(name))
+    filename = f"{base}.md"
+    if filename in used_names:
+        short_id = str(getattr(data_item, "id", ""))[:8]
+        filename = f"{base}__{short_id}.md"
+    used_names.add(filename)
+    return filename
+
+
+def _ascii_path_tree(path_str: str) -> str:
+    if not path_str:
+        return "(no path)"
+
+    # Normalize special schemes but keep segments readable
+    try:
+        normalized = get_data_file_path(path_str)
+    except Exception:
+        normalized = path_str
+
+    # Keep the path compact – show last 5 segments
+    parts = [p for p in normalized.replace("\\", "/").split("/") if p]
+    if len(parts) > 6:
+        display = ["…"] + parts[-5:]
+    else:
+        display = parts
+
+    # Render a single-branch tree
+    lines = []
+    for idx, seg in enumerate(display):
+        prefix = "└── " if idx == 0 else ("    " * idx + "└── ")
+        lines.append(f"{prefix}{seg}")
+    return "\n".join(lines)
+
+
+async def _get_summary_via_summaries(query_text: str, dataset_id: UUID, top_k: int) -> str:
+    try:
+        results = await search(
+            query_text=query_text,
+            query_type=SearchType.SUMMARIES,
+            dataset_ids=[dataset_id],
+            top_k=top_k,
+        )
+        if not results:
+            return ""
+        texts: List[str] = []
+        for r in results[:top_k]:
+            texts.append(str(r))
+        return "\n\n".join(texts)
+    except Exception as e:
+        logger.error(
+            "SUMMARIES search failed for '%s' in dataset %s: %s",
+            query_text,
+            str(dataset_id),
+            str(e),
+        )
+        return ""
+
+
+async def _generate_questions(file_name: str, summary_text: str) -> List[str]:
+    prompt = (
+        "You are an expert analyst. Given a file and its summary, propose 10 diverse, high-signal "
+        "questions to further explore the file's content, implications, relationships, and gaps. "
+        "Avoid duplicates; vary depth and angle (overview, details, cross-references, temporal, quality).\n\n"
+        f"File: {file_name}\n\nSummary:\n{summary_text[:4000]}"
+    )
+
+    model = await LLMGateway.acreate_structured_output(
+        text_input=prompt,
+        system_prompt="Return strictly a JSON with key 'questions' and value as an array of 10 concise strings.",
+        response_model=QuestionsModel,
+    )
+
+    # model can be either pydantic model or dict-like, normalize
+    try:
+        questions = list(getattr(model, "questions", []))
+    except Exception:
+        questions = []
+
+    # Fallback if the tool returned a dict-like
+    if not questions and isinstance(model, dict):
+        questions = list(model.get("questions", []) or [])
+
+    # Enforce 10 max
+    return questions[:10]
+
+
+async def _run_searches_for_question(
+    question: str, dataset_id: UUID, search_types: List[SearchType], top_k: int
+) -> Dict[str, Union[str, List[dict], List[str]]]:
+    async def run_one(st: SearchType):
+        try:
+            result = await search(
+                query_text=question,
+                query_type=st,
+                dataset_ids=[dataset_id],
+                top_k=top_k,
+            )
+            return st.value, result
+        except Exception as e:
+            logger.error("Search failed for type %s: %s", st.value, str(e))
+            return st.value, [f"Error: {str(e)}"]
+
+    pairs = await asyncio.gather(*[run_one(st) for st in search_types])
+    return {k: v for k, v in pairs}
+
+
+def _format_results_md(results: Dict[str, Union[str, List[dict], List[str]]]) -> str:
+    lines: List[str] = []
+    for st, payload in results.items():
+        lines.append(f"#### {st}")
+        if isinstance(payload, list):
+            # Printed as bullet items; stringify dicts
+            for item in payload[:5]:
+                if isinstance(item, dict):
+                    # compact representation
+                    snippet = json.dumps(item, ensure_ascii=False)[:800]
+                    lines.append(f"- {snippet}")
+                else:
+                    text = str(item)
+                    lines.append(f"- {text[:800]}")
+        else:
+            lines.append(str(payload))
+        lines.append("")
+    return "\n".join(lines)
+
+
+async def save(
+    datasets: Optional[Union[List[str], List[UUID]]] = None,
+    export_root_directory: Optional[str] = None,
+    user: Optional[User] = None,
+    # Configurable knobs
+    max_questions: int = 10,
+    search_types: Optional[List[Union[str, SearchType]]] = None,
+    top_k: int = 5,
+    include_summary: bool = True,
+    include_ascii_tree: bool = True,
+    concurrency: int = 4,
+    timeout: Optional[float] = None,
+) -> Dict[str, str]:
+    """
+    Export per-dataset markdown summaries and search insights for each ingested file.
+
+    For every dataset the user can read:
+    - Create a folder under export_root_directory (or data_root_directory/exports)
+    - For each data item (file), create a .md containing:
+      - Summary of the file (from existing TextSummary nodes)
+      - A small ASCII path tree showing its folder position
+      - Up to N LLM-generated question ideas (configurable)
+      - Results of configured Cognee searches per question
+    Also creates an index.md per dataset with links to files and an optional dataset summary.
+
+    Returns a mapping of dataset_id -> export_directory path.
+    """
+    base_config = get_base_config()
+    export_root = export_root_directory or os.path.join(
+        base_config.data_root_directory, "memory_export"
+    )
+    os.makedirs(export_root, exist_ok=True)
+
+    if user is None:
+        user = await get_default_user()
+
+    datasets_list = await get_authorized_existing_datasets(datasets, "read", user)
+    results: Dict[str, str] = {}
+
+    for dataset in datasets_list:
+        ds_dir = os.path.join(export_root, _dataset_dir_name(dataset))
+        os.makedirs(ds_dir, exist_ok=True)
+        results[str(dataset.id)] = ds_dir
+
+        data_items = await get_dataset_data(dataset.id)
+
+        # Normalize search types
+        if not search_types:
+            effective_search_types = [
+                SearchType.GRAPH_COMPLETION,
+                SearchType.INSIGHTS,
+                SearchType.CHUNKS,
+            ]
+        else:
+            effective_search_types = []
+            for st in search_types:
+                if isinstance(st, SearchType):
+                    effective_search_types.append(st)
+                else:
+                    try:
+                        effective_search_types.append(SearchType[str(st)])
+                    except Exception:
+                        logger.warning("Unknown search type '%s', skipping", str(st))
+
+        sem = asyncio.Semaphore(max(1, int(concurrency)))
+        used_names: set[str] = set()
+        index_entries: List[tuple[str, str]] = []
+
+        async def process_one(data_item):
+            async with sem:
+                file_label = getattr(data_item, "name", str(data_item.id))
+                original_path = getattr(data_item, "original_data_location", None)
+
+                ascii_tree = (
+                    _ascii_path_tree(original_path or file_label) if include_ascii_tree else ""
+                )
+
+                summary_text = ""
+                if include_summary:
+                    # Use SUMMARIES search scoped to dataset to derive file summary
+                    file_query = getattr(data_item, "name", str(data_item.id)) or "file"
+                    summary_text = await _get_summary_via_summaries(file_query, dataset.id, top_k)
+                    if not summary_text:
+                        summary_text = "Summary not available."
+
+                if max_questions == 0:
+                    questions = []
+                else:
+                    questions = await _generate_questions(file_label, summary_text)
+                    if max_questions is not None and max_questions >= 0:
+                        questions = questions[:max_questions]
+
+                async def searches_for_question(q: str):
+                    return await _run_searches_for_question(
+                        q, dataset.id, effective_search_types, top_k
+                    )
+
+                # Run per-question searches concurrently
+                per_q_results = await asyncio.gather(*[searches_for_question(q) for q in questions])
+
+                # Build markdown content
+                md_lines = [f"# {file_label}", ""]
+                if include_ascii_tree:
+                    md_lines.extend(["## Location", "", "```", ascii_tree, "```", ""])
+                if include_summary:
+                    md_lines.extend(["## Summary", "", summary_text, ""])
+
+                md_lines.append("## Question ideas")
+                for idx, q in enumerate(questions, start=1):
+                    md_lines.append(f"- {idx}. {q}")
+                md_lines.append("")
+
+                md_lines.append("## Searches")
+                md_lines.append("")
+                for q, per_type in zip(questions, per_q_results):
+                    md_lines.append(f"### Q: {q}")
+                    md_lines.append(_format_results_md(per_type))
+                    md_lines.append("")
+
+                # Write to file (collision-safe)
+                md_filename = _file_markdown_name(data_item, used_names)
+                export_path = os.path.join(ds_dir, md_filename)
+                tmp_path = export_path + ".tmp"
+                with open(tmp_path, "w", encoding="utf-8") as f:
+                    f.write("\n".join(md_lines))
+                os.replace(tmp_path, export_path)
+
+                index_entries.append((file_label, md_filename))
+
+        tasks = [asyncio.create_task(process_one(item)) for item in data_items]
+
+        if timeout and timeout > 0:
+            try:
+                await asyncio.wait_for(asyncio.gather(*tasks, return_exceptions=True), timeout)
+            except asyncio.TimeoutError:
+                logger.error("Save timed out for dataset %s", str(dataset.id))
+        else:
+            await asyncio.gather(*tasks, return_exceptions=True)
+
+        # Build dataset index.md with TOC and optional dataset summary via SUMMARIES
+        try:
+            index_lines = [f"# Dataset: {_dataset_dir_name(dataset)}", "", "## Files", ""]
+            for display, fname in sorted(index_entries, key=lambda x: x[0].lower()):
+                index_lines.append(f"- [{display}]({fname})")
+
+            # Dataset summary section
+            try:
+                summaries = await search(
+                    query_text="dataset overview",
+                    query_type=SearchType.SUMMARIES,
+                    dataset_ids=[dataset.id],
+                    top_k=top_k,
+                )
+            except Exception as e:
+                logger.error("Dataset summary search failed: %s", str(e))
+                summaries = []
+
+            if summaries:
+                index_lines.extend(["", "## Dataset summary (top summaries)", ""])
+                for s in summaries[:top_k]:
+                    index_lines.append(f"- {str(s)[:800]}")
+
+            with open(os.path.join(ds_dir, "index.md"), "w", encoding="utf-8") as f:
+                f.write("\n".join(index_lines))
+        except Exception as e:
+            logger.error("Failed to write dataset index for %s: %s", str(dataset.id), str(e))
+
+    return results

{cognee-0.3.0.dev0 → cognee-0.3.2}/cognee/api/v1/search/routers/get_search_router.py

@@ -1,12 +1,12 @@
 from uuid import UUID
-from typing import Optional
+from typing import Optional, Union, List, Any
 from datetime import datetime
 from pydantic import Field
 from fastapi import Depends, APIRouter
 from fastapi.responses import JSONResponse
 from fastapi.encoders import jsonable_encoder
 
-from cognee.modules.search.types import SearchType
+from cognee.modules.search.types import SearchType, SearchResult, CombinedSearchResult
 from cognee.api.DTO import InDTO, OutDTO
 from cognee.modules.users.exceptions.exceptions import PermissionDeniedError
 from cognee.modules.users.models import User
@@ -73,7 +73,7 @@ def get_search_router() -> APIRouter:
         except Exception as error:
             return JSONResponse(status_code=500, content={"error": str(error)})
 
-    @router.post("", response_model=list)
+    @router.post("", response_model=Union[List[SearchResult], CombinedSearchResult, List])
     async def search(payload: SearchPayloadDTO, user: User = Depends(get_authenticated_user)):
         """
         Search for nodes in the graph database.

cognee-0.3.2/cognee/api/v1/ui/__init__.py

@@ -0,0 +1 @@
+from .ui import start_ui, stop_ui, ui