coffea-casa 2025.12.8__tar.gz → 2026.1.22__tar.gz

{coffea_casa-2025.12.8 → coffea_casa-2026.1.22}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: coffea-casa
-Version: 2025.12.8
+Version: 2026.1.22
 Summary: Wrappers for Dask clusters to be used from coffea-casa AF
 Project-URL: Homepage, https://github.com/CoffeaTeam/coffea-casa
 Project-URL: Documentation, https://coffea-casa.readthedocs.io/en/latest/

{coffea_casa-2025.12.8 → coffea_casa-2026.1.22}/coffea_casa/_version.py

@@ -28,7 +28,7 @@ version_tuple: VERSION_TUPLE
 commit_id: COMMIT_ID
 __commit_id__: COMMIT_ID
 
-__version__ = version = '2025.12.8'
-__version_tuple__ = version_tuple = (2025, 12, 8)
+__version__ = version = '2026.1.22'
+__version_tuple__ = version_tuple = (2026, 1, 22)
 
 __commit_id__ = commit_id = None

{coffea_casa-2025.12.8 → coffea_casa-2026.1.22}/docker/Dockerfile.cc-analysis-alma9

@@ -1,5 +1,5 @@
 #FROM coffeateam/coffea-base-almalinux8:0.7.22-py3.10
-FROM coffeateam/coffea-dask-almalinux9-noml:2025.10.2-py3.12
+FROM coffeateam/coffea-dask-almalinux9-noml:2025.11.0-py3.12
 
 
 USER root
@@ -105,18 +105,6 @@ RUN echo "auth requisite pam_deny.so" >> /etc/pam.d/su && \
     fix-permissions "${HOME}" && \
     fix-permissions "${CONDA_DIR}"
 
-# ------- mimalloc build -------------------------------
-# Clone mimalloc
-RUN cd /opt && \
-    git clone https://github.com/microsoft/mimalloc.git /opt/mimalloc && \
-    cd mimalloc && mkdir build && cd build && \
-    cmake .. \
-    #  -DMI_SECURE=ON \
-      -DMI_BUILD_SHARED=ON \
-      -DMI_BUILD_STATIC=ON && \
-    make && \
-    make install
-
 USER $NB_USER
 WORKDIR $HOME
 # Setup work directory for backward-compatibility
@@ -157,6 +145,7 @@ RUN pip install --no-cache-dir \
     mlflow \ 
     s3fs
 
+# FIXME
 #RUN if [ "${TAG:-}" == "development" ]; then pip install --no-cache-dir git+https://github.com/CoffeaTeam/coffea-casa.git#egg=coffea_casa ; else pip install --no-cache-dir coffea_casa -U ; fi
 RUN pip install --no-cache-dir git+https://github.com/CoffeaTeam/coffea-casa.git#egg=coffea_casa
 
@@ -177,9 +166,6 @@ ENV XRD_PLUGIN="${CONDA_DIR}/lib/libXrdClXcachePlugin-5.so"
 ENV LD_LIBRARY_PATH="${CONDA_DIR}/lib/:$LD_LIBRARY_PATH"
 ENV PATH="${CONDA_DIR}/bin/:$PATH"
 
-# Mimalloc
-ENV LD_PRELOAD=/usr/local/lib64/libmimalloc.so
-
 USER root
 # Setup supervisord files
 COPY k8s-worker/supervisord.conf  /etc/supervisor/

{coffea_casa-2025.12.8 → coffea_casa-2026.1.22}/docker/Dockerfile.cc-analysis-combine-alma9

@@ -1,5 +1,5 @@
 #FROM coffeateam/coffea-base-almalinux8:0.7.22-py3.10
-FROM coffeateam/coffea-dask-almalinux9-noml:2025.10.2-py3.12
+FROM coffeateam/coffea-dask-almalinux9-noml:2025.11.0-py3.12
 
 
 USER root

{coffea_casa-2025.12.8 → coffea_casa-2026.1.22}/docker/Dockerfile.cc-dask-alma9

@@ -1,4 +1,4 @@
-FROM coffeateam/coffea-dask-almalinux9-noml:2025.10.2-py3.12
+FROM coffeateam/coffea-dask-almalinux9-noml:2025.11.0-py3.12
 
 # https://github.com/jupyter/docker-stacks/blob/master/base-notebook/Dockerfile
 
@@ -157,6 +157,9 @@ RUN mamba install --quiet --yes \
     jupyterlab-git==0.41.0 \
     jupyter_client==8.1.0 \
     jupyterlab_widgets \
+    jupyter-server-proxy \
+    jupyter-vscode-proxy \
+    code-server \
     nodejs \
     ipywidgets==8.0.6 && \
     mamba clean \
@@ -166,6 +169,7 @@ RUN mamba install --quiet --yes \
     npm cache clean --force && \
     jupyter notebook --generate-config && \
     jupyter lab clean && \
+    code-server --install-extension ms-python.python && \
     rm -rf "/home/${NB_USER}/.cache/yarn"
     #fix-permissions "${CONDA_DIR}" && \
     #fix-permissions "/home/${NB_USER}"
@@ -203,15 +207,17 @@ RUN mkdir -p ${DASK_ROOT_CONFIG}  && chown -R "${NB_USER}:${NB_GID}" ${DASK_ROOT
 
 # ------- mimalloc build -------------------------------
 # Clone mimalloc
-RUN cd /opt && \
-    git clone https://github.com/microsoft/mimalloc.git /opt/mimalloc && \
-    cd mimalloc && mkdir build && cd build && \
-    cmake .. \
-    #  -DMI_SECURE=ON \
-      -DMI_BUILD_SHARED=ON \
-      -DMI_BUILD_STATIC=ON && \
-    make && \
-    make install
+#RUN cd /opt && \
+#    git clone https://github.com/microsoft/mimalloc.git /opt/mimalloc && \
+#    cd mimalloc && mkdir build && cd build && \
+#    cmake .. \
+#    #  -DMI_SECURE=ON \
+#      -DMI_BUILD_SHARED=ON \
+#      -DMI_BUILD_STATIC=ON && \
+#    make && \
+#    make install
+# ------- tcmalloc build -------------------------------
+
 
 USER ${NB_UID}
 
@@ -224,6 +230,7 @@ RUN mamba install --yes \
     ndcctools \
     numpy>2 \
     atlas-schema \
+    gperftools \
     && mamba clean \
         --all \
         --force-pkgs-dirs \
@@ -299,9 +306,6 @@ RUN cd /tmp && \
 ENV XRD_PLUGINCONFDIR="${CONDA_DIR}/etc/xrootd/client.plugins.d/"
 ENV XRD_PLUGIN="${CONDA_DIR}/lib/libXrdClXcachePlugin-5.so"
 
-# Mimalloc
-ENV LD_PRELOAD=/usr/local/lib64/libmimalloc.so
-
 # Coffea_casa - > jobqueue-coffea-casa.yaml
 COPY dask/jobqueue-coffea-casa.yaml dask/dask_tls.yaml ${DASK_ROOT_CONFIG}/
 

{coffea_casa-2025.12.8 → coffea_casa-2026.1.22}/docker/Dockerfile.cc-dask-combine-alma9

@@ -1,4 +1,4 @@
-FROM coffeateam/coffea-dask-almalinux9-noml:2025.10.2-py3.12
+FROM coffeateam/coffea-dask-almalinux9-noml:2025.11.0-py3.12
 
 # https://github.com/jupyter/docker-stacks/blob/master/base-notebook/Dockerfile
 
@@ -155,6 +155,9 @@ RUN mamba install --quiet --yes \
     jupyterlab-git==0.41.0 \
     jupyter_client==8.1.0 \
     jupyterlab_widgets \
+    jupyter-server-proxy \
+    jupyter-vscode-proxy \
+    code-server \
     nodejs \
     ipywidgets==8.0.6 && \
     mamba clean \
@@ -164,6 +167,7 @@ RUN mamba install --quiet --yes \
     npm cache clean --force && \
     jupyter notebook --generate-config && \
     jupyter lab clean && \
+    code-server --install-extension ms-python.python && \
     rm -rf "/home/${NB_USER}/.cache/yarn"
     #fix-permissions "${CONDA_DIR}" && \
     #fix-permissions "/home/${NB_USER}"

{coffea_casa-2025.12.8 → coffea_casa-2026.1.22}/docker/dask/jobqueue-coffea-casa.yaml

@@ -3,7 +3,7 @@ jobqueue:
     name: dask-worker
     # Dask worker options, taken from https://github.com/dask/dask-jobqueue/tree/master/dask_jobqueue
     cores: 1                 # Total number of cores per job
-    memory: "3GiB"                # Total amount of memory per job
+    memory: "4GiB"                # Total amount of memory per job
     processes: 1                # Number of Python processes per jobs
     worker-image: "hub.opensciencegrid.org/coffea-casa/cc-analysis-ubuntu:development"
 

coffea_casa-2026.1.22/docs/cc_tools.rst

@@ -0,0 +1,57 @@
+VS Code (code-server) on Coffea-casa
+===================================
+
+Overview
+--------
+Coffea-casa provides an integrated VS Code experience via code-server. From the JupyterHub launcher you can start a ready-to-use, browser-accessible VS Code instance in a separate window/tab. The VS Code home directory is the same as your JupyterHub home, so files and environments are shared between both interfaces.
+
+Quick start
+-----------
+1. Log in to the Coffea-casa JupyterHub.
+2. Open the launcher and choose the "VS Code" (or "code-server") option.
+3. A new browser window or tab will open with the code-server (VS Code) interface.
+4. Use the File > Open... or the Explorer to open folders and files from your home directory.
+
+.. image:: _static/launcher.png
+   :alt: Launcher with "VS Code"
+   :width: 100%
+   :align: center
+
+.. image:: _static/vscode.png
+   :alt: code-server (VS Code) interface in separate window
+   :width: 100%
+   :align: center
+
+Working with your files and environment
+--------------------------------------
+- Shared home directory: Files you create or edit in code-server are immediately available in the JupyterHub interface (and vice versa) because both use the same home directory.
+- Terminals: Use the integrated terminal in VS Code to run commands in the same environment as your JupyterHub session.
+- Notebooks: If your workspace contains Jupyter notebooks you can open them in VS Code. Behavior may depend on available extensions; for heavy notebook work you can continue using the JupyterHub notebook interface as needed.
+
+Saving and persistence
+----------------------
+- Save files frequently (Ctrl/Cmd+S). Changes written to your home directory persist across sessions according to your Coffea-casa account storage policy.
+- Extensions and settings may be preconfigured; 
+
+Tips and recommendations
+------------------------
+- To run a script interactively, open a terminal in VS Code and execute it there (the terminal starts in your home directory by default).
+- If you prefer the classic notebook UI for interactive data exploration, you can switch back to JupyterHub without losing files.
+- You may not have any more Dask labextension functionality in VS Code; use the JupyterHub interface for Dask dashboard access or use directly in code:
+
+.. code-block:: python
+
+    from dask.distributed import Client
+    client = Client("tls://localhost:8786")
+
+Troubleshooting
+---------------
+.. note::
+    If the VS Code window does not open automatically, check for blocked pop-ups in your browser or try opening the provided code-server link from the JupyterHub launcher.
+
+.. warning::
+    If you lose connection to code-server, your files are still on disk; reconnect via the launcher and reopen the workspace.
+
+Further help
+------------
+If you need additional capabilities (specific extensions, access to specialized compute, or configuration changes), contact your Coffea-casa administrators or support channel.

{coffea_casa-2025.12.8 → coffea_casa-2026.1.22}/docs/conf.py

@@ -15,7 +15,6 @@
 # sys.path.insert(0, os.path.abspath('.'))
 
 import coffea_casa
-import sphinx_rtd_theme
 
 # -- Project information -----------------------------------------------------
 
@@ -38,9 +37,6 @@ extensions = [
     "sphinx.ext.intersphinx",
     "sphinx.ext.ifconfig",
     "sphinx.ext.viewcode",
-    "nbsphinx",
-    "IPython.sphinxext.ipython_console_highlighting",
-    "sphinx_rtd_theme",
 ]
 
 # Add any paths that contain templates here, relative to this directory.
@@ -51,19 +47,9 @@ templates_path = ['_templates']
 # This pattern also affects html_static_path and html_extra_path.
 exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']
 
-
 # -- Options for HTML output -------------------------------------------------
 
 # The theme to use for HTML and HTML Help pages.  See the documentation for
 # a list of builtin themes.
 #
-html_theme = "sphinx_rtd_theme"
-html_theme_path = [sphinx_rtd_theme.get_html_theme_path()]
-
-# Add any paths that contain custom static files (such as style sheets) here,
-# relative to this directory. They are copied after the builtin static files,
-# so a file named "default.css" will overwrite the builtin "default.css".
-html_static_path = ['_static']
-
-#https://github.com/readthedocs/readthedocs.org/issues/2569
-master_doc = 'index'
+#html_theme = 'nextstrain-sphinx-theme'

{coffea_casa-2025.12.8 → coffea_casa-2026.1.22}/docs/index.rst

@@ -49,6 +49,7 @@ The facility is built on top of a Kubernetes cluster and integrates with dedicat
    cc_user.rst
    cc_user_ssl.rst
    cc_packages.rst
+   cc_tools.rst
    cc_metrics.rst
    cc_condor.rst
    cc_issues.rst