coffea-casa 2021.5.6.post1__tar.gz → 2025.11.25.2__tar.gz

coffea_casa-2025.11.25.2/.gitattributes

@@ -0,0 +1 @@
+coffea_casa/_version.py export-subst

coffea_casa-2025.11.25.2/.github/dependabot.yml

@@ -0,0 +1,11 @@
+# To get started with Dependabot version updates, you'll need to specify which
+# package ecosystems to update and where the package manifests are located.
+# Please see the documentation for all configuration options:
+# https://help.github.com/github/administering-a-repository/configuration-options-for-dependency-updates
+
+version: 2
+updates:
+  - package-ecosystem: "docker"
+    directory: "/docker/"
+    schedule:
+      interval: "daily"

coffea_casa-2025.11.25.2/.github/workflows/autotag.yaml

@@ -0,0 +1,57 @@
+name: Auto CalVer Tag on Master Push
+
+on:
+  push:
+    branches:
+      - master
+
+jobs:
+  calver-tag:
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: Set CalVer date
+        id: calver
+        run: |
+          # Get current date in YYYY.MM.DD format
+          date_tag=$(date +'%Y.%m.%d')
+          echo "base_tag=$date_tag" >> $GITHUB_OUTPUT
+
+      - name: Fetch all tags
+        run: |
+          git fetch --tags
+
+      - name: Determine next CalVer tag
+        id: next_tag
+        run: |
+          base=${{ steps.calver.outputs.base_tag }}
+          # List all existing tags that match today's date
+          existing=$(git tag --list "${base}*")
+
+          if ! echo "$existing" | grep -q "^$base$"; then
+            # No base tag exists yet, use the base tag (no suffix)
+            new_tag="$base"
+          else
+            # Base tag exists, find the highest numbered suffix
+            max=1  # because base tag is already used
+            for tag in $existing; do
+              suffix=$(echo $tag | sed -n "s/^$base\.//p")
+              if [[ "$suffix" =~ ^[0-9]+$ && "$suffix" -gt "$max" ]]; then
+                max=$suffix
+              fi
+            done
+            new_tag="$base.$((max + 1))"
+          fi
+
+          echo "New tag: $new_tag"
+          echo "new_tag=$new_tag" >> $GITHUB_OUTPUT
+
+      - name: Create and push new tag
+        run: |
+          git config user.name "github-actions"
+          git config user.email "github-actions@github.com"
+          git tag ${{ steps.next_tag.outputs.new_tag }}
+          git push origin ${{ steps.next_tag.outputs.new_tag }}

coffea_casa-2025.11.25.2/.github/workflows/charts-lint.yml_

@@ -0,0 +1,36 @@
+name: Lint and Test Charts
+
+on:
+  pull_request:
+
+jobs:
+  lint-test:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v2
+        with:
+          fetch-depth: 0
+
+      - name: Set up Helm
+        uses: azure/setup-helm@v1
+        with:
+          version: v3.5.3
+
+      - uses: actions/setup-python@v2
+        with:
+          python-version: 3.7
+
+      - name: Set up chart-testing
+        uses: helm/chart-testing-action@v2.1.0
+
+      - name: Run chart-testing (list-changed)
+        id: list-changed
+        run: |
+          changed=$(ct list-changed)
+          if [[ -n "$changed" ]]; then
+            echo "::set-output name=changed::true"
+          fi
+
+      - name: Run chart-testing (lint)
+        run: ct lint --check-version-increment=false --validate-maintainers=false

coffea_casa-2025.11.25.2/.github/workflows/charts-publish.yml_

@@ -0,0 +1,43 @@
+# This is a GitHub workflow defining a set of jobs with a set of steps. ref:
+# https://docs.github.com/en/free-pro-team@latest/actions/reference/workflow-syntax-for-github-actions
+#
+# This workflow package and publishes the Helm charts to Helm repository living
+# inside the gh-pages branch of this git repository.
+#
+# Create a tag (on devel) or create release
+name: Publish charts
+
+on:
+  push:
+    tags: ["*"]
+
+defaults:
+  run:
+    shell: bash
+    
+jobs:
+  release:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v2
+        with:
+          fetch-depth: 0
+
+      - name: Configure Git
+        run: |
+          git config user.name "$GITHUB_ACTOR"
+          git config user.email "$GITHUB_ACTOR@users.noreply.github.com"
+
+      - name: Install Helm
+        uses: azure/setup-helm@v1
+        with:
+          version: v3.4.0
+
+      - name: Run chart-releaser
+        uses: helm/chart-releaser-action@v1.2.1
+        env:
+          CR_TOKEN: "${{ secrets.GH_TOKEN }}"
+        with:
+          charts_dir: charts
+          charts_repo_url: https://coffeateam.github.io/coffea-casa/

coffea_casa-2025.11.25.2/.github/workflows/charts-test-k3d.yaml_

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+# This is a GitHub workflow defining a set of jobs with a set of steps.
+# ref: https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions
+#
+name: Test chart
+
+# Trigger the workflow's on all PRs and pushes so that other contributors can
+# run tests in their own forks. Avoid triggering these tests on changes to
+# documentation only changes.
+on:
+  pull_request:
+    paths-ignore:
+      - "docs/**"
+      - "docs-img/**"
+      - "**.md"
+      - ".github/workflows/*"
+      - "!.github/workflows/charts-test.yaml"
+  push:
+    paths-ignore:
+      - "docs/**"
+      - "docs-img/**"
+      - "**.md"
+      - ".github/workflows/*"
+      - "!.github/workflows/charts-test.yaml"
+    branches-ignore:
+      - "dependabot/**"
+      - "pre-commit-ci-update-config"
+      - "update-*"
+      - "vuln-scan-*"
+  workflow_dispatch:
+
+jobs:
+  
+  test:
+    runs-on: ubuntu-20.04
+    timeout-minutes: 20
+
+    strategy:
+      # Keep running even if one variation of the job fail
+      fail-fast: false
+      matrix:
+        # We run this job multiple times with different parameterization
+        # specified below, these parameters have no meaning on their own and
+        # gain meaning on how job steps use them.
+        #
+        # k3s-version: https://github.com/rancher/k3s/tags
+        # k3s-channel: https://update.k3s.io/v1-release/channels
+        include:
+          # FIXME: enable when we update jupyterhub version
+          # TODO: add more complex matrix
+          #- k3s-channel: latest
+          #  test: install
+          #- k3s-channel: stable
+          #  test: install
+          - k3s-channel: v1.20
+            test: install
+          - k3s-channel: v1.21 
+            test: install
+          - k3s-channel: v1.22
+            test: install
+          - k3s-channel: v1.23
+            test: install
+
+    steps:
+      - uses: actions/checkout@v3
+        with:
+          # chartpress requires git history to set chart version and image tags
+          # correctly
+          fetch-depth: 0
+
+      # Starts a k8s cluster with NetworkPolicy enforcement and installs both
+      # kubectl and helm
+      #
+      # ref: https://github.com/jupyterhub/action-k3s-helm/
+      - uses: jupyterhub/action-k3s-helm@v3
+        with:
+          k3s-channel: ${{ matrix.k3s-channel }}
+          metrics-enabled: false
+          traefik-enabled: false
+          docker-enabled: true
+
+      - uses: actions/setup-python@v4
+        with:
+          python-version: "3.9"
+
+      ## Install a local ACME server to fill the role of Let's Encrypt (LE). We
+      ## do this as the HTTP challenge sent out by an ACME server must be able to
+      ## reach the ACME client in our autohttps pod.
+      #- name: Install local ACME server
+      #  run: |
+      #    helm install pebble --repo https://jupyterhub.github.io/helm-chart/ pebble --values ./charts/coffea-casa/pebble-config.yaml
+      
+      # Build our images if needed and update values.yaml with the tags
+      #- name: Install and run chartpress
+      #  run: |
+      #    pip3 install -r charts/dev-requirements.txt
+      #    cd charts && chartpress
+      #  env:
+      #    DOCKER_BUILDKIT: "1"
+
+      # Generate values.schema.json from schema.yaml
+      #- name: Generate values.schema.json from schema.yaml
+      #  run: |
+      #    tools/generate-json-schema.py
+
+      - name: Await successful startup of Kubernetes workloads
+        uses: jupyterhub/action-k8s-await-workloads@v1
+        with:
+          timeout: 150
+          max-restarts: 1
+
+      - name: "Check if the Helm dependencies are pulled"
+        run: |
+          cd charts/coffea-casa && helm dependency build
+
+
+      - name: "Install local chart"
+        run: |
+          helm upgrade --install coffea-casa ./charts/coffea-casa --values charts/coffea-casa/values.yaml
+
+      - name: "Await local chart"
+        uses: jupyterhub/action-k8s-await-workloads@v2
+        with:
+          timeout: 900
+          max-restarts: 1
+
+      #- name: Await local chart cert acquisition
+      #  run: |
+      #    . ./ci/common
+      #    await_autohttps_tls_cert_acquisition
+
+      - name: Run tests
+        continue-on-error: ${{ matrix.accept-failure == true }}
+        run: |
+          export HUB_URL=http://localhost:30080
+          pytest --verbose --color=yes ./tests-charts
+
+      # ref: https://github.com/jupyterhub/action-k8s-namespace-report
+      - name: Kubernetes namespace report
+        uses: jupyterhub/action-k8s-namespace-report@v1
+        if: always()
+        with:
+          important-workloads: deploy/hub deploy/proxy

coffea_casa-2025.11.25.2/.github/workflows/charts-test-minikube.yaml_

@@ -0,0 +1,112 @@
+name: Test chart
+
+on:
+  pull_request:
+    paths-ignore:
+      - "docs/**"
+      - "docs-img/**"
+      - "**.md"
+      - ".github/workflows/*"
+      - "!.github/workflows/charts-test.yaml"
+  push:
+    paths-ignore:
+      - "docs/**"
+      - "docs-img/**"
+      - "**.md"
+      - ".github/workflows/*"
+      - "!.github/workflows/charts-test.yaml"
+    branches-ignore:
+      - "dependabot/**"
+      - "pre-commit-ci-update-config"
+      - "update-*"
+      - "vuln-scan-*"
+  workflow_dispatch:
+
+jobs:
+  
+  test-local:
+    name: Test local chart deployment (minikube)
+    timeout-minutes: 90
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v3
+        with:
+          # chartpress requires git history to set chart version and image tags
+          # correctly
+          fetch-depth: 0
+
+      - uses: actions/setup-python@v4
+        with:
+          python-version: "3.9"
+
+      - uses: azure/setup-helm@v3
+        with:
+          version: "v3.9.1"
+
+      - name: Setup Minikube-Kubernetes
+        uses: manusa/actions-setup-minikube@v2.7.2
+        with:
+          minikube version: "v1.28.0"
+          kubernetes version: "v1.24.5"
+          github token: ${{ secrets.GITHUB_TOKEN }}
+          driver: docker
+          start args: --ports=127.0.0.1:30080:30080
+
+      # Build our images if needed and update values.yaml with the tags
+      - name: Install and run chartpress
+        run: |
+          pip install -r charts/dev-requirements.txt
+      #   eval $(minikube -p minikube docker-env)
+      #    cd charts && chartpress
+      #  env:
+      #    DOCKER_BUILDKIT: "1"
+
+      # Generate values.schema.json from schema.yaml
+      #- name: Generate values.schema.json from schema.yaml
+      #  run: |
+      #    tools/generate-json-schema.py
+
+      - name: "Check if the Helm dependencies are pulled"
+        run: |
+          cd charts/coffea-casa && helm dependency build
+
+      - name: "Install local chart"
+        run: |
+          helm upgrade --install coffea-casa ./charts/coffea-casa --values charts/coffea-casa/values.yaml
+          
+      - name: "Await local chart deployment"
+        run: |
+          minikube kubectl -- wait --for condition=Available=True --timeout=200s deployment/hub
+
+      #- name: Await local chart cert acquisition
+      #  run: |
+      #    . ./ci/common
+      #    await_autohttps_tls_cert_acquisition
+
+      - name: Run tests
+        run: |
+          export HUB_URL=http://localhost:30080
+          pytest --verbose --color=yes ./tests-charts
+
+      - name: Output some logs in case of failure
+        if: ${{ failure() }}
+        # add set -x to print commands before executing to make logs reading easier
+        run: |
+          set -x
+          minikube ip
+          minikube logs
+          minikube kubectl -- get all
+          minikube kubectl -- get all -o yaml
+          minikube kubectl -- describe pods
+          minikube kubectl -- get cm
+          minikube kubectl -- get cm -o yaml
+          minikube kubectl -- get secrets
+          minikube kubectl -- get secrets -o yaml
+          minikube kubectl -- get pvc
+          minikube kubectl -- get pv
+          set +x
+
+      # Enable tmate debugging of manually-triggered workflows if the input option was provided
+      - name: Setup tmate session
+        uses: mxschmitt/action-tmate@v3
+        if: ${{ github.event_name == 'workflow_dispatch' && github.event.inputs.debug_enabled == 'true' }}

coffea_casa-2025.11.25.2/.github/workflows/dockercd-dev.yml

@@ -0,0 +1,86 @@
+name: Push tag of docker images
+
+on:
+  release:
+    types:
+      - published
+  push:
+    paths:
+      - docker/**
+    branches:
+      - master
+  workflow_dispatch:
+
+env:
+  PROJECT: 'coffea-casa'
+  GITHUB_ACTIONS: 'true'
+  REGISTRY: 'hub.opensciencegrid.org'
+
+jobs:
+  matrix-build:
+    strategy:
+      fail-fast: false
+      matrix:
+        image: [cc-dask-alma9, cc-analysis-alma9, cc-dask-combine-alma9, cc-analysis-combine-alma9]        
+    name: ${{ matrix.image }}
+    runs-on: ubuntu-latest
+    steps:
+
+      - name: Identify event type
+        run: |
+          echo "Triggered by: ${{ github.event_name }}"
+
+      - name: Generate tags
+        id: tags
+        env:
+          image: ${{ env.REGISTRY }}/coffea-casa/${{ matrix.image }}
+          release: ${{ github.event.release.tag_name }}
+          GITHUB_EVENT_NAME: ${{ github.event_name }}
+        run: |
+          if [ "${GITHUB_EVENT_NAME}" == "release" ]; then
+            tag="${image}:${release}"
+            tags=$tag
+            releasetag=$release
+          else
+            tag="${image}:development"
+            tags=$tag
+            releasetag="development"
+          fi
+          echo "tag=$tag"
+          echo "tags=$tags"
+          echo "releasetag=$releasetag"
+
+          # Set outputs using the environment file
+          echo "tags=$tags" >> "$GITHUB_OUTPUT"
+          echo "releasetag=$releasetag" >> "$GITHUB_OUTPUT"
+
+      - name: Check out code
+        uses: actions/checkout@v4
+      - name: Set up QEMU
+        uses: docker/setup-qemu-action@v2
+      - name: Set up Docker Buildx
+        id: buildx
+        uses: docker/setup-buildx-action@v2
+        with:
+          version: latest
+          driver-opts: network=host
+      - name: Login to Harbor Hub
+        if: success() && github.event_name != 'pull_request'
+        uses: docker/login-action@v2
+        with:
+          registry: hub.opensciencegrid.org
+          username: ${{ secrets.HARBOR_USER }}
+          password: ${{ secrets.HARBOR_PASSWORD }}
+      - name: Build and push
+        uses: docker/build-push-action@v3.0.0
+        with:
+          context: docker/
+          file: docker/Dockerfile.${{ matrix.image }}
+          platforms: linux/amd64
+          tags: ${{ steps.tags.outputs.tags }}
+          push: true
+          build-args: |
+            TAG=${{ steps.tags.outputs.releasetag }}
+            PROJECT=${{ env.PROJECT }} 
+            GITHUB_ACTIONS=${{ env.GITHUB_ACTIONS }}
+            REGISTRY=${{ env.REGISTRY }}

coffea_casa-2025.11.25.2/.github/workflows/dockerci-dev.yml

@@ -0,0 +1,63 @@
+name: Test docker images
+
+on:
+  pull_request:
+    paths:
+      - docker/**
+    branches:
+      - master
+  workflow_dispatch:
+
+env:
+  PROJECT: 'coffea-casa'
+  GITHUB_ACTIONS: 'true'
+  REGISTRY: 'hub.opensciencegrid.org'
+
+jobs:
+  matrix-build:
+    strategy:
+      fail-fast: false
+      matrix:
+        image: [cc-dask-alma9, cc-analysis-alma9, cc-dask-combine-alma9, cc-analysis-combine-alma9]
+        # Keep this line in sync with gh actions @ coffea-dask repo
+        # python: [3.8, 3.9, '3.10']
+        #exclude:
+        #  - image: cc7
+        #    python: 3.8           
+    name: ${{ matrix.image }}
+    runs-on: ubuntu-latest
+    steps:
+      - name: Fetch current date (with timestamp)
+        id: date
+        run: |
+          echo "::set-output name=date::$(date +"%Y-%m-%d_%H-%M-%S")"
+      - name: Check out code
+        uses: actions/checkout@v2
+      - name: Set up QEMU
+        uses: docker/setup-qemu-action@v2
+      - name: Set up Docker Buildx
+        id: buildx
+        uses: docker/setup-buildx-action@v2
+        with:
+          version: latest
+          driver-opts: network=host
+      - name: Login to Harbor Hub
+        if: success() && github.event_name != 'pull_request'
+        uses: docker/login-action@v2
+        with:
+          registry: hub.opensciencegrid.org
+          username: ${{ secrets.HARBOR_USER }}
+          password: ${{ secrets.HARBOR_PASSWORD }}
+      - name: Build and push
+        uses: docker/build-push-action@v3.0.0
+        with:
+          context: docker/
+          file: docker/Dockerfile.${{ matrix.image }}
+          push: ${{  github.event_name == 'push' }}
+          platforms: linux/amd64
+          tags: ${{ env.REGISTRY }}/coffea-casa/${{ matrix.image }}:${{ steps.date.outputs.date }}
+          build-args: |
+            TAG=${{ steps.date.outputs.date }} 
+            PROJECT=${{ env.PROJECT }} 
+            GITHUB_ACTIONS=${{ env.GITHUB_ACTIONS }}
+            REGISTRY=${{ env.REGISTRY }}

coffea_casa-2025.11.25.2/.github/workflows/pypi-ci.yml

@@ -0,0 +1,68 @@
+name: CI/CD
+
+on:
+  push:
+    paths:
+      - 'coffea_casa/**'
+    branches:
+      - master
+  pull_request:
+    paths:
+      - 'coffea_casa/**'
+    branches:
+      - master
+      - develop
+      
+jobs:
+  linter:
+
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: [ubuntu-latest]
+        python-version: ["3.11"]
+    name: linter - flake8 - python ${{ matrix.python-version }}
+
+    steps:
+    - uses: actions/checkout@master
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v1
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Lint with flake8
+      run: |
+        python -m pip install -q flake8
+      #  flake8 coffea_casa
+  test:
+
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: [ubuntu-latest] #
+        python-version: ["3.8", "3.9", "3.10", "3.11"]
+    name: test coffea_casa (${{ matrix.os }}) - python ${{ matrix.python-version }}
+
+    steps:
+    - uses: actions/checkout@master
+    - run: |
+        git fetch --no-tags --prune --depth=1 origin +refs/heads/*:refs/remotes/origin/*
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v1
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Set up Conda (Linux/MacOS)
+      if: matrix.os != 'windows-latest'
+      uses: conda-incubator/setup-miniconda@v2
+      with:
+        auto-update-conda: true
+        python-version: ${{ matrix.python-version }}
+        miniconda-version: 'latest'
+    - name: Install dependencies
+      if: matrix.os != 'windows-latest'
+      run: |
+        python -m pip install -q --upgrade pip setuptools setuptools_scm wheel six pytest codecov dask distributed
+        python -m pip install -q -e .
+        python -m pip list
+    - name: Test with pytest
+      run: |
+        coverage run -m pytest

coffea_casa-2025.11.25.2/.github/workflows/pypi-tag-deploy.yml

@@ -0,0 +1,34 @@
+name: Deploy to PyPI
+
+on:
+  workflow_dispatch:
+  release:
+    types:
+      - published
+
+jobs:
+  build-and-inspect-package:
+    name: Build & inspect package.
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: hynek/build-and-inspect-python-package@v2
+
+  upload-to-pypi:
+    name: Upload package to PyPI
+    needs: build-and-inspect-package
+    environment:
+      name: pypi
+      url: https://pypi.org/project/coffea-casa/
+    runs-on: ubuntu-latest
+    permissions:
+      # IMPORTANT: this permission is mandatory for trusted publishing, but
+      # should NOT be granted anywhere else!
+      id-token: write
+    steps:
+      - name: Download built artifact to dist/
+        uses: actions/download-artifact@v4
+        with:
+          name: Packages
+          path: dist
+      - uses: pypa/gh-action-pypi-publish@release/v1