codingest 0.2.7__tar.gz → 0.2.9__tar.gz

{codingest-0.2.7 → codingest-0.2.9}/Cargo.lock

@@ -308,7 +308,7 @@ dependencies = [
 
 [[package]]
 name = "codingest"
-version = "0.2.7"
+version = "0.2.9"
 dependencies = [
  "aho-corasick",
  "base64 0.22.1",
@@ -344,7 +344,7 @@ dependencies = [
 
 [[package]]
 name = "codingest-cli"
-version = "0.2.7"
+version = "0.2.9"
 dependencies = [
  "anyhow",
  "clap",
@@ -356,7 +356,7 @@ dependencies = [
 
 [[package]]
 name = "codingest-mcp"
-version = "0.2.7"
+version = "0.2.9"
 dependencies = [
  "anyhow",
  "codingest",
@@ -365,7 +365,7 @@ dependencies = [
 
 [[package]]
 name = "codingest-py"
-version = "0.2.7"
+version = "0.2.9"
 dependencies = [
  "codingest",
  "codingest-cli",
@@ -1392,12 +1392,13 @@ dependencies = [
 
 [[package]]
 name = "kglite"
-version = "0.16.7"
+version = "0.16.12"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "52ad0bb585ce66fea7444c3d07b7ea814ffc11982467e2153f7d2bac8825f975"
+checksum = "5a849c74d23c785f96e42189be38a3a973021bf6ab16c1846652419b296b39e4"
 dependencies = [
  "bzip2",
  "chrono",
+ "crc32fast",
  "csv",
  "flate2",
  "fs2",
@@ -1427,9 +1428,9 @@ dependencies = [
 
 [[package]]
 name = "kglite-mcp-server"
-version = "0.16.7"
+version = "0.16.12"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "20b0d3d8b3e616958bc4bcc06e5d95da6d4f1c48f64fb3ec2d95227f7e888845"
+checksum = "a24b79083c1f915afbbb6c3a2601893e06beaef80c736d51ddbbc30b7c18a87b"
 dependencies = [
  "anyhow",
  "bytes",

{codingest-0.2.7 → codingest-0.2.9}/Cargo.toml

@@ -3,7 +3,7 @@ members = ["crates/codingest", "crates/codingest-cli", "crates/codingest-mcp", "
 resolver = "2"
 
 [workspace.package]
-version = "0.2.7"
+version = "0.2.9"
 edition = "2021"
 rust-version = "1.88"
 license = "MIT"
@@ -12,8 +12,61 @@ repository = "https://github.com/kkollsga/codingest"
 [workspace.dependencies]
 base64 = "0.22"
 sha2 = "0.11"
-# kglite engine + MCP server — imported as crates.io libraries. The 0.16.7
-# floor is a LOCKSTEP REFRESH (same pattern as 0.16.5, below): 0.16.7 converts
+# kglite engine + MCP server — imported as crates.io libraries. The 0.16.12
+# floor is a LOCKSTEP REFRESH over three upstream releases, all of which are
+# opt-in surface codingest does not opt into:
+#   * 0.16.12 is entirely INSIDE the 0.16.11 ontology declaration layer:
+#     `required_properties`/`property_types` were parsed and persisted but
+#     never checked (they now emit audit rows), `inverse_name` stopped
+#     auto-enrolling the physical-inverse check (it is a reading-direction
+#     alias; opt in with `inverse_enforced: true`), and `enforcement` gained a
+#     per-check `{check: severity}` map. Every one of those reaches a graph
+#     only through a declaration codingest never installs — nothing here calls
+#     `define_ontology`, so there is no declaration to audit, no blueprint gate
+#     to fail, and no `SHOW ONTOLOGY` row to render.
+#   * 0.16.11 adds the ontology declaration layer (`define_ontology`,
+#     `materialize_ontology`, `SHOW ONTOLOGY`, `ontology_audit`), structured
+#     table properties, and `MATCH (n:A|B)` label alternation. All three are
+#     DECLARED features — a graph that declares none is byte-identical and
+#     queries identically, and codingest declares none (see the standing ask in
+#     inbox to emit a code-graph ontology: a FEATURE, not part of this floor).
+#     Its one broad fix, `vacuum()` corrupting secondary labels, cannot reach us
+#     — the builder never adds a secondary label and never vacuums. `describe()`
+#     grew an `<ontology>` section (absent when nothing is declared) and a
+#     sample-inferred `shape=` per property; the six rule procedures gained a
+#     `rule` column, and codingest calls none of them.
+#   * 0.16.10 is the BM25 text index (`build_text_index` / `text_bm25` /
+#     `score_fuse`), vector-index catch-up, and the MCP `--parallel` /
+#     `extensions.parallel` opt-in codingest asked for on 2026-08-22 — which
+#     codingest-mcp inherits for free as a thin frontend over
+#     kglite-mcp-server, off unless an operator turns it on. Its `.kgl` text-
+#     index section is a rebuildable cache: a graph with no text index writes
+#     byte-identical files and older files load unchanged, so the frozen
+#     goldens hold. Two engine fixes land under us without a source change: a
+#     `LIMIT` on an aggregating RETURN grouped by a node property silently
+#     dropped rows, and a second `vector_score()`/`text_score()` in one query
+#     returned the first call's score. `size()` on a bracket-delimited string
+#     now counts characters, not JSON elements. Its Rust REMOVALS — the `spec`
+#     parameter of `api::io::save_subset`, `EmbeddingStore::index` as a public
+#     field, `build_vector_index`'s new trailing `auto_refresh_limit` — name no
+#     symbol codingest uses (we import DirGraph, GraphRead, io::{load_file,
+#     save_graph, write_kgl, prepare_kgl_write}, mutation::{add_nodes,
+#     extend_graph}, param::kglite_value_to_json, session, code_entities,
+#     datatypes).
+# Evidence is the gate: build/clippy/`cargo test` incl. `golden_parity` green
+# across the bump with zero source changes.
+# It sits on the 0.16.9
+# floor, itself a LOCKSTEP REFRESH: 0.16.9 replaces the software CRC32 in `.kgl`
+# section verification with crc32fast (loads of digest-carrying files ~1.6x
+# faster; digest VALUES unchanged, byte-identical files, golden digests do not
+# move), and 0.16.8 is engine correctness fixes — count(DISTINCT <rel var>),
+# aggregating WITH+LIMIT pushdown, composite-index key order, mapped-storage
+# property staleness — none of which reaches a query or API codingest ships
+# (our one count(DISTINCT …) counts a node variable). Python-side,
+# `add_connections_internal` disappeared from the class; codingest never
+# called it.
+# It sits on the 0.16.7
+# floor, a lockstep refresh in the same pattern (as was 0.16.5): 0.16.7 converts
 # a family of Python-facing silent-wrong-answer paths into typed errors
 # (`as_dict` removal; collision-raising `degrees()`/`embeddings()`/
 # `to_networkx()`; `compare()` traversal errors as `kglite.ArgumentError`) —
@@ -99,7 +152,7 @@ sha2 = "0.11"
 # which kglite 0.15.14 and earlier refuse by version number. Because
 # `codingest.build()` writes the bytes with the Rust engine compiled in here and
 # reads them back through the separately-installed Python `kglite` wheel, the
-# two sides must be on the same side of that break — hence `>=0.16.7,<0.17` in
+# two sides must be on the same side of that break — hence `>=0.16.12,<0.17` in
 # pyproject.toml, and hence a reader on 0.15.x is not "old but workable", it is
 # a hard failure with `FileFormatError`.
 # 0.16.0 also removed `DirGraph::enable_columnar` from the public API (every
@@ -164,8 +217,8 @@ sha2 = "0.11"
 # and no disk storage. Neither 0.15.7 nor 0.15.8 changes the `kglite::api` we
 # call, graph output, property encoding, or `.kgl` serialization.
 # Keep both libraries aligned so the graph and server share one engine release.
-kglite = { version = "0.16.7", default-features = false }
-kglite-mcp-server = { version = "0.16.7", default-features = false }
+kglite = { version = "0.16.12", default-features = false }
+kglite-mcp-server = { version = "0.16.12", default-features = false }
 
 # Mirror KGLite's release codegen so the standalone builder has
 # performance parity with the in-tree component (see KGLite

{codingest-0.2.7 → codingest-0.2.9}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: codingest
-Version: 0.2.7
+Version: 0.2.9
 Classifier: Development Status :: 3 - Alpha
 Classifier: Intended Audience :: Developers
 Classifier: Programming Language :: Python :: 3
@@ -12,7 +12,7 @@ Classifier: Programming Language :: Python :: 3.14
 Classifier: Programming Language :: Rust
 Classifier: Topic :: Software Development
 Classifier: Topic :: Software Development :: Libraries
-Requires-Dist: kglite>=0.16.7,<0.17
+Requires-Dist: kglite>=0.16.12,<0.17
 License-File: LICENSE
 Summary: Build fast, queryable code graphs for AI agents, MCP code review, and local or GitHub repository analysis.
 Keywords: ai-agents,mcp,code-review,knowledge-graph,code-analysis,github,tree-sitter,cypher
@@ -192,7 +192,7 @@ codingest skill install        # code-review Agent Skill
 ```
 
 The wheel bundles every grammar plus the `codingest` and `codingest-mcp`
-commands. KGLite ≥0.16.7 is installed automatically as the query/storage
+commands. KGLite ≥0.16.12 is installed automatically as the query/storage
 engine; its MCP server and the transitive `mcp-methods` framework power the
 builder-aware Codingest server. Nothing else needs to be installed.
 
@@ -205,7 +205,7 @@ Python prerequisites.
 ```toml
 [dependencies]
 codingest = "0.2"
-kglite = "0.16.7"
+kglite = "0.16.12"
 ```
 
 ```rust
@@ -277,7 +277,7 @@ diagnostic.
 ## Dependency policy
 
 `kglite` and `kglite-mcp-server` use matching crates.io requirements with a
-0.16.7 minimum and a shared lockfile. This keeps the builder, persistence
+0.16.12 minimum and a shared lockfile. This keeps the builder, persistence
 handoff, and embedded MCP server on one compatible engine patch line.
 
 ## Parity with the (now-removed) in-tree component

{codingest-0.2.7 → codingest-0.2.9}/README.md

@@ -165,7 +165,7 @@ codingest skill install        # code-review Agent Skill
 ```
 
 The wheel bundles every grammar plus the `codingest` and `codingest-mcp`
-commands. KGLite ≥0.16.7 is installed automatically as the query/storage
+commands. KGLite ≥0.16.12 is installed automatically as the query/storage
 engine; its MCP server and the transitive `mcp-methods` framework power the
 builder-aware Codingest server. Nothing else needs to be installed.
 
@@ -178,7 +178,7 @@ Python prerequisites.
 ```toml
 [dependencies]
 codingest = "0.2"
-kglite = "0.16.7"
+kglite = "0.16.12"
 ```
 
 ```rust
@@ -250,7 +250,7 @@ diagnostic.
 ## Dependency policy
 
 `kglite` and `kglite-mcp-server` use matching crates.io requirements with a
-0.16.7 minimum and a shared lockfile. This keeps the builder, persistence
+0.16.12 minimum and a shared lockfile. This keeps the builder, persistence
 handoff, and embedded MCP server on one compatible engine patch line.
 
 ## Parity with the (now-removed) in-tree component

{codingest-0.2.7 → codingest-0.2.9}/crates/codingest/Cargo.toml

@@ -10,7 +10,7 @@ keywords = ["knowledge-graph", "code-analysis", "tree-sitter", "cypher", "kglite
 categories = ["development-tools", "parser-implementations"]
 
 # Requires the kglite 0.15 engine API (`kglite::api::code_entities`); the
-# workspace pins the current engine floor (0.16.7).
+# workspace pins the current engine floor (0.16.12).
 
 [lib]
 name = "codingest"

{codingest-0.2.7 → codingest-0.2.9}/crates/codingest-cli/Cargo.toml

@@ -14,7 +14,7 @@ name = "codingest"
 path = "src/main.rs"
 
 [dependencies]
-codingest = { version = "0.2.7", path = "../codingest" }
+codingest = { version = "0.2.9", path = "../codingest" }
 kglite = { workspace = true }
 anyhow = "1.0.104"
 clap = { version = "4.6.4", features = ["derive"] }

{codingest-0.2.7 → codingest-0.2.9}/crates/codingest-mcp/Cargo.toml

@@ -14,6 +14,6 @@ name = "codingest-mcp"
 path = "src/main.rs"
 
 [dependencies]
-codingest = { version = "0.2.7", path = "../codingest" }
+codingest = { version = "0.2.9", path = "../codingest" }
 kglite-mcp-server = { workspace = true }
 anyhow = "1.0.104"

{codingest-0.2.7 → codingest-0.2.9}/crates/codingest-py/Cargo.toml

@@ -42,7 +42,7 @@ doctest = false
 pyo3 = { version = "0.29" }
 # The engine-free builder (parsers, call/type/route edges, rev merge, repo
 # clone, manifest reader). Docs pass gated by this crate's `docs` feature.
-codingest = { version = "0.2.7", path = "../codingest", default-features = false }
+codingest = { version = "0.2.9", path = "../codingest", default-features = false }
 # `.kgl` persistence (`kglite::api::io::save_graph`) for the serialize half of
 # the build-then-load handoff, plus the `DirGraph` type the builder returns.
 kglite = { workspace = true }
@@ -53,9 +53,9 @@ tempfile = "3.27.0"
 # through `_run_cli`, so `pip install codingest` also installs the `codingest`
 # command without a second wheel or a duplicated builder build. Mirrors
 # kglite-py's `kglite-cli` bundling.
-codingest-cli = { version = "0.2.7", path = "../codingest-cli" }
+codingest-cli = { version = "0.2.9", path = "../codingest-cli" }
 # Source-building MCP composition. The graph server and generic MCP lifecycle
 # remain owned by its existing kglite-mcp-server -> mcp-methods Rust dependency
 # chain; linking this thin library into the extension gives pip users the same
 # builder-aware server as the standalone `codingest-mcp` binary.
-codingest-mcp = { version = "0.2.7", path = "../codingest-mcp" }
+codingest-mcp = { version = "0.2.9", path = "../codingest-mcp" }

{codingest-0.2.7 → codingest-0.2.9}/crates/codingest-py/src/lib.rs

@@ -73,7 +73,8 @@ fn load_via_kglite(py: Python<'_>, path: &Path) -> PyResult<Py<PyAny>> {
     let kglite = py.import("kglite").map_err(|e| {
         PyRuntimeError::new_err(format!(
             "codingest.build() returns a kglite.KnowledgeGraph, but importing \
-             `kglite` failed ({e}). Install it: `pip install kglite>=0.16.6`."
+             `kglite` failed ({e}). Install it: `pip install \
+             'kglite>=0.16.12,<0.17'`."
         ))
     })?;
     let graph = kglite.call_method1("load", (path.to_string_lossy().as_ref(),))?;

{codingest-0.2.7 → codingest-0.2.9}/pyproject.toml

@@ -42,9 +42,9 @@ dynamic = ["version"]
 # minor releases (e.g. the v3->v4 break, which refuses old files outright), so
 # pip must never be free to pair our writer with a reader from a different
 # minor. This range therefore mirrors the Cargo semver range for the pin above
-# (`version = "0.16.7"` == `>=0.16.7,<0.17.0`) exactly — bump both together.
+# (`version = "0.16.12"` == `>=0.16.12,<0.17.0`) exactly — bump both together.
 dependencies = [
-    "kglite>=0.16.7,<0.17",
+    "kglite>=0.16.12,<0.17",
 ]
 
 [project.urls]