codingest 0.2.15__tar.gz → 0.2.16__tar.gz

{codingest-0.2.15 → codingest-0.2.16}/Cargo.lock

@@ -302,7 +302,7 @@ dependencies = [
 
 [[package]]
 name = "codingest"
-version = "0.2.15"
+version = "0.2.16"
 dependencies = [
  "aho-corasick",
  "base64 0.22.1",
@@ -338,7 +338,7 @@ dependencies = [
 
 [[package]]
 name = "codingest-cli"
-version = "0.2.15"
+version = "0.2.16"
 dependencies = [
  "anyhow",
  "clap",
@@ -350,7 +350,7 @@ dependencies = [
 
 [[package]]
 name = "codingest-mcp"
-version = "0.2.15"
+version = "0.2.16"
 dependencies = [
  "anyhow",
  "codingest",
@@ -359,7 +359,7 @@ dependencies = [
 
 [[package]]
 name = "codingest-py"
-version = "0.2.15"
+version = "0.2.16"
 dependencies = [
  "codingest",
  "codingest-cli",
@@ -1366,9 +1366,9 @@ dependencies = [
 
 [[package]]
 name = "kglite"
-version = "0.16.20"
+version = "0.16.22"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "994cc3d33bc74e6eb248eeb93c33c3b64ed70a6d587798ad22849d91fc49c447"
+checksum = "fd64dd197a566f9803177f8ad4ceeacd99a0c5c213462170a946446249233d58"
 dependencies = [
  "bzip2",
  "chrono",
@@ -1402,9 +1402,9 @@ dependencies = [
 
 [[package]]
 name = "kglite-mcp-server"
-version = "0.16.20"
+version = "0.16.22"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "9e8daafc887ec2144e987e7dc9f034c674df8460fd6a5eb4cad22d406e473952"
+checksum = "c471846a12ea97a285131f3655c73f49495609ce63d3cbba263616fc5a10bf87"
 dependencies = [
  "anyhow",
  "bytes",

{codingest-0.2.15 → codingest-0.2.16}/Cargo.toml

@@ -3,7 +3,7 @@ members = ["crates/codingest", "crates/codingest-cli", "crates/codingest-mcp", "
 resolver = "2"
 
 [workspace.package]
-version = "0.2.15"
+version = "0.2.16"
 edition = "2021"
 rust-version = "1.88"
 license = "MIT"
@@ -12,9 +12,50 @@ repository = "https://github.com/kkollsga/codingest"
 [workspace.dependencies]
 base64 = "0.22"
 sha2 = "0.11"
-# kglite engine + MCP server — imported as crates.io libraries. The 0.16.20
-# floor renames the MCP identity counter and makes a clean save a no-op.
-# Where it lands for us:
+# kglite engine + MCP server — imported as crates.io libraries. The 0.16.22
+# floor spans two upstream releases: codingest never took 0.16.21, so 0.16.21
+# and 0.16.22 land here together. Where they land for us:
+#   * kglite-mcp-server (embedded unchanged via codingest-mcp's
+#     run_with_extensions): a `skills:` pack declared in a manifest but missing
+#     on disk now FAILS the boot. It used to fail the whole registry build and
+#     boot anyway with every skill gone — the bundled methodology included —
+#     while the graph tools answered normally and `--selftest` printed PASSED;
+#     `--selftest` now also prints the number of skills the session serves.
+#     codingest ships no manifest and declares no skills pack, so no server we
+#     start can reach it, but an operator manifest pointed at codingest-mcp can.
+#     `save_graph(force: true)` now requires the write opt-in (`--writable` or
+#     `extensions.writable: true`) and is refused on a server that registers
+#     `save_graph` alone via `builtins.save_graph: true`; a save that persisted
+#     only boot configuration says so instead of reporting a node count nothing
+#     moved, and a refused save on a clean server says "Nothing was changed
+#     here" rather than claiming unsaved changes are still queryable. The lease
+#     record's `since=` / `released=` move to second-precision UTC (older
+#     local-offset records still parse).
+#   * kglite core: additive for us, breaking for callers we are not.
+#     `KgError::CypherTimeout` gains a `message` field and real
+#     `elapsed_ms`/`limit_ms`, and a fired deadline now raises
+#     `CypherTimeoutError` instead of `CypherExecutionError` — codingest names
+#     no `KgError` variant and catches no kglite Python exception, so the
+#     retyping reaches our users only through kglite's own surface (a
+#     `codingest query --timeout` that fires reports through kglite's error,
+#     whose class changed). `ServerExtensions::read_only()` and
+#     `kglite::api::introspection::TypeCapabilities` are new and uncalled here;
+#     `ServerExtensions::default().with_workspace_graph(...)` is a builder
+#     chain, so a struct that gained a field is not a literal break for us.
+#     The blueprint spec structs (`Blueprint`, `Settings`, `NodeSpec`, `FkEdge`,
+#     `JunctionEdge`) gained fields and `JunctionEdge::target` became
+#     `Vec<String>` — a struct-literal break codingest cannot hit: it builds no
+#     blueprint and calls neither `from_blueprint` nor `from_records`, so the
+#     now-honoured `on_missing_endpoint` spec key changes nothing here either.
+#     Ranked retrieval (`text_bm25`, `vector_score`) on an unindexed property
+#     now raises instead of answering zero rows, and `ontology_audit()` /
+#     `edge_property_violation()` each yield one more column — codingest calls
+#     none of them and pins no column set. `save_graph` / `write_kgl` /
+#     `prepare_kgl_write` — every persistence entry we call — are
+#     byte-identical, and the goldens prove it.
+# It sits on the 0.16.20
+# floor, which renames the MCP identity counter and makes a clean save a no-op.
+# Where that landed for us:
 #   * kglite-mcp-server (embedded unchanged via codingest-mcp's
 #     run_with_extensions): the `<active_graph>` header and the
 #     `— active graph:` footer now say `load="N"` / `· load N ·` instead of
@@ -388,8 +429,8 @@ sha2 = "0.11"
 # and no disk storage. Neither 0.15.7 nor 0.15.8 changes the `kglite::api` we
 # call, graph output, property encoding, or `.kgl` serialization.
 # Keep both libraries aligned so the graph and server share one engine release.
-kglite = { version = "0.16.20", default-features = false }
-kglite-mcp-server = { version = "0.16.20", default-features = false }
+kglite = { version = "0.16.22", default-features = false }
+kglite-mcp-server = { version = "0.16.22", default-features = false }
 
 # Dependency debuginfo capped at line tables (kglite coordination, 2026-08-31,
 # after unbounded debug trees filled the build-cache disk to zero): a

{codingest-0.2.15 → codingest-0.2.16}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: codingest
-Version: 0.2.15
+Version: 0.2.16
 Classifier: Development Status :: 3 - Alpha
 Classifier: Intended Audience :: Developers
 Classifier: Programming Language :: Python :: 3
@@ -12,7 +12,7 @@ Classifier: Programming Language :: Python :: 3.14
 Classifier: Programming Language :: Rust
 Classifier: Topic :: Software Development
 Classifier: Topic :: Software Development :: Libraries
-Requires-Dist: kglite>=0.16.20,<0.17
+Requires-Dist: kglite>=0.16.22,<0.17
 License-File: LICENSE
 Summary: Build fast, queryable code graphs for AI agents, MCP code review, and local or GitHub repository analysis.
 Keywords: ai-agents,mcp,code-review,knowledge-graph,code-analysis,github,tree-sitter,cypher
@@ -192,7 +192,7 @@ codingest skill install        # code-review Agent Skill
 ```
 
 The wheel bundles every grammar plus the `codingest` and `codingest-mcp`
-commands. KGLite ≥0.16.20 is installed automatically as the query/storage
+commands. KGLite ≥0.16.22 is installed automatically as the query/storage
 engine; its MCP server and the transitive `mcp-methods` framework power the
 builder-aware Codingest server. Nothing else needs to be installed.
 
@@ -205,7 +205,7 @@ Python prerequisites.
 ```toml
 [dependencies]
 codingest = "0.2"
-kglite = "0.16.20"
+kglite = "0.16.22"
 ```
 
 ```rust
@@ -277,7 +277,7 @@ diagnostic.
 ## Dependency policy
 
 `kglite` and `kglite-mcp-server` use matching crates.io requirements with a
-0.16.20 minimum and a shared lockfile. This keeps the builder, persistence
+0.16.22 minimum and a shared lockfile. This keeps the builder, persistence
 handoff, and embedded MCP server on one compatible engine patch line.
 
 ## Parity with the (now-removed) in-tree component

{codingest-0.2.15 → codingest-0.2.16}/README.md

@@ -165,7 +165,7 @@ codingest skill install        # code-review Agent Skill
 ```
 
 The wheel bundles every grammar plus the `codingest` and `codingest-mcp`
-commands. KGLite ≥0.16.20 is installed automatically as the query/storage
+commands. KGLite ≥0.16.22 is installed automatically as the query/storage
 engine; its MCP server and the transitive `mcp-methods` framework power the
 builder-aware Codingest server. Nothing else needs to be installed.
 
@@ -178,7 +178,7 @@ Python prerequisites.
 ```toml
 [dependencies]
 codingest = "0.2"
-kglite = "0.16.20"
+kglite = "0.16.22"
 ```
 
 ```rust
@@ -250,7 +250,7 @@ diagnostic.
 ## Dependency policy
 
 `kglite` and `kglite-mcp-server` use matching crates.io requirements with a
-0.16.20 minimum and a shared lockfile. This keeps the builder, persistence
+0.16.22 minimum and a shared lockfile. This keeps the builder, persistence
 handoff, and embedded MCP server on one compatible engine patch line.
 
 ## Parity with the (now-removed) in-tree component

{codingest-0.2.15 → codingest-0.2.16}/crates/codingest/Cargo.toml

@@ -10,7 +10,7 @@ keywords = ["knowledge-graph", "code-analysis", "tree-sitter", "cypher", "kglite
 categories = ["development-tools", "parser-implementations"]
 
 # Requires the kglite 0.15 engine API (`kglite::api::code_entities`); the
-# workspace pins the current engine floor (0.16.20).
+# workspace pins the current engine floor (0.16.22).
 
 [lib]
 name = "codingest"

{codingest-0.2.15 → codingest-0.2.16}/crates/codingest-cli/Cargo.toml

@@ -14,7 +14,7 @@ name = "codingest"
 path = "src/main.rs"
 
 [dependencies]
-codingest = { version = "0.2.15", path = "../codingest" }
+codingest = { version = "0.2.16", path = "../codingest" }
 kglite = { workspace = true }
 anyhow = "1.0.104"
 clap = { version = "4.6.4", features = ["derive"] }

{codingest-0.2.15 → codingest-0.2.16}/crates/codingest-mcp/Cargo.toml

@@ -14,6 +14,6 @@ name = "codingest-mcp"
 path = "src/main.rs"
 
 [dependencies]
-codingest = { version = "0.2.15", path = "../codingest" }
+codingest = { version = "0.2.16", path = "../codingest" }
 kglite-mcp-server = { workspace = true }
 anyhow = "1.0.104"

{codingest-0.2.15 → codingest-0.2.16}/crates/codingest-py/Cargo.toml

@@ -42,7 +42,7 @@ doctest = false
 pyo3 = { version = "0.29" }
 # The engine-free builder (parsers, call/type/route edges, rev merge, repo
 # clone, manifest reader). Docs pass gated by this crate's `docs` feature.
-codingest = { version = "0.2.15", path = "../codingest", default-features = false }
+codingest = { version = "0.2.16", path = "../codingest", default-features = false }
 # `.kgl` persistence (`kglite::api::io::save_graph`) for the serialize half of
 # the build-then-load handoff, plus the `DirGraph` type the builder returns.
 kglite = { workspace = true }
@@ -53,9 +53,9 @@ tempfile = "3.27.0"
 # through `_run_cli`, so `pip install codingest` also installs the `codingest`
 # command without a second wheel or a duplicated builder build. Mirrors
 # kglite-py's `kglite-cli` bundling.
-codingest-cli = { version = "0.2.15", path = "../codingest-cli" }
+codingest-cli = { version = "0.2.16", path = "../codingest-cli" }
 # Source-building MCP composition. The graph server and generic MCP lifecycle
 # remain owned by its existing kglite-mcp-server -> mcp-methods Rust dependency
 # chain; linking this thin library into the extension gives pip users the same
 # builder-aware server as the standalone `codingest-mcp` binary.
-codingest-mcp = { version = "0.2.15", path = "../codingest-mcp" }
+codingest-mcp = { version = "0.2.16", path = "../codingest-mcp" }

{codingest-0.2.15 → codingest-0.2.16}/crates/codingest-py/src/lib.rs

@@ -74,7 +74,7 @@ fn load_via_kglite(py: Python<'_>, path: &Path) -> PyResult<Py<PyAny>> {
         PyRuntimeError::new_err(format!(
             "codingest.build() returns a kglite.KnowledgeGraph, but importing \
              `kglite` failed ({e}). Install it: `pip install \
-             'kglite>=0.16.20,<0.17'`."
+             'kglite>=0.16.22,<0.17'`."
         ))
     })?;
     let graph = kglite.call_method1("load", (path.to_string_lossy().as_ref(),))?;

{codingest-0.2.15 → codingest-0.2.16}/pyproject.toml

@@ -42,9 +42,9 @@ dynamic = ["version"]
 # minor releases (e.g. the v3->v4 break, which refuses old files outright), so
 # pip must never be free to pair our writer with a reader from a different
 # minor. This range therefore mirrors the Cargo semver range for the pin above
-# (`version = "0.16.20"` == `>=0.16.20,<0.17.0`) exactly — bump both together.
+# (`version = "0.16.22"` == `>=0.16.22,<0.17.0`) exactly — bump both together.
 dependencies = [
-    "kglite>=0.16.20,<0.17",
+    "kglite>=0.16.22,<0.17",
 ]
 
 [project.urls]