codingest 0.2.13__tar.gz → 0.2.15__tar.gz

{codingest-0.2.13 → codingest-0.2.15}/Cargo.lock

@@ -302,7 +302,7 @@ dependencies = [
 
 [[package]]
 name = "codingest"
-version = "0.2.13"
+version = "0.2.15"
 dependencies = [
  "aho-corasick",
  "base64 0.22.1",
@@ -338,7 +338,7 @@ dependencies = [
 
 [[package]]
 name = "codingest-cli"
-version = "0.2.13"
+version = "0.2.15"
 dependencies = [
  "anyhow",
  "clap",
@@ -350,7 +350,7 @@ dependencies = [
 
 [[package]]
 name = "codingest-mcp"
-version = "0.2.13"
+version = "0.2.15"
 dependencies = [
  "anyhow",
  "codingest",
@@ -359,7 +359,7 @@ dependencies = [
 
 [[package]]
 name = "codingest-py"
-version = "0.2.13"
+version = "0.2.15"
 dependencies = [
  "codingest",
  "codingest-cli",
@@ -959,26 +959,20 @@ dependencies = [
 
 [[package]]
 name = "hashbrown"
-version = "0.16.1"
+version = "0.17.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "841d1cc9bed7f9236f321df977030373f4a4163ae1a7dbfe1a51a2c1a51d9100"
+checksum = "ed5909b6e89a2db4456e54cd5f673791d7eca6732202bbf2a9cc504fe2f9b84a"
 dependencies = [
  "foldhash 0.2.0",
 ]
 
-[[package]]
-name = "hashbrown"
-version = "0.17.1"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "ed5909b6e89a2db4456e54cd5f673791d7eca6732202bbf2a9cc504fe2f9b84a"
-
 [[package]]
 name = "hashlink"
-version = "0.11.1"
+version = "0.12.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "824e001ac4f3012dd16a264bec811403a67ca9deb6c102fc5049b32c4574b35f"
+checksum = "32069d97bb81e38fa67eab65e3393bf804bb85969f2bc06bf13f64aef5aba248"
 dependencies = [
- "hashbrown 0.16.1",
+ "hashbrown 0.17.1",
 ]
 
 [[package]]
@@ -1372,9 +1366,9 @@ dependencies = [
 
 [[package]]
 name = "kglite"
-version = "0.16.18"
+version = "0.16.20"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "3189d864d1d6b31c214dd15f2a300c2d067fa6a008140a71aea10b8846513ae4"
+checksum = "994cc3d33bc74e6eb248eeb93c33c3b64ed70a6d587798ad22849d91fc49c447"
 dependencies = [
  "bzip2",
  "chrono",
@@ -1408,9 +1402,9 @@ dependencies = [
 
 [[package]]
 name = "kglite-mcp-server"
-version = "0.16.18"
+version = "0.16.20"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1e8fa20ca384ec23de4ad7f6fa554ee87390e8ae67abfc4543989a4bc9f71cbe"
+checksum = "9e8daafc887ec2144e987e7dc9f034c674df8460fd6a5eb4cad22d406e473952"
 dependencies = [
  "anyhow",
  "bytes",
@@ -3229,9 +3223,9 @@ checksum = "1ffae5123b2d3fc086436f8834ae3ab053a283cfac8fe0a0b8eaae044768a4c4"
 
 [[package]]
 name = "yaml-rust2"
-version = "0.11.0"
+version = "0.12.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "631a50d867fafb7093e709d75aaee9e0e0d5deb934021fcea25ac2fe09edc51e"
+checksum = "c6edb26322e610d4f04b7cd34478317685d24d0999437e551fb97c5441151041"
 dependencies = [
  "arraydeque",
  "encoding_rs",

{codingest-0.2.13 → codingest-0.2.15}/Cargo.toml

@@ -3,7 +3,7 @@ members = ["crates/codingest", "crates/codingest-cli", "crates/codingest-mcp", "
 resolver = "2"
 
 [workspace.package]
-version = "0.2.13"
+version = "0.2.15"
 edition = "2021"
 rust-version = "1.88"
 license = "MIT"
@@ -12,8 +12,65 @@ repository = "https://github.com/kkollsga/codingest"
 [workspace.dependencies]
 base64 = "0.22"
 sha2 = "0.11"
-# kglite engine + MCP server — imported as crates.io libraries. The 0.16.18
-# floor is an MCP-server robustness release — every change lives in
+# kglite engine + MCP server — imported as crates.io libraries. The 0.16.20
+# floor renames the MCP identity counter and makes a clean save a no-op.
+# Where it lands for us:
+#   * kglite-mcp-server (embedded unchanged via codingest-mcp's
+#     run_with_extensions): the `<active_graph>` header and the
+#     `— active graph:` footer now say `load="N"` / `· load N ·` instead of
+#     `generation`, and gain a preceding `file_saved="<T>"` / `· file saved
+#     <T>` field — the served path's publish time, omitted for a workspace
+#     graph, which is every `--watch` / `set_root_dir` server. `reload_graph`
+#     says "Load N on this server." codingest parses none of that text
+#     (`git grep -n 'generation=\"\|· generation'` is empty here), so the
+#     rename reaches our users only as changed server output. A write-enabled
+#     server's `save_graph` is now a no-op ("Nothing to save: …") unless a
+#     boot-time manifest ontology is unpersisted or `force: true` is passed —
+#     codingest ships no manifest and declares no ontology, so the affected
+#     path is one an operator reaches by hand. `extensions.writable: true` is
+#     now equivalent to `--writable`; `builtins.save_graph: true` alone
+#     registers only `save_graph` and leaves `cypher_query` read-only (that
+#     was always true — 0.2.14's CHANGELOG entry here repeated the upstream
+#     docs' error and said it enabled writes). Unknown `extensions.*` keys
+#     warn at boot; every read on a `--writable` server now carries the
+#     identity footer it was missing.
+#   * kglite core: additive only. `kglite::api::io::GraphFileIdentity` gains
+#     `modified()`; a released `GraphWriterLease` appends `released=<time>`
+#     to `<path>.lock-owner`. codingest names neither type and reads no
+#     `.lock-owner`. `save_graph` / `write_kgl` / `prepare_kgl_write` — every
+#     persistence entry we call — are byte-identical, and the goldens prove
+#     it. The optional `fastembed` backend moved 5 -> 6; codingest enables no
+#     kglite features (`default-features = false`), so it is not in our tree.
+# It sits on the 0.16.19
+# floor, the lazy-writer-lease + automatic-refresh release. Where that landed
+# for us:
+#   * kglite-mcp-server (embedded unchanged via codingest-mcp's
+#     run_with_extensions): a write-enabled server now takes the served
+#     `.kgl`'s writer lease at its first unsaved change instead of at boot,
+#     so several clients can boot off one manifest; a `--graph` server
+#     stats the file per call and re-reads it when its identity moved, so a
+#     `codingest build` that replaces the artifact reaches the server on
+#     the next tool call with no `reload_graph`; `extensions.graph_watch` is
+#     retired (a boolean only logs a warning — codingest ships no manifest
+#     naming it); `save_graph` refuses to overwrite a file changed on disk;
+#     `reload_graph` gains `discard_unsaved`; `--lease-label` /
+#     `KGLITE_LEASE_LABEL` name the holder. Our workspace-graph hooks
+#     (`build` / `is_relevant`) are untouched — the `--watch` path compiles
+#     and behaves as before.
+#   * kglite core: additive only. `kglite::api::io::WriteOwnership` (+
+#     `BeginWrite`, `Discarded`, `WriteRefusal`), `GraphWriterLease::
+#     acquire_labeled`, and `kglite::api::make_dir_graph_mut_preserving_
+#     lineage` are new; `LeaseHolder` gains a `label` field (a struct-literal
+#     break codingest cannot hit — it never constructs one, never names
+#     `GraphWriterLease`). `save_graph` / `write_kgl` / `prepare_kgl_write`
+#     — every persistence entry we call — are byte-identical, and the goldens
+#     prove it. The one code change on our side ADOPTS the new accessor:
+#     codingest-cli's working-tree `set_instructions` is a configuration
+#     write, exactly the case the accessor was published for, and on a
+#     uniquely owned freshly built graph it is the same bytes as the
+#     `Arc::make_mut` it replaces.
+# It sits on the 0.16.18
+# floor, an MCP-server robustness release — every change lives in
 # kglite-mcp-server boot/extension handling, none in the engine:
 #   * `extensions.csv_http_server` with no `port:` (or `port: 0`) binds an
 #     OS-assigned port again (restores pre-rewrite behaviour; explicit
@@ -331,8 +388,8 @@ sha2 = "0.11"
 # and no disk storage. Neither 0.15.7 nor 0.15.8 changes the `kglite::api` we
 # call, graph output, property encoding, or `.kgl` serialization.
 # Keep both libraries aligned so the graph and server share one engine release.
-kglite = { version = "0.16.18", default-features = false }
-kglite-mcp-server = { version = "0.16.18", default-features = false }
+kglite = { version = "0.16.20", default-features = false }
+kglite-mcp-server = { version = "0.16.20", default-features = false }
 
 # Dependency debuginfo capped at line tables (kglite coordination, 2026-08-31,
 # after unbounded debug trees filled the build-cache disk to zero): a

{codingest-0.2.13 → codingest-0.2.15}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: codingest
-Version: 0.2.13
+Version: 0.2.15
 Classifier: Development Status :: 3 - Alpha
 Classifier: Intended Audience :: Developers
 Classifier: Programming Language :: Python :: 3
@@ -12,7 +12,7 @@ Classifier: Programming Language :: Python :: 3.14
 Classifier: Programming Language :: Rust
 Classifier: Topic :: Software Development
 Classifier: Topic :: Software Development :: Libraries
-Requires-Dist: kglite>=0.16.18,<0.17
+Requires-Dist: kglite>=0.16.20,<0.17
 License-File: LICENSE
 Summary: Build fast, queryable code graphs for AI agents, MCP code review, and local or GitHub repository analysis.
 Keywords: ai-agents,mcp,code-review,knowledge-graph,code-analysis,github,tree-sitter,cypher
@@ -192,7 +192,7 @@ codingest skill install        # code-review Agent Skill
 ```
 
 The wheel bundles every grammar plus the `codingest` and `codingest-mcp`
-commands. KGLite ≥0.16.18 is installed automatically as the query/storage
+commands. KGLite ≥0.16.20 is installed automatically as the query/storage
 engine; its MCP server and the transitive `mcp-methods` framework power the
 builder-aware Codingest server. Nothing else needs to be installed.
 
@@ -205,7 +205,7 @@ Python prerequisites.
 ```toml
 [dependencies]
 codingest = "0.2"
-kglite = "0.16.18"
+kglite = "0.16.20"
 ```
 
 ```rust
@@ -277,7 +277,7 @@ diagnostic.
 ## Dependency policy
 
 `kglite` and `kglite-mcp-server` use matching crates.io requirements with a
-0.16.18 minimum and a shared lockfile. This keeps the builder, persistence
+0.16.20 minimum and a shared lockfile. This keeps the builder, persistence
 handoff, and embedded MCP server on one compatible engine patch line.
 
 ## Parity with the (now-removed) in-tree component

{codingest-0.2.13 → codingest-0.2.15}/README.md

@@ -165,7 +165,7 @@ codingest skill install        # code-review Agent Skill
 ```
 
 The wheel bundles every grammar plus the `codingest` and `codingest-mcp`
-commands. KGLite ≥0.16.18 is installed automatically as the query/storage
+commands. KGLite ≥0.16.20 is installed automatically as the query/storage
 engine; its MCP server and the transitive `mcp-methods` framework power the
 builder-aware Codingest server. Nothing else needs to be installed.
 
@@ -178,7 +178,7 @@ Python prerequisites.
 ```toml
 [dependencies]
 codingest = "0.2"
-kglite = "0.16.18"
+kglite = "0.16.20"
 ```
 
 ```rust
@@ -250,7 +250,7 @@ diagnostic.
 ## Dependency policy
 
 `kglite` and `kglite-mcp-server` use matching crates.io requirements with a
-0.16.18 minimum and a shared lockfile. This keeps the builder, persistence
+0.16.20 minimum and a shared lockfile. This keeps the builder, persistence
 handoff, and embedded MCP server on one compatible engine patch line.
 
 ## Parity with the (now-removed) in-tree component

{codingest-0.2.13 → codingest-0.2.15}/crates/codingest/Cargo.toml

@@ -10,7 +10,7 @@ keywords = ["knowledge-graph", "code-analysis", "tree-sitter", "cypher", "kglite
 categories = ["development-tools", "parser-implementations"]
 
 # Requires the kglite 0.15 engine API (`kglite::api::code_entities`); the
-# workspace pins the current engine floor (0.16.18).
+# workspace pins the current engine floor (0.16.20).
 
 [lib]
 name = "codingest"

{codingest-0.2.13 → codingest-0.2.15}/crates/codingest-cli/Cargo.toml

@@ -14,7 +14,7 @@ name = "codingest"
 path = "src/main.rs"
 
 [dependencies]
-codingest = { version = "0.2.13", path = "../codingest" }
+codingest = { version = "0.2.15", path = "../codingest" }
 kglite = { workspace = true }
 anyhow = "1.0.104"
 clap = { version = "4.6.4", features = ["derive"] }

{codingest-0.2.13 → codingest-0.2.15}/crates/codingest-cli/src/code_tree_cli.rs

@@ -210,7 +210,13 @@ fn construct_graph(args: &BuildArgs, plan: &BuildPlan) -> Result<Arc<DirGraph>>
             "Code graph built from the current working tree at {}. Refresh the artifact after source changes and verify review findings against exact source lines.",
             plan.source.display()
         );
-        Arc::make_mut(&mut graph).set_instructions(&instructions, None);
+        // A configuration write, not a semantic mutation: kglite 0.16.19's
+        // lineage-preserving accessor is the published route for exactly this
+        // (it neither bumps the graph version nor forfeits disk writer
+        // authority on a shared snapshot). On the uniquely owned graph a fresh
+        // build hands us it is byte-for-byte the `Arc::make_mut` it replaces.
+        kglite::api::make_dir_graph_mut_preserving_lineage(&mut graph)
+            .set_instructions(&instructions, None);
     }
     Ok(graph)
 }

{codingest-0.2.13 → codingest-0.2.15}/crates/codingest-mcp/Cargo.toml

@@ -14,6 +14,6 @@ name = "codingest-mcp"
 path = "src/main.rs"
 
 [dependencies]
-codingest = { version = "0.2.13", path = "../codingest" }
+codingest = { version = "0.2.15", path = "../codingest" }
 kglite-mcp-server = { workspace = true }
 anyhow = "1.0.104"

{codingest-0.2.13 → codingest-0.2.15}/crates/codingest-py/Cargo.toml

@@ -42,7 +42,7 @@ doctest = false
 pyo3 = { version = "0.29" }
 # The engine-free builder (parsers, call/type/route edges, rev merge, repo
 # clone, manifest reader). Docs pass gated by this crate's `docs` feature.
-codingest = { version = "0.2.13", path = "../codingest", default-features = false }
+codingest = { version = "0.2.15", path = "../codingest", default-features = false }
 # `.kgl` persistence (`kglite::api::io::save_graph`) for the serialize half of
 # the build-then-load handoff, plus the `DirGraph` type the builder returns.
 kglite = { workspace = true }
@@ -53,9 +53,9 @@ tempfile = "3.27.0"
 # through `_run_cli`, so `pip install codingest` also installs the `codingest`
 # command without a second wheel or a duplicated builder build. Mirrors
 # kglite-py's `kglite-cli` bundling.
-codingest-cli = { version = "0.2.13", path = "../codingest-cli" }
+codingest-cli = { version = "0.2.15", path = "../codingest-cli" }
 # Source-building MCP composition. The graph server and generic MCP lifecycle
 # remain owned by its existing kglite-mcp-server -> mcp-methods Rust dependency
 # chain; linking this thin library into the extension gives pip users the same
 # builder-aware server as the standalone `codingest-mcp` binary.
-codingest-mcp = { version = "0.2.13", path = "../codingest-mcp" }
+codingest-mcp = { version = "0.2.15", path = "../codingest-mcp" }

{codingest-0.2.13 → codingest-0.2.15}/crates/codingest-py/src/lib.rs

@@ -74,7 +74,7 @@ fn load_via_kglite(py: Python<'_>, path: &Path) -> PyResult<Py<PyAny>> {
         PyRuntimeError::new_err(format!(
             "codingest.build() returns a kglite.KnowledgeGraph, but importing \
              `kglite` failed ({e}). Install it: `pip install \
-             'kglite>=0.16.18,<0.17'`."
+             'kglite>=0.16.20,<0.17'`."
         ))
     })?;
     let graph = kglite.call_method1("load", (path.to_string_lossy().as_ref(),))?;

{codingest-0.2.13 → codingest-0.2.15}/pyproject.toml

@@ -42,9 +42,9 @@ dynamic = ["version"]
 # minor releases (e.g. the v3->v4 break, which refuses old files outright), so
 # pip must never be free to pair our writer with a reader from a different
 # minor. This range therefore mirrors the Cargo semver range for the pin above
-# (`version = "0.16.18"` == `>=0.16.18,<0.17.0`) exactly — bump both together.
+# (`version = "0.16.20"` == `>=0.16.20,<0.17.0`) exactly — bump both together.
 dependencies = [
-    "kglite>=0.16.18,<0.17",
+    "kglite>=0.16.20,<0.17",
 ]
 
 [project.urls]