codeocean-mcp-server 0.9.0__tar.gz → 0.12.0__tar.gz

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Files changed (30) hide show
  1. {codeocean_mcp_server-0.9.0 → codeocean_mcp_server-0.12.0}/CHANGELOG.md +16 -0
  2. {codeocean_mcp_server-0.9.0 → codeocean_mcp_server-0.12.0}/PKG-INFO +17 -3
  3. {codeocean_mcp_server-0.9.0 → codeocean_mcp_server-0.12.0}/README.md +14 -0
  4. {codeocean_mcp_server-0.9.0 → codeocean_mcp_server-0.12.0}/pyproject.toml +2 -2
  5. codeocean_mcp_server-0.12.0/src/codeocean_mcp_server/client.py +54 -0
  6. codeocean_mcp_server-0.12.0/src/codeocean_mcp_server/server.py +70 -0
  7. {codeocean_mcp_server-0.9.0 → codeocean_mcp_server-0.12.0}/src/codeocean_mcp_server/tools/capsules.py +24 -17
  8. {codeocean_mcp_server-0.9.0 → codeocean_mcp_server-0.12.0}/src/codeocean_mcp_server/tools/computations.py +6 -1
  9. codeocean_mcp_server-0.12.0/tests/test_http_transport.py +140 -0
  10. {codeocean_mcp_server-0.9.0 → codeocean_mcp_server-0.12.0}/tests/test_tool_calling.py +10 -0
  11. {codeocean_mcp_server-0.9.0 → codeocean_mcp_server-0.12.0}/uv.lock +67 -5
  12. codeocean_mcp_server-0.9.0/src/codeocean_mcp_server/server.py +0 -41
  13. {codeocean_mcp_server-0.9.0 → codeocean_mcp_server-0.12.0}/.gitignore +0 -0
  14. {codeocean_mcp_server-0.9.0 → codeocean_mcp_server-0.12.0}/.python-version +0 -0
  15. {codeocean_mcp_server-0.9.0 → codeocean_mcp_server-0.12.0}/LICENSE +0 -0
  16. {codeocean_mcp_server-0.9.0 → codeocean_mcp_server-0.12.0}/RELEASE.md +0 -0
  17. {codeocean_mcp_server-0.9.0 → codeocean_mcp_server-0.12.0}/src/codeocean_mcp_server/__init__.py +0 -0
  18. {codeocean_mcp_server-0.9.0 → codeocean_mcp_server-0.12.0}/src/codeocean_mcp_server/file_utils.py +0 -0
  19. {codeocean_mcp_server-0.9.0 → codeocean_mcp_server-0.12.0}/src/codeocean_mcp_server/logging_config.py +0 -0
  20. {codeocean_mcp_server-0.9.0 → codeocean_mcp_server-0.12.0}/src/codeocean_mcp_server/models.py +0 -0
  21. {codeocean_mcp_server-0.9.0 → codeocean_mcp_server-0.12.0}/src/codeocean_mcp_server/search.py +0 -0
  22. {codeocean_mcp_server-0.9.0 → codeocean_mcp_server-0.12.0}/src/codeocean_mcp_server/tools/__init__.py +0 -0
  23. {codeocean_mcp_server-0.9.0 → codeocean_mcp_server-0.12.0}/src/codeocean_mcp_server/tools/custom_metadata.py +0 -0
  24. {codeocean_mcp_server-0.9.0 → codeocean_mcp_server-0.12.0}/src/codeocean_mcp_server/tools/data_assets.py +0 -0
  25. {codeocean_mcp_server-0.9.0 → codeocean_mcp_server-0.12.0}/tests/bedrock_call.py +0 -0
  26. {codeocean_mcp_server-0.9.0 → codeocean_mcp_server-0.12.0}/tests/bedrock_tools_converter.py +0 -0
  27. {codeocean_mcp_server-0.9.0 → codeocean_mcp_server-0.12.0}/tests/conftest.py +0 -0
  28. {codeocean_mcp_server-0.9.0 → codeocean_mcp_server-0.12.0}/tests/mcp_client.py +0 -0
  29. {codeocean_mcp_server-0.9.0 → codeocean_mcp_server-0.12.0}/tests/test_multi_tool_calling.py +0 -0
  30. {codeocean_mcp_server-0.9.0 → codeocean_mcp_server-0.12.0}/tests/test_search.py +0 -0
@@ -1,6 +1,22 @@
1
1
  CHANGELOG
2
2
  =========
3
3
 
4
+ ## 0.12.0 (2026-08-27)
5
+
6
+ - [#38](https://github.com/codeocean/codeocean-mcp-server/pull/38) feat: serve over streamable HTTP with per-request credentials
7
+
8
+ ## 0.11.0 (2026-03-09)
9
+
10
+ - [#35](https://github.com/codeocean/codeocean-mcp-server/pull/35) feat: add `delete_computation` tool to stop and delete computations
11
+
12
+ ## 0.10.0 (2026-02-24)
13
+
14
+ - [#33](https://github.com/codeocean/codeocean-mcp-server/pull/33) feat: upgrade mcp package
15
+
16
+ ## 0.9.1 (2026-02-04)
17
+
18
+ - [#31](https://github.com/codeocean/codeocean-mcp-server/pull/31) feat: clarify data asset attach tool usage
19
+
4
20
  ## 0.9.0 (2026-01-30)
5
21
 
6
22
  - [#29](https://github.com/codeocean/codeocean-mcp-server/pull/29) feat: upgrade codeocean SDK to v0.14.0
@@ -1,6 +1,6 @@
1
- Metadata-Version: 2.4
1
+ Metadata-Version: 2.5
2
2
  Name: codeocean-mcp-server
3
- Version: 0.9.0
3
+ Version: 0.12.0
4
4
  Summary: Code Ocean MCP Server
5
5
  Project-URL: Homepage, https://github.com/codeocean/codeocean-mcp-server
6
6
  Project-URL: Issues, https://github.com/codeocean/codeocean-mcp-server/issues
@@ -13,7 +13,7 @@ Classifier: Operating System :: OS Independent
13
13
  Classifier: Programming Language :: Python :: 3
14
14
  Requires-Python: >=3.10
15
15
  Requires-Dist: codeocean<0.15.0,>=0.14.0
16
- Requires-Dist: mcp<1.13.0,>=1.12.0
16
+ Requires-Dist: mcp<1.24.0,>=1.23.0
17
17
  Description-Content-Type: text/markdown
18
18
 
19
19
  # Code Ocean MCP Server
@@ -33,6 +33,7 @@ This MCP server provides tools to search and run capsules and pipelines, and man
33
33
  - [Roo Code](#roo-code)
34
34
  - [Cursor](#cursor)
35
35
  - [Windsurf](#windsurf)
36
+ - [Streamable HTTP Transport](#streamable-http-transport)
36
37
  - [Local Testing](#local-testing)
37
38
 
38
39
  ## Prerequisites
@@ -215,6 +216,19 @@ Windsurf (Cascade) uses mcp_config.json under ~/.codeium/windsurf/ (or via the C
215
216
 
216
217
  3. Save and restart Windsurf (or hit “Refresh” in the MCP panel).
217
218
 
219
+ ## Streamable HTTP Transport
220
+
221
+ By default the server runs over stdio and authenticates with the `CODEOCEAN_TOKEN` environment variable, as
222
+ described above. It can also serve multiple users from a single process over streamable HTTP, taking each
223
+ caller's API token from the request instead:
224
+
225
+ ```bash
226
+ CODEOCEAN_DOMAIN=https://acmecorp.codeocean.com codeocean-mcp-server --transport streamable-http --host 127.0.0.1 --port 8000
227
+ ```
228
+
229
+ Clients then pass their own token as `Authorization: Bearer <YOUR_API_KEY>` on every request; `CODEOCEAN_TOKEN`
230
+ is not used, and a request without a token is refused. The endpoint is `http://<host>:<port>/mcp`.
231
+
218
232
  ## Local Testing
219
233
 
220
234
  You can test the MCP server locally during development with [MCP Inspector](https://modelcontextprotocol.io/legacy/tools/inspector):
@@ -15,6 +15,7 @@ This MCP server provides tools to search and run capsules and pipelines, and man
15
15
  - [Roo Code](#roo-code)
16
16
  - [Cursor](#cursor)
17
17
  - [Windsurf](#windsurf)
18
+ - [Streamable HTTP Transport](#streamable-http-transport)
18
19
  - [Local Testing](#local-testing)
19
20
 
20
21
  ## Prerequisites
@@ -197,6 +198,19 @@ Windsurf (Cascade) uses mcp_config.json under ~/.codeium/windsurf/ (or via the C
197
198
 
198
199
  3. Save and restart Windsurf (or hit “Refresh” in the MCP panel).
199
200
 
201
+ ## Streamable HTTP Transport
202
+
203
+ By default the server runs over stdio and authenticates with the `CODEOCEAN_TOKEN` environment variable, as
204
+ described above. It can also serve multiple users from a single process over streamable HTTP, taking each
205
+ caller's API token from the request instead:
206
+
207
+ ```bash
208
+ CODEOCEAN_DOMAIN=https://acmecorp.codeocean.com codeocean-mcp-server --transport streamable-http --host 127.0.0.1 --port 8000
209
+ ```
210
+
211
+ Clients then pass their own token as `Authorization: Bearer <YOUR_API_KEY>` on every request; `CODEOCEAN_TOKEN`
212
+ is not used, and a request without a token is refused. The endpoint is `http://<host>:<port>/mcp`.
213
+
200
214
  ## Local Testing
201
215
 
202
216
  You can test the MCP server locally during development with [MCP Inspector](https://modelcontextprotocol.io/legacy/tools/inspector):
@@ -1,6 +1,6 @@
1
1
  [project]
2
2
  name = "codeocean-mcp-server"
3
- version = "0.9.0"
3
+ version = "0.12.0"
4
4
  authors = [{ name = "Code Ocean", email = "dev@codeocean.com" }]
5
5
  description = "Code Ocean MCP Server"
6
6
  readme = "README.md"
@@ -12,7 +12,7 @@ classifiers = [
12
12
  ]
13
13
  dependencies = [
14
14
  "codeocean>=0.14.0,<0.15.0",
15
- "mcp>=1.12.0,<1.13.0",
15
+ "mcp>=1.23.0,<1.24.0",
16
16
  ]
17
17
  license = "MIT"
18
18
 
@@ -0,0 +1,54 @@
1
+ """Per-request Code Ocean client resolution for the streamable-HTTP transport."""
2
+
3
+ from functools import lru_cache
4
+
5
+ from codeocean import CodeOcean
6
+ from mcp.server.fastmcp import FastMCP
7
+ from starlette.requests import Request
8
+
9
+
10
+ @lru_cache(maxsize=32)
11
+ def _cached_client(domain: str, token: str, agent_id: str | None) -> CodeOcean:
12
+ """Return a client for the given credentials, reusing its HTTP connection pool across requests."""
13
+ return CodeOcean(domain=domain, token=token, agent_id=agent_id)
14
+
15
+
16
+ def _bearer_token(request: Request) -> str | None:
17
+ """Return the token from an 'Authorization: Bearer <token>' header, or None for any other scheme."""
18
+ scheme, _, token = request.headers.get("authorization", "").partition(" ")
19
+ if scheme.lower() != "bearer":
20
+ return None
21
+ return token.strip() or None
22
+
23
+
24
+ class RequestScopedClient:
25
+ """A `CodeOcean` stand-in that resolves to the calling request's own client on every attribute access.
26
+
27
+ Tools reach the SDK as `client.<sub_client>.<method>(...)`, evaluated when the tool runs, so wrapping
28
+ the client is enough to give each request its own credentials without touching the tools themselves.
29
+
30
+ Outside a request — tool registration, where descriptions are read from SDK docstrings — attribute
31
+ access resolves to a client built from the environment's token, which issues no network call.
32
+ """
33
+
34
+ def __init__(self, mcp: FastMCP, domain: str, token: str | None, agent_id: str | None):
35
+ """Wrap the credentials that are fixed for the process, around the token that varies per request."""
36
+ self._mcp = mcp
37
+ self._domain = domain
38
+ self._token = token
39
+ self._agent_id = agent_id
40
+
41
+ def __getattr__(self, name: str):
42
+ """Delegate to the calling request's client."""
43
+ return getattr(self._resolve(), name)
44
+
45
+ def _resolve(self) -> CodeOcean:
46
+ try:
47
+ request = self._mcp.get_context().request_context.request
48
+ except ValueError:
49
+ # Registration happens outside any request, so it needs no credential of its own.
50
+ return _cached_client(self._domain, self._token or "", self._agent_id)
51
+ token = _bearer_token(request) if request is not None else None
52
+ if not token:
53
+ raise ValueError("Missing Code Ocean API token: send it as an 'Authorization: Bearer <token>' header.")
54
+ return _cached_client(self._domain, token, self._agent_id)
@@ -0,0 +1,70 @@
1
+ import argparse
2
+ import os
3
+
4
+ from codeocean import CodeOcean
5
+ from mcp.server.fastmcp import FastMCP
6
+
7
+ from codeocean_mcp_server.client import RequestScopedClient
8
+ from codeocean_mcp_server.logging_config import configure_logging
9
+ from codeocean_mcp_server.tools import (
10
+ capsules,
11
+ computations,
12
+ custom_metadata,
13
+ data_assets,
14
+ )
15
+
16
+
17
+ def parse_args(argv: list[str] | None = None) -> argparse.Namespace:
18
+ """Parse command line arguments."""
19
+ parser = argparse.ArgumentParser(prog="codeocean-mcp-server", description="Code Ocean MCP Server")
20
+ parser.add_argument(
21
+ "--transport",
22
+ choices=["stdio", "streamable-http"],
23
+ default="stdio",
24
+ help="Transport to serve on. Over streamable-HTTP the API token is taken per request from the "
25
+ "'Authorization: Bearer <token>' header instead of from CODEOCEAN_TOKEN.",
26
+ )
27
+ parser.add_argument("--host", default="127.0.0.1", help="Host to bind to when serving over streamable-HTTP.")
28
+ parser.add_argument("--port", type=int, default=8000, help="Port to bind to when serving over streamable-HTTP.")
29
+ return parser.parse_args(argv)
30
+
31
+
32
+ def main():
33
+ """Run the MCP server."""
34
+ configure_logging()
35
+ args = parse_args()
36
+ stdio = args.transport == "stdio"
37
+ domain = os.getenv("CODEOCEAN_DOMAIN")
38
+ token = os.getenv("CODEOCEAN_TOKEN")
39
+ if not domain:
40
+ raise ValueError("Environment variable CODEOCEAN_DOMAIN must be set.")
41
+ agent_id = os.getenv("AGENT_ID", "AI Agent")
42
+
43
+ mcp = FastMCP(
44
+ name="Code Ocean",
45
+ instructions=(
46
+ f"MCP server for Code Ocean: search & run capsules, pipelines, and assets using Code Ocean domain {domain}."
47
+ ),
48
+ host=args.host,
49
+ port=args.port,
50
+ stateless_http=True,
51
+ )
52
+
53
+ if stdio:
54
+ # Over stdio the process serves a single user, so the environment's client is used directly, as before.
55
+ if not token:
56
+ raise ValueError("Environment variable CODEOCEAN_TOKEN must be set when serving over stdio.")
57
+ client = CodeOcean(domain=domain, token=token, agent_id=agent_id)
58
+ else:
59
+ client = RequestScopedClient(mcp, domain, token, agent_id)
60
+
61
+ capsules.add_tools(mcp, client)
62
+ data_assets.add_tools(mcp, client)
63
+ computations.add_tools(mcp, client)
64
+ custom_metadata.add_tools(mcp, client)
65
+
66
+ mcp.run(transport=args.transport)
67
+
68
+
69
+ if __name__ == "__main__":
70
+ main()
@@ -40,11 +40,27 @@ def add_tools(mcp: FastMCP, client: CodeOcean):
40
40
  results = client.pipelines.search_pipelines(params)
41
41
  return CapsuleSearchResults.from_sdk_results(results, include_field_names)
42
42
 
43
+ @mcp.tool(
44
+ description=(
45
+ str(client.capsules.get_capsule.__doc__) + "Use only to fetch metadata for a known capsule ID. "
46
+ "Do not use for searching."
47
+ )
48
+ )
49
+ def get_capsule(capsule_id: str) -> Capsule:
50
+ """Retrieve a capsule by its ID."""
51
+ return client.capsules.get_capsule(capsule_id)
52
+
53
+ @mcp.tool(description=client.capsules.list_computations.__doc__)
54
+ def list_computations(capsule_id: str) -> list[Computation]:
55
+ """List all computations for a capsule."""
56
+ return client.capsules.list_computations(capsule_id)
57
+
43
58
  @mcp.tool(
44
59
  description=(
45
60
  str(client.capsules.attach_data_assets.__doc__)
46
- + "Accepts a list of parameter objects (e.g. [{'id': '...'}]), "
47
- "not just a list of IDs."
61
+ + " Use when the capsule has no running cloud workstations. For active cloud workstation sessions"
62
+ " use attach_computation_data_assets instead."
63
+ " Accepts a list of parameter objects (e.g. [{'id': '...'}]), not just a list of IDs."
48
64
  )
49
65
  )
50
66
  def attach_data_assets(
@@ -57,25 +73,16 @@ def add_tools(mcp: FastMCP, client: CodeOcean):
57
73
 
58
74
  @mcp.tool(
59
75
  description=(
60
- str(client.capsules.get_capsule.__doc__) + "Use only to fetch metadata for a known capsule ID. "
61
- "Do not use for searching."
76
+ str(client.capsules.detach_data_assets.__doc__)
77
+ + " Use when the capsule has no running cloud workstations. For active cloud workstation sessions"
78
+ " use detach_computation_data_assets instead."
62
79
  )
63
80
  )
64
- def get_capsule(capsule_id: str) -> Capsule:
65
- """Retrieve a capsule by its ID."""
66
- return client.capsules.get_capsule(capsule_id)
67
-
68
- @mcp.tool(description=client.capsules.list_computations.__doc__)
69
- def list_computations(capsule_id: str) -> list[Computation]:
70
- """List all computations for a capsule."""
71
- return client.capsules.list_computations(capsule_id)
81
+ def detach_data_assets(capsule_id: str, data_assets: list[str]) -> None:
82
+ """Remove attached data assets from a capsule."""
83
+ client.capsules.detach_data_assets(capsule_id, data_assets)
72
84
 
73
85
  @mcp.tool(description=client.capsules.get_capsule_app_panel.__doc__)
74
86
  def get_capsule_app_panel(capsule_id: str, version: int | None = None) -> AppPanelModel:
75
87
  """Retrieve the app panel for a capsule, optionally for a specific version."""
76
88
  return client.capsules.get_capsule_app_panel(capsule_id, version)
77
-
78
- @mcp.tool(description=client.capsules.detach_data_assets.__doc__)
79
- def detach_data_assets(capsule_id: str, data_assets: list[str]) -> None:
80
- """Remove attached data assets from a capsule."""
81
- client.capsules.detach_data_assets(capsule_id, data_assets)
@@ -15,7 +15,7 @@ RunParamsModel = dataclass_to_pydantic(RunParams)
15
15
  DataAssetAttachParamsModel = dataclass_to_pydantic(DataAssetAttachParams)
16
16
 
17
17
 
18
- def add_tools(mcp: FastMCP, client: CodeOcean):
18
+ def add_tools(mcp: FastMCP, client: CodeOcean): # noqa: C901
19
19
  """Add capsule tools to the MCP server."""
20
20
 
21
21
  @mcp.tool(description=client.computations.get_computation.__doc__)
@@ -67,6 +67,11 @@ def add_tools(mcp: FastMCP, client: CodeOcean):
67
67
  """Rename an existing computation."""
68
68
  client.computations.rename_computation(computation_id, name)
69
69
 
70
+ @mcp.tool(description=client.computations.delete_computation.__doc__)
71
+ def delete_computation(computation_id: str) -> None:
72
+ """Delete a computation and stop it if currently running."""
73
+ client.computations.delete_computation(computation_id)
74
+
70
75
  @mcp.tool(
71
76
  description=(
72
77
  str(client.computations.attach_data_assets.__doc__)
@@ -0,0 +1,140 @@
1
+ """End-to-end tests for the streamable-HTTP transport and its per-request credentials.
2
+
3
+ A stub Code Ocean API echoes back the token it was called with, so each assertion follows a token
4
+ from the MCP request header all the way to the outgoing API call.
5
+ """
6
+
7
+ import asyncio
8
+ import base64
9
+ import json
10
+ import os
11
+ import socket
12
+ import subprocess
13
+ import sys
14
+ import threading
15
+ import time
16
+ from http.server import BaseHTTPRequestHandler, ThreadingHTTPServer
17
+ from pathlib import Path
18
+
19
+ import pytest
20
+ from mcp import ClientSession, StdioServerParameters
21
+ from mcp.client.streamable_http import streamablehttp_client
22
+ from mcp_client import get_tools
23
+
24
+ SERVER_SCRIPT_PATH = str(Path(__file__).parent.parent / "src" / "codeocean_mcp_server" / "server.py")
25
+
26
+
27
+ class _EchoTokenHandler(BaseHTTPRequestHandler):
28
+ """Answer the custom metadata endpoint with the basic-auth user, which is the API token."""
29
+
30
+ def do_GET(self): # noqa: D102, N802
31
+ user = base64.b64decode(self.headers["Authorization"].split(" ")[1]).decode().split(":")[0]
32
+ body = json.dumps({"categories": [user]}).encode()
33
+ self.send_response(200)
34
+ self.send_header("Content-Type", "application/json")
35
+ self.send_header("Content-Length", str(len(body)))
36
+ self.end_headers()
37
+ self.wfile.write(body)
38
+
39
+ def log_message(self, *args): # noqa: D102
40
+ pass
41
+
42
+
43
+ def _free_port() -> int:
44
+ with socket.socket() as sock:
45
+ sock.bind(("127.0.0.1", 0))
46
+ return sock.getsockname()[1]
47
+
48
+
49
+ def _wait_until_listening(port: int, timeout: float = 30.0):
50
+ deadline = time.monotonic() + timeout
51
+ while time.monotonic() < deadline:
52
+ with socket.socket() as sock:
53
+ if sock.connect_ex(("127.0.0.1", port)) == 0:
54
+ return
55
+ time.sleep(0.1)
56
+ raise TimeoutError(f"MCP server did not start listening on port {port}")
57
+
58
+
59
+ @pytest.fixture(scope="module")
60
+ def http_server():
61
+ """Serve the MCP server over streamable-HTTP against a stub Code Ocean API, and yield URL and domain."""
62
+ api = ThreadingHTTPServer(("127.0.0.1", 0), _EchoTokenHandler)
63
+ threading.Thread(target=api.serve_forever, daemon=True).start()
64
+
65
+ port = _free_port()
66
+ env = {**os.environ, "CODEOCEAN_DOMAIN": f"http://127.0.0.1:{api.server_address[1]}"}
67
+ env.pop("CODEOCEAN_TOKEN", None)
68
+ process = subprocess.Popen(
69
+ [sys.executable, SERVER_SCRIPT_PATH, "--transport", "streamable-http", "--port", str(port)],
70
+ env=env,
71
+ )
72
+ try:
73
+ _wait_until_listening(port)
74
+ yield f"http://127.0.0.1:{port}/mcp", env["CODEOCEAN_DOMAIN"]
75
+ finally:
76
+ process.terminate()
77
+ process.wait(timeout=30)
78
+ api.shutdown()
79
+
80
+
81
+ def _stdio_server(domain: str) -> StdioServerParameters:
82
+ """Describe the same server run over stdio, against the same Code Ocean domain."""
83
+ return StdioServerParameters(
84
+ command=sys.executable,
85
+ args=[SERVER_SCRIPT_PATH],
86
+ env={"CODEOCEAN_DOMAIN": domain, "CODEOCEAN_TOKEN": "token"},
87
+ )
88
+
89
+
90
+ async def _call_get_custom_metadata(url: str, token: str | None, scheme: str = "Bearer"):
91
+ headers = {"Authorization": f"{scheme} {token}"} if token else None
92
+ async with streamablehttp_client(url, headers=headers) as (read_stream, write_stream, _):
93
+ async with ClientSession(read_stream, write_stream) as session:
94
+ await session.initialize()
95
+ return await session.call_tool("get_custom_metadata", {})
96
+
97
+
98
+ def test_concurrent_requests_use_their_own_token(http_server):
99
+ """Each request acts with the token from its own authorization header."""
100
+ url, _ = http_server
101
+
102
+ async def both():
103
+ return await asyncio.gather(
104
+ _call_get_custom_metadata(url, "alice-token"),
105
+ _call_get_custom_metadata(url, "bob-token"),
106
+ )
107
+
108
+ alice, bob = asyncio.run(both())
109
+ assert alice.structuredContent["categories"] == ["alice-token"]
110
+ assert bob.structuredContent["categories"] == ["bob-token"]
111
+
112
+
113
+ def test_request_without_credential_is_refused(http_server):
114
+ """A request carrying no token is refused rather than served with the environment's client."""
115
+ url, _ = http_server
116
+ result = asyncio.run(_call_get_custom_metadata(url, None))
117
+ assert result.isError
118
+ assert "Missing Code Ocean API token" in result.content[0].text
119
+
120
+
121
+ def test_non_bearer_credential_is_refused(http_server):
122
+ """A token offered under any scheme other than Bearer is refused rather than used."""
123
+ url, _ = http_server
124
+ result = asyncio.run(_call_get_custom_metadata(url, "alice-token", scheme="Basic"))
125
+ assert result.isError
126
+ assert "Missing Code Ocean API token" in result.content[0].text
127
+
128
+
129
+ def test_tool_definitions_match_stdio(http_server):
130
+ """Serving over HTTP leaves tool names, schemas and descriptions exactly as stdio serves them."""
131
+ url, domain = http_server
132
+
133
+ async def list_over_http():
134
+ async with streamablehttp_client(url) as (read_stream, write_stream, _):
135
+ async with ClientSession(read_stream, write_stream) as session:
136
+ await session.initialize()
137
+ return (await session.list_tools()).tools
138
+
139
+ over_stdio = get_tools(_stdio_server(domain))
140
+ assert [t.model_dump() for t in asyncio.run(list_over_http())] == [t.model_dump() for t in over_stdio]
@@ -475,6 +475,16 @@ test_response = [
475
475
  },
476
476
  },
477
477
  # --------------------------------------------------------------
478
+ # delete_computation
479
+ {
480
+ "id": "delete_computation",
481
+ "prompt": "delete computation with id: comp123",
482
+ "expected": {
483
+ "name": "delete_computation",
484
+ "input": {"computation_id": "comp123"},
485
+ },
486
+ },
487
+ # --------------------------------------------------------------
478
488
  # attach_computation_data_assets
479
489
  {
480
490
  "id": "attach_computation_data_assets",
@@ -367,6 +367,8 @@ dependencies = [
367
367
  ]
368
368
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369
369
  wheels = [
370
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377
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414
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530
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560
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579
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652
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663
  { url = "https://files.pythonhosted.org/packages/99/55/181022996c4063fc0e7666a47049a1ca705abb9c8a13830f074edb347495/cryptography-46.0.3-pp311-pypy311_pp73-manylinux_2_34_aarch64.whl", hash = "sha256:9394673a9f4de09e28b5356e7fff97d778f8abad85c9d5ac4a4b7e25a0de7717", size = 4242957, upload-time = "2025-10-15T23:18:22.18Z" },
620
664
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621
666
  ]
622
667
 
623
668
  [[package]]
@@ -1600,7 +1645,7 @@ wheels = [
1600
1645
 
1601
1646
  [[package]]
1602
1647
  name = "mcp"
1603
- version = "1.12.4"
1648
+ version = "1.23.3"
1604
1649
  source = { registry = "https://pypi.org/simple" }
1605
1650
  dependencies = [
1606
1651
  { name = "anyio" },
@@ -1609,15 +1654,18 @@ dependencies = [
1609
1654
  { name = "jsonschema" },
1610
1655
  { name = "pydantic" },
1611
1656
  { name = "pydantic-settings" },
1657
+ { name = "pyjwt", extra = ["crypto"] },
1612
1658
  { name = "python-multipart" },
1613
1659
  { name = "pywin32", marker = "sys_platform == 'win32'" },
1614
1660
  { name = "sse-starlette" },
1615
1661
  { name = "starlette" },
1662
+ { name = "typing-extensions" },
1663
+ { name = "typing-inspection" },
1616
1664
  { name = "uvicorn", marker = "sys_platform != 'emscripten'" },
1617
1665
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1618
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+ sdist = { url = "https://files.pythonhosted.org/packages/a7/a4/d06a303f45997e266f2c228081abe299bbcba216cb806128e2e49095d25f/mcp-1.23.3.tar.gz", hash = "sha256:b3b0da2cc949950ce1259c7bfc1b081905a51916fcd7c8182125b85e70825201", size = 600697, upload-time = "2025-12-09T16:04:37.351Z" }
1619
1667
  wheels = [
1620
- { url = "https://files.pythonhosted.org/packages/ad/68/316cbc54b7163fa22571dcf42c9cc46562aae0a021b974e0a8141e897200/mcp-1.12.4-py3-none-any.whl", hash = "sha256:7aa884648969fab8e78b89399d59a683202972e12e6bc9a1c88ce7eda7743789", size = 160145, upload-time = "2025-08-07T20:31:15.69Z" },
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+ { url = "https://files.pythonhosted.org/packages/32/c6/13c1a26b47b3f3a3b480783001ada4268917c9f42d78a079c336da2e75e5/mcp-1.23.3-py3-none-any.whl", hash = "sha256:32768af4b46a1b4f7df34e2bfdf5c6011e7b63d7f1b0e321d0fdef4cd6082031", size = 231570, upload-time = "2025-12-09T16:04:35.56Z" },
1621
1669
  ]
1622
1670
 
1623
1671
  [[package]]
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2215
2263
  { url = "https://files.pythonhosted.org/packages/c7/21/705964c7812476f378728bdf590ca4b771ec72385c533964653c68e86bdc/pygments-2.19.2-py3-none-any.whl", hash = "sha256:86540386c03d588bb81d44bc3928634ff26449851e99741617ecb9037ee5ec0b", size = 1225217, upload-time = "2025-06-21T13:39:07.939Z" },
2216
2264
  ]
2217
2265
 
2266
+ [[package]]
2267
+ name = "pyjwt"
2268
+ version = "2.11.0"
2269
+ source = { registry = "https://pypi.org/simple" }
2270
+ sdist = { url = "https://files.pythonhosted.org/packages/5c/5a/b46fa56bf322901eee5b0454a34343cdbdae202cd421775a8ee4e42fd519/pyjwt-2.11.0.tar.gz", hash = "sha256:35f95c1f0fbe5d5ba6e43f00271c275f7a1a4db1dab27bf708073b75318ea623", size = 98019, upload-time = "2026-01-30T19:59:55.694Z" }
2271
+ wheels = [
2272
+ { url = "https://files.pythonhosted.org/packages/6f/01/c26ce75ba460d5cd503da9e13b21a33804d38c2165dec7b716d06b13010c/pyjwt-2.11.0-py3-none-any.whl", hash = "sha256:94a6bde30eb5c8e04fee991062b534071fd1439ef58d2adc9ccb823e7bcd0469", size = 28224, upload-time = "2026-01-30T19:59:54.539Z" },
2273
+ ]
2274
+
2275
+ [package.optional-dependencies]
2276
+ crypto = [
2277
+ { name = "cryptography" },
2278
+ ]
2279
+
2218
2280
  [[package]]
2219
2281
  name = "pyproject-hooks"
2220
2282
  version = "1.2.0"
@@ -1,41 +0,0 @@
1
- import os
2
-
3
- from codeocean import CodeOcean
4
- from mcp.server.fastmcp import FastMCP
5
-
6
- from codeocean_mcp_server.logging_config import configure_logging
7
- from codeocean_mcp_server.tools import (
8
- capsules,
9
- computations,
10
- custom_metadata,
11
- data_assets,
12
- )
13
-
14
-
15
- def main():
16
- """Run the MCP server."""
17
- configure_logging()
18
- domain = os.getenv("CODEOCEAN_DOMAIN")
19
- token = os.getenv("CODEOCEAN_TOKEN")
20
- if not domain or not token:
21
- raise ValueError("Environment variables CODEOCEAN_DOMAIN and CODEOCEAN_TOKEN must be set.")
22
- agent_id = os.getenv("AGENT_ID", "AI Agent")
23
- client = CodeOcean(domain=domain, token=token, agent_id=agent_id)
24
-
25
- mcp = FastMCP(
26
- name="Code Ocean",
27
- instructions=(
28
- f"MCP server for Code Ocean: search & run capsules, pipelines, and assets using Code Ocean domain {domain}."
29
- ),
30
- )
31
-
32
- capsules.add_tools(mcp, client)
33
- data_assets.add_tools(mcp, client)
34
- computations.add_tools(mcp, client)
35
- custom_metadata.add_tools(mcp, client)
36
-
37
- mcp.run()
38
-
39
-
40
- if __name__ == "__main__":
41
- main()