codeocean-mcp-server 0.3.0__tar.gz → 0.5.0__tar.gz

{codeocean_mcp_server-0.3.0 → codeocean_mcp_server-0.5.0}/CHANGELOG.md

@@ -1,6 +1,15 @@
 CHANGELOG
 =========
 
+## 0.5.0 (2025-09-01)
+
+- [#9](https://github.com/codeocean/codeocean-mcp-server/pull/9) feat: Updates for Code Ocean v3.9
+- **Minimum Code Ocean platform version updated to `3.9.0`.** 
+
+## 0.4.0 (2025-08-04)
+
+- [#7](https://github.com/codeocean/codeocean-mcp-server/pull/7) fix: pin mcp package dependency
+
 ## 0.3.0 (2025-07-14)
 
 - [#5](https://github.com/codeocean/codeocean-mcp-server/pull/5) feat: Add support for AI agent ID in server configuration
@@ -13,3 +22,4 @@ CHANGELOG
 ## 0.1.0 (2025-07-01)
 
 - [#1](https://github.com/codeocean/codeocean-mcp-server/pull/1) Initial version
+- **Minimum Code Ocean platform version updated to `3.6.0`.** 

{codeocean_mcp_server-0.3.0 → codeocean_mcp_server-0.5.0}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: codeocean-mcp-server
-Version: 0.3.0
+Version: 0.5.0
 Summary: Code Ocean MCP Server
 Project-URL: Homepage, https://github.com/codeocean/codeocean-mcp-server
 Project-URL: Issues, https://github.com/codeocean/codeocean-mcp-server/issues
@@ -12,8 +12,8 @@ Classifier: License :: OSI Approved :: MIT License
 Classifier: Operating System :: OS Independent
 Classifier: Programming Language :: Python :: 3
 Requires-Python: >=3.10
-Requires-Dist: codeocean<0.9.0,>=0.8.0
-Requires-Dist: fastmcp>=2.9.2
+Requires-Dist: codeocean<0.11.0,>=0.10.0
+Requires-Dist: mcp<1.13.0,>=1.12.0
 Description-Content-Type: text/markdown
 
 # Code Ocean MCP Server
@@ -25,6 +25,7 @@ This MCP server provides tools to search and run capsules and pipelines, and man
 ## Table of Contents
 
 - [Prerequisites](#prerequisites)
+- [Code Ocean Platform Version Compatibility](#code-ocean-platform-version-compatibility)
 - [Installation](#installation)
     - [Visual Studio Code](#visual-studio-code)
     - [Claude Desktop](#claude-desktop)
@@ -32,6 +33,7 @@ This MCP server provides tools to search and run capsules and pipelines, and man
     - [Roo Code](#roo-code)
     - [Cursor](#cursor)
     - [Windsurf](#windsurf)
+- [Local Testing](#local-testing)
 
 ## Prerequisites
 
@@ -39,9 +41,16 @@ This MCP server provides tools to search and run capsules and pipelines, and man
 2. Install Python 3.10 or newer using `uv python install 3.10` (or a more recent version)
 3. Generate a Code Ocean access token. Follow instructions in the [Code Ocean user guide](https://docs.codeocean.com/user-guide/code-ocean-api/authentication).
 
+## Code Ocean Platform Version Compatibility
+
+Each release of this Code Ocean MCP Server is tested and verified against a specific minimum version of the Code Ocean platform API.
+Generally, this minimum version is the latest Code Ocean version at the time of the MCP Server release.
+We recommend ensuring your MCP Server dependency is pinned to a version compatible with your Code Ocean deployment.
+For details on when the minimum Code Ocean platform version changes, see the [CHANGELOG](CHANGELOG.md).
+
 ## Installation
 
-## [Visual Studio Code](https://code.visualstudio.com/docs/copilot/chat/mcp-servers)
+### [Visual Studio Code](https://code.visualstudio.com/docs/copilot/chat/mcp-servers)
 
 Here's an example VS Code MCP server configuration:
 ```json
@@ -74,7 +83,7 @@ Here's an example VS Code MCP server configuration:
 
 ---
 
-## [Claude Desktop](https://modelcontextprotocol.io/quickstart/user)
+### [Claude Desktop](https://modelcontextprotocol.io/quickstart/user)
 
 1.	Open the `claude_desktop_config.json` file:
  - macOS: `~/Library/Application Support/Claude/claude_desktop_config.json`
@@ -99,7 +108,7 @@ Here's an example VS Code MCP server configuration:
 
 ---
 
-## [Cline](https://docs.cline.bot/mcp/configuring-mcp-servers)
+### [Cline](https://docs.cline.bot/mcp/configuring-mcp-servers)
 
 Cline stores all of its MCP settings in a JSON file called cline_mcp_settings.json. You can edit this either through the GUI (“Configure MCP Servers” in the MCP Servers pane) or by hand:
 1.	Open Cline and click the MCP Servers icon in the sidebar.
@@ -126,11 +135,11 @@ Cline stores all of its MCP settings in a JSON file called cline_mcp_settings.js
 
 --- 
 
-## [Roo Code](https://docs.roocode.com/features/mcp/using-mcp-in-roo/)
+### [Roo Code](https://docs.roocode.com/features/mcp/using-mcp-in-roo/)
 
 Roo Code’s MCP support is configured globally across all workspaces via a JSON settings file or through its dedicated MCP Settings UI 
 
-### Via the MCP Settings UI:
+#### Via the MCP Settings UI:
 1.	Click the MCP icon in Roo Code’s sidebar.  
 2.	Select Edit MCP Settings (opens cline_mcp_settings.json).  
 3.	Under "mcpServers", add:
@@ -152,14 +161,14 @@ Roo Code’s MCP support is configured globally across all workspaces via a JSON
 ```
 4.	Save and restart Roo Code; your Code Ocean tools will appear automatically.
 
-### Optional: Manually editing cline_mcp_settings.json
+#### Optional: Manually editing cline_mcp_settings.json
 1.	Locate cline_mcp_settings.json (in your home directory or workspace).  
 2.	Insert the same "codeocean" block under "mcpServers" as above.
 3.	Save and restart.
 
 ---
 
-## [Cursor](https://docs.cursor.com/context/model-context-protocol)
+### [Cursor](https://docs.cursor.com/context/model-context-protocol)
 
 Cursor stores MCP servers in a JSON file at either ~/.cursor/mcp.json (global) or {project}/.cursor/mcp.json (project-specific)  .
 1.	Open .cursor/mcp.json (or create it if missing).  
@@ -183,7 +192,7 @@ Cursor stores MCP servers in a JSON file at either ~/.cursor/mcp.json (global) o
 
 ---
 
-## [Windsurf](https://docs.windsurf.com/windsurf/cascade/mcp)
+### [Windsurf](https://docs.windsurf.com/windsurf/cascade/mcp)
 
 Windsurf (Cascade) uses mcp_config.json under ~/.codeium/windsurf/ (or via the Cascade → MCP Servers UI)  .
 1.	Open your Windsurf Settings and navigate to Cascade → MCP Servers, then click View Raw Config to open mcp_config.json.  
@@ -204,4 +213,18 @@ Windsurf (Cascade) uses mcp_config.json under ~/.codeium/windsurf/ (or via the C
 }
 ```
 
-3.	Save and restart Windsurf (or hit “Refresh” in the MCP panel).
+3.	Save and restart Windsurf (or hit “Refresh” in the MCP panel).
+
+## Local Testing
+
+You can test the MCP server locally during development with [MCP Inspector](https://modelcontextprotocol.io/legacy/tools/inspector):
+
+```bash
+npx @modelcontextprotocol/inspector uvx --from . codeocean-mcp-server
+```
+
+This will start a web server where you can:
+
+- View available tools and resources
+- Test tool calls interactively
+- See server logs and responses

{codeocean_mcp_server-0.3.0 → codeocean_mcp_server-0.5.0}/README.md

@@ -7,6 +7,7 @@ This MCP server provides tools to search and run capsules and pipelines, and man
 ## Table of Contents
 
 - [Prerequisites](#prerequisites)
+- [Code Ocean Platform Version Compatibility](#code-ocean-platform-version-compatibility)
 - [Installation](#installation)
     - [Visual Studio Code](#visual-studio-code)
     - [Claude Desktop](#claude-desktop)
@@ -14,6 +15,7 @@ This MCP server provides tools to search and run capsules and pipelines, and man
     - [Roo Code](#roo-code)
     - [Cursor](#cursor)
     - [Windsurf](#windsurf)
+- [Local Testing](#local-testing)
 
 ## Prerequisites
 
@@ -21,9 +23,16 @@ This MCP server provides tools to search and run capsules and pipelines, and man
 2. Install Python 3.10 or newer using `uv python install 3.10` (or a more recent version)
 3. Generate a Code Ocean access token. Follow instructions in the [Code Ocean user guide](https://docs.codeocean.com/user-guide/code-ocean-api/authentication).
 
+## Code Ocean Platform Version Compatibility
+
+Each release of this Code Ocean MCP Server is tested and verified against a specific minimum version of the Code Ocean platform API.
+Generally, this minimum version is the latest Code Ocean version at the time of the MCP Server release.
+We recommend ensuring your MCP Server dependency is pinned to a version compatible with your Code Ocean deployment.
+For details on when the minimum Code Ocean platform version changes, see the [CHANGELOG](CHANGELOG.md).
+
 ## Installation
 
-## [Visual Studio Code](https://code.visualstudio.com/docs/copilot/chat/mcp-servers)
+### [Visual Studio Code](https://code.visualstudio.com/docs/copilot/chat/mcp-servers)
 
 Here's an example VS Code MCP server configuration:
 ```json
@@ -56,7 +65,7 @@ Here's an example VS Code MCP server configuration:
 
 ---
 
-## [Claude Desktop](https://modelcontextprotocol.io/quickstart/user)
+### [Claude Desktop](https://modelcontextprotocol.io/quickstart/user)
 
 1.	Open the `claude_desktop_config.json` file:
  - macOS: `~/Library/Application Support/Claude/claude_desktop_config.json`
@@ -81,7 +90,7 @@ Here's an example VS Code MCP server configuration:
 
 ---
 
-## [Cline](https://docs.cline.bot/mcp/configuring-mcp-servers)
+### [Cline](https://docs.cline.bot/mcp/configuring-mcp-servers)
 
 Cline stores all of its MCP settings in a JSON file called cline_mcp_settings.json. You can edit this either through the GUI (“Configure MCP Servers” in the MCP Servers pane) or by hand:
 1.	Open Cline and click the MCP Servers icon in the sidebar.
@@ -108,11 +117,11 @@ Cline stores all of its MCP settings in a JSON file called cline_mcp_settings.js
 
 --- 
 
-## [Roo Code](https://docs.roocode.com/features/mcp/using-mcp-in-roo/)
+### [Roo Code](https://docs.roocode.com/features/mcp/using-mcp-in-roo/)
 
 Roo Code’s MCP support is configured globally across all workspaces via a JSON settings file or through its dedicated MCP Settings UI 
 
-### Via the MCP Settings UI:
+#### Via the MCP Settings UI:
 1.	Click the MCP icon in Roo Code’s sidebar.  
 2.	Select Edit MCP Settings (opens cline_mcp_settings.json).  
 3.	Under "mcpServers", add:
@@ -134,14 +143,14 @@ Roo Code’s MCP support is configured globally across all workspaces via a JSON
 ```
 4.	Save and restart Roo Code; your Code Ocean tools will appear automatically.
 
-### Optional: Manually editing cline_mcp_settings.json
+#### Optional: Manually editing cline_mcp_settings.json
 1.	Locate cline_mcp_settings.json (in your home directory or workspace).  
 2.	Insert the same "codeocean" block under "mcpServers" as above.
 3.	Save and restart.
 
 ---
 
-## [Cursor](https://docs.cursor.com/context/model-context-protocol)
+### [Cursor](https://docs.cursor.com/context/model-context-protocol)
 
 Cursor stores MCP servers in a JSON file at either ~/.cursor/mcp.json (global) or {project}/.cursor/mcp.json (project-specific)  .
 1.	Open .cursor/mcp.json (or create it if missing).  
@@ -165,7 +174,7 @@ Cursor stores MCP servers in a JSON file at either ~/.cursor/mcp.json (global) o
 
 ---
 
-## [Windsurf](https://docs.windsurf.com/windsurf/cascade/mcp)
+### [Windsurf](https://docs.windsurf.com/windsurf/cascade/mcp)
 
 Windsurf (Cascade) uses mcp_config.json under ~/.codeium/windsurf/ (or via the Cascade → MCP Servers UI)  .
 1.	Open your Windsurf Settings and navigate to Cascade → MCP Servers, then click View Raw Config to open mcp_config.json.  
@@ -186,4 +195,18 @@ Windsurf (Cascade) uses mcp_config.json under ~/.codeium/windsurf/ (or via the C
 }
 ```
 
-3.	Save and restart Windsurf (or hit “Refresh” in the MCP panel).
+3.	Save and restart Windsurf (or hit “Refresh” in the MCP panel).
+
+## Local Testing
+
+You can test the MCP server locally during development with [MCP Inspector](https://modelcontextprotocol.io/legacy/tools/inspector):
+
+```bash
+npx @modelcontextprotocol/inspector uvx --from . codeocean-mcp-server
+```
+
+This will start a web server where you can:
+
+- View available tools and resources
+- Test tool calls interactively
+- See server logs and responses

{codeocean_mcp_server-0.3.0 → codeocean_mcp_server-0.5.0}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "codeocean-mcp-server"
-version = "0.3.0"
+version = "0.5.0"
 authors = [{ name = "Code Ocean", email = "dev@codeocean.com" }]
 description = "Code Ocean MCP Server"
 readme = "README.md"
@@ -11,8 +11,8 @@ classifiers = [
   "Operating System :: OS Independent",
 ]
 dependencies = [
-  "codeocean>=0.8.0,<0.9.0",
-  "fastmcp>=2.9.2",
+  "codeocean>=0.10.0,<0.11.0",
+  "mcp>=1.12.0,<1.13.0",
 ]
 license = "MIT"
 

{codeocean_mcp_server-0.3.0 → codeocean_mcp_server-0.5.0}/src/codeocean_mcp_server/server.py

@@ -3,7 +3,12 @@ import os
 from codeocean import CodeOcean
 from mcp.server.fastmcp import FastMCP
 
-from codeocean_mcp_server.tools import capsules, computations, data_assets
+from codeocean_mcp_server.tools import (
+    capsules,
+    computations,
+    custom_metadata,
+    data_assets,
+)
 
 
 def main():
@@ -12,15 +17,14 @@ def main():
     token = os.getenv("CODEOCEAN_TOKEN")
     if not domain or not token:
         raise ValueError(
-            "Environment variables CODEOCEAN_DOMAIN and "
-            "CODEOCEAN_TOKEN must be set."
+            "Environment variables CODEOCEAN_DOMAIN and " "CODEOCEAN_TOKEN must be set."
         )
     agent_id = os.getenv("AGENT_ID", "AI Agent")
     client = CodeOcean(domain=domain, token=token, agent_id=agent_id)
 
     mcp = FastMCP(
         name="Code Ocean",
-        description=(
+        instructions=(
             f"MCP server for Code Ocean: search & run capsules, "
             f"pipelines, and assets using Code Ocean domain {domain}."
         ),
@@ -29,6 +33,7 @@ def main():
     capsules.add_tools(mcp, client)
     data_assets.add_tools(mcp, client)
     computations.add_tools(mcp, client)
+    custom_metadata.add_tools(mcp, client)
 
     mcp.run()
 

{codeocean_mcp_server-0.3.0 → codeocean_mcp_server-0.5.0}/src/codeocean_mcp_server/tools/capsules.py

@@ -1,5 +1,6 @@
 from codeocean import CodeOcean
 from codeocean.capsule import (
+    AppPanel,
     Capsule,
     CapsuleSearchParams,
     CapsuleSearchResults,
@@ -11,6 +12,7 @@ from mcp.server.fastmcp import FastMCP
 
 from codeocean_mcp_server.models import dataclass_to_pydantic
 
+AppPanelModel = dataclass_to_pydantic(AppPanel)
 CapsuleSearchParamsModel = dataclass_to_pydantic(CapsuleSearchParams)
 DataAssetAttachParamsModel = dataclass_to_pydantic(DataAssetAttachParams)
 
@@ -65,3 +67,8 @@ def add_tools(mcp: FastMCP, client: CodeOcean):
     def list_computations(capsule_id: str) -> list[Computation]:
         """List all computations for a capsule."""
         return client.capsules.list_computations(capsule_id)
+
+    @mcp.tool(description=client.capsules.get_capsule_app_panel.__doc__)
+    def get_capsule_app_panel(capsule_id: str, version: int | None = None) -> AppPanelModel:
+        """Retrieve the app panel for a capsule, optionally for a specific version."""
+        return client.capsules.get_capsule_app_panel(capsule_id, version)

codeocean_mcp_server-0.5.0/src/codeocean_mcp_server/tools/custom_metadata.py

@@ -0,0 +1,16 @@
+from codeocean import CodeOcean
+from codeocean.custom_metadata import CustomMetadata
+from mcp.server.fastmcp import FastMCP
+
+from codeocean_mcp_server.models import dataclass_to_pydantic
+
+CustomMetadataModel = dataclass_to_pydantic(CustomMetadata)
+
+
+def add_tools(mcp: FastMCP, client: CodeOcean):
+    """Add custom_metadata tools to the MCP server."""
+
+    @mcp.tool(description=client.custom_metadata.get_custom_metadata.__doc__)
+    def get_custom_metadata() -> CustomMetadataModel:
+        """Retrieve custom metadata."""
+        return client.custom_metadata.get_custom_metadata()

{codeocean_mcp_server-0.3.0 → codeocean_mcp_server-0.5.0}/uv.lock

@@ -1,5 +1,5 @@
 version = 1
-revision = 2
+revision = 3
 requires-python = ">=3.10"
 
 [[package]]
@@ -151,18 +151,6 @@ wheels = [
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 ]
 
-[[package]]
-name = "authlib"
-version = "1.6.0"
-source = { registry = "https://pypi.org/simple" }
-dependencies = [
-    { name = "cryptography" },
-]
-sdist = { url = "https://files.pythonhosted.org/packages/a2/9d/b1e08d36899c12c8b894a44a5583ee157789f26fc4b176f8e4b6217b56e1/authlib-1.6.0.tar.gz", hash = "sha256:4367d32031b7af175ad3a323d571dc7257b7099d55978087ceae4a0d88cd3210", size = 158371, upload-time = "2025-05-23T00:21:45.011Z" }
-wheels = [
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-]
-
 [[package]]
 name = "backports-strenum"
 version = "1.3.1"
@@ -350,7 +338,7 @@ wheels = [
 
 [[package]]
 name = "codeocean"
-version = "0.8.0"
+version = "0.10.0"
 source = { registry = "https://pypi.org/simple" }
 dependencies = [
     { name = "backports-strenum", marker = "python_full_version < '3.11'" },
@@ -358,18 +346,18 @@ dependencies = [
     { name = "requests" },
     { name = "requests-toolbelt" },
 ]
-sdist = { url = "https://files.pythonhosted.org/packages/e6/66/c947525bd7bdbc8dd337b3ab0badd4be9c47a4869404640c6e000e3ec5a8/codeocean-0.8.0.tar.gz", hash = "sha256:fbbff4de028f034495584731ca3a4830d9a90a97b88839cfe16aeaebb5caa561", size = 15530, upload-time = "2025-07-11T16:50:17.372Z" }
+sdist = { url = "https://files.pythonhosted.org/packages/5b/1a/c7edc172712bf5cf71ed824d554db2d9f076ed54c31449c81955d615897b/codeocean-0.10.0.tar.gz", hash = "sha256:36c7b4a569a8ee538dc85ea46a2392d608f18622e2e5db9db07473e7a0fc5776", size = 19099, upload-time = "2025-09-01T10:06:09.616Z" }
 wheels = [
-    { url = "https://files.pythonhosted.org/packages/9e/16/d8a220ef5ea2f938be973394f23687208dcfb3ba737c022e88f3d6a97134/codeocean-0.8.0-py3-none-any.whl", hash = "sha256:73feba7c9c2c03a21ba07feaf0e946e3087d2d29af38efbd61d452dd7a8ef1a5", size = 16365, upload-time = "2025-07-11T16:50:18.622Z" },
+    { url = "https://files.pythonhosted.org/packages/ec/79/3fb1d8b67a975992c0628bc30c0e53148391dd8731d919e1e98486bb1755/codeocean-0.10.0-py3-none-any.whl", hash = "sha256:cd6a564af9d46d21d06ad62d836782537d7b8e1e4641a56fd1590cd316d333ea", size = 19923, upload-time = "2025-09-01T10:06:10.349Z" },
 ]
 
 [[package]]
 name = "codeocean-mcp-server"
-version = "0.3.0"
+version = "0.5.0"
 source = { editable = "." }
 dependencies = [
     { name = "codeocean" },
-    { name = "fastmcp" },
+    { name = "mcp" },
 ]
 
 [package.dev-dependencies]
@@ -384,8 +372,8 @@ dev = [
 
 [package.metadata]
 requires-dist = [
-    { name = "codeocean", specifier = ">=0.8.0,<0.9.0" },
-    { name = "fastmcp", specifier = ">=2.9.2" },
+    { name = "codeocean", specifier = ">=0.10.0,<0.11.0" },
+    { name = "mcp", specifier = ">=1.12.0,<1.13.0" },
 ]
 
 [package.metadata.requires-dev]
@@ -416,7 +404,6 @@ dependencies = [
 ]
 sdist = { url = "https://files.pythonhosted.org/packages/fe/c8/a2a376a8711c1e11708b9c9972e0c3223f5fc682552c82d8db844393d6ce/cryptography-45.0.4.tar.gz", hash = "sha256:7405ade85c83c37682c8fe65554759800a4a8c54b2d96e0f8ad114d31b808d57", size = 744890, upload-time = "2025-06-10T00:03:51.297Z" }
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