code-graph-rag 0.1.90__tar.gz → 0.2.10__tar.gz

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Files changed (458) hide show
  1. {code_graph_rag-0.1.90/code_graph_rag.egg-info → code_graph_rag-0.2.10}/PKG-INFO +43 -17
  2. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/PYPI_README.md +33 -14
  3. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/README.md +16 -10
  4. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10/code_graph_rag.egg-info}/PKG-INFO +43 -17
  5. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/code_graph_rag.egg-info/SOURCES.txt +21 -0
  6. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/code_graph_rag.egg-info/requires.txt +13 -2
  7. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/cli.py +64 -4
  8. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/config.py +46 -5
  9. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/constants/__init__.py +2 -0
  10. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/constants/ast_python.py +7 -0
  11. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/constants/build.py +6 -5
  12. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/constants/cli.py +12 -0
  13. code_graph_rag-0.2.10/codebase_rag/constants/embedded_graph.py +716 -0
  14. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/constants/graph.py +9 -4
  15. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/constants/health.py +8 -4
  16. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/constants/providers.py +4 -0
  17. code_graph_rag-0.2.10/codebase_rag/constants/sqlite_vectors.py +93 -0
  18. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/cypher_queries.py +306 -104
  19. code_graph_rag-0.2.10/codebase_rag/editing/signature_bind.py +608 -0
  20. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/editing/signature_spec.py +2 -1
  21. code_graph_rag-0.2.10/codebase_rag/embedded_graph/compiler.py +804 -0
  22. code_graph_rag-0.2.10/codebase_rag/embedded_graph/connection.py +147 -0
  23. code_graph_rag-0.2.10/codebase_rag/embedded_graph/cypher_ast.py +286 -0
  24. code_graph_rag-0.2.10/codebase_rag/embedded_graph/executor.py +1111 -0
  25. code_graph_rag-0.2.10/codebase_rag/embedded_graph/expressions.py +833 -0
  26. code_graph_rag-0.2.10/codebase_rag/embedded_graph/extension.py +22 -0
  27. code_graph_rag-0.2.10/codebase_rag/embedded_graph/functions.py +329 -0
  28. code_graph_rag-0.2.10/codebase_rag/embedded_graph/lexer.py +207 -0
  29. code_graph_rag-0.2.10/codebase_rag/embedded_graph/limits.py +63 -0
  30. code_graph_rag-0.2.10/codebase_rag/embedded_graph/native.py +459 -0
  31. code_graph_rag-0.2.10/codebase_rag/embedded_graph/parser.py +830 -0
  32. code_graph_rag-0.2.10/codebase_rag/embedded_graph/procedures.py +459 -0
  33. code_graph_rag-0.2.10/codebase_rag/embedded_graph/sql.py +858 -0
  34. code_graph_rag-0.2.10/codebase_rag/embedded_graph/store.py +178 -0
  35. code_graph_rag-0.2.10/codebase_rag/embedded_graph/types.py +139 -0
  36. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/exceptions.py +27 -0
  37. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/graph_dialects.py +18 -0
  38. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/logs.py +12 -0
  39. code_graph_rag-0.2.10/codebase_rag/mgclient_compat.py +66 -0
  40. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/mgclient_probe.py +5 -5
  41. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/prompts.py +51 -22
  42. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/services/graph_service.py +161 -19
  43. code_graph_rag-0.2.10/codebase_rag/sqlite_vectors.py +186 -0
  44. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/stack/health.py +2 -2
  45. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/stack/manager.py +96 -16
  46. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/tools/health_checker.py +13 -6
  47. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/types_defs.py +17 -0
  48. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/utils/dependencies.py +7 -0
  49. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/utils/path_utils.py +19 -0
  50. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/vector_store.py +196 -3
  51. code_graph_rag-0.2.10/codec/__init__.py +0 -0
  52. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/pyproject.toml +54 -6
  53. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/LICENSE +0 -0
  54. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/cgr/__init__.py +0 -0
  55. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/code_graph_rag.egg-info/dependency_links.txt +0 -0
  56. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/code_graph_rag.egg-info/entry_points.txt +0 -0
  57. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/code_graph_rag.egg-info/top_level.txt +0 -0
  58. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/__init__.py +0 -0
  59. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/_cli_env.py +0 -0
  60. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/__init__.py +0 -0
  61. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_analyzer.py +0 -0
  62. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/patterns/c.yaml +0 -0
  63. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/patterns/cpp.yaml +0 -0
  64. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/patterns/csharp.yaml +0 -0
  65. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/patterns/dart.yaml +0 -0
  66. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/patterns/go.yaml +0 -0
  67. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/patterns/java.yaml +0 -0
  68. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/patterns/javascript.yaml +0 -0
  69. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/patterns/lua.yaml +0 -0
  70. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/patterns/php.yaml +0 -0
  71. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/patterns/python.yaml +0 -0
  72. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/patterns/ruby.yaml +0 -0
  73. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/patterns/rust.yaml +0 -0
  74. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/patterns/scala.yaml +0 -0
  75. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/patterns/tsx.yaml +0 -0
  76. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/patterns/typescript.yaml +0 -0
  77. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/security/c.yaml +0 -0
  78. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/security/cpp.yaml +0 -0
  79. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/security/csharp.yaml +0 -0
  80. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/security/dart.yaml +0 -0
  81. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/security/go.yaml +0 -0
  82. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/security/java.yaml +0 -0
  83. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/security/javascript.yaml +0 -0
  84. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/security/lua.yaml +0 -0
  85. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/security/php.yaml +0 -0
  86. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/security/python.yaml +0 -0
  87. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/security/ruby.yaml +0 -0
  88. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/security/rust.yaml +0 -0
  89. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/security/scala.yaml +0 -0
  90. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/security/tsx.yaml +0 -0
  91. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/security/typescript.yaml +0 -0
  92. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/smells/c.yaml +0 -0
  93. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/smells/cpp.yaml +0 -0
  94. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/smells/csharp.yaml +0 -0
  95. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/smells/dart.yaml +0 -0
  96. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/smells/go.yaml +0 -0
  97. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/smells/java.yaml +0 -0
  98. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/smells/javascript.yaml +0 -0
  99. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/smells/lua.yaml +0 -0
  100. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/smells/php.yaml +0 -0
  101. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/smells/python.yaml +0 -0
  102. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/smells/ruby.yaml +0 -0
  103. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/smells/rust.yaml +0 -0
  104. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/smells/scala.yaml +0 -0
  105. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/smells/tsx.yaml +0 -0
  106. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/analyzers/ast_grep_rules/smells/typescript.yaml +0 -0
  107. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/ast_cache.py +0 -0
  108. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/capture.py +0 -0
  109. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/check_isolation.py +0 -0
  110. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/checkout_state.py +0 -0
  111. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/cli_help.py +0 -0
  112. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/cli_runtime.py +0 -0
  113. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/console_marks.py +0 -0
  114. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/constants/ast_cpp.py +0 -0
  115. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/constants/ast_csharp.py +0 -0
  116. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/constants/ast_dart.py +0 -0
  117. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/constants/ast_go.py +0 -0
  118. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/constants/ast_java.py +0 -0
  119. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/constants/ast_js.py +0 -0
  120. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/constants/ast_julia.py +0 -0
  121. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/constants/ast_lua.py +0 -0
  122. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/constants/ast_nodes.py +0 -0
  123. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/constants/ast_php.py +0 -0
  124. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/constants/ast_rust.py +0 -0
  125. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/constants/ast_scala.py +0 -0
  126. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/constants/ast_sql.py +0 -0
  127. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/constants/core.py +0 -0
  128. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/constants/deadcode_roots.py +0 -0
  129. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/constants/deps.py +0 -0
  130. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/constants/duplicates.py +0 -0
  131. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/constants/fqn_specs.py +0 -0
  132. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/constants/interface.py +0 -0
  133. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/constants/lang_tooling.py +0 -0
  134. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/constants/languages.py +0 -0
  135. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/constants/mcp.py +0 -0
  136. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/constants/notebook.py +0 -0
  137. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/constants/security.py +0 -0
  138. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/constants/stdlib_types.py +0 -0
  139. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/constants/structural.py +0 -0
  140. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/constants/trace.py +0 -0
  141. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/context_pruning.py +0 -0
  142. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/context_slice.py +0 -0
  143. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/crash_correlation.py +0 -0
  144. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/dead_code.py +0 -0
  145. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/decorators.py +0 -0
  146. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/docker-compose.yaml +0 -0
  147. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/duplicates.py +0 -0
  148. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/editing/__init__.py +0 -0
  149. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/editing/cli.py +0 -0
  150. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/editing/contract.py +0 -0
  151. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/editing/import_paths.py +0 -0
  152. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/editing/imports.py +0 -0
  153. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/editing/occurrences.py +0 -0
  154. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/editing/patcher.py +0 -0
  155. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/editing/rename.py +0 -0
  156. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/editing/signature_contract.py +0 -0
  157. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/editing/sites.py +0 -0
  158. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/editing/transaction.py +0 -0
  159. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/editor_links.py +0 -0
  160. {code_graph_rag-0.1.90/codebase_rag/providers → code_graph_rag-0.2.10/codebase_rag/embedded_graph}/__init__.py +0 -0
  161. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/embedder.py +0 -0
  162. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/flow_verdict.py +0 -0
  163. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/function_registry.py +0 -0
  164. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/gloss.py +0 -0
  165. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/gloss_anchor.py +0 -0
  166. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/gloss_repair.py +0 -0
  167. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/graph_audit.py +0 -0
  168. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/graph_cli.py +0 -0
  169. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/graph_loader.py +0 -0
  170. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/graph_query.py +0 -0
  171. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/graph_updater.py +0 -0
  172. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/interface_skip.py +0 -0
  173. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/language_spec.py +0 -0
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  359. {code_graph_rag-0.1.90/codebase_rag/tools → code_graph_rag-0.2.10/codebase_rag/providers}/__init__.py +0 -0
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  381. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/services/llm.py +0 -0
  382. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/services/neo4j_driver.py +0 -0
  383. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/services/protobuf_service.py +0 -0
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  390. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/stack/constants.py +0 -0
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  397. {code_graph_rag-0.1.90/codebase_rag/utils → code_graph_rag-0.2.10/codebase_rag/tools}/__init__.py +0 -0
  398. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/tools/ast_grep_service.py +0 -0
  399. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/tools/code_retrieval.py +0 -0
  400. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/tools/codebase_query.py +0 -0
  401. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/tools/directory_lister.py +0 -0
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  411. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/tools/semantic_search.py +0 -0
  412. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/tools/shell_command.py +0 -0
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  417. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/trace/__init__.py +0 -0
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  426. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/trace/pytest_plugin.py +0 -0
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  429. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/trace/rust_pprof.py +0 -0
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  434. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/tree_sitter_point.py +0 -0
  435. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/unixcoder.py +0 -0
  436. {code_graph_rag-0.1.90/codec → code_graph_rag-0.2.10/codebase_rag/utils}/__init__.py +0 -0
  437. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/utils/cpp_signatures.py +0 -0
  438. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/utils/endpoints.py +0 -0
  439. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/utils/fqn_resolver.py +0 -0
  440. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/utils/interruptible_thread.py +0 -0
  441. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/utils/json_io.py +0 -0
  442. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/utils/process_owner.py +0 -0
  443. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/utils/qn_markers.py +0 -0
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  450. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/workspaces/__init__.py +0 -0
  451. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/workspaces/cli.py +0 -0
  452. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/workspaces/constants.py +0 -0
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  454. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codebase_rag/workspaces/storage.py +0 -0
  455. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codec/schema.proto +0 -0
  456. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codec/schema_pb2.py +0 -0
  457. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/codec/schema_pb2.pyi +0 -0
  458. {code_graph_rag-0.1.90 → code_graph_rag-0.2.10}/setup.cfg +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
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2
  Name: code-graph-rag
3
- Version: 0.1.90
3
+ Version: 0.2.10
4
4
  Summary: The ultimate RAG for your monorepo. Query, understand, and edit multi-language codebases with the power of AI and knowledge graphs
5
5
  License-Expression: MIT
6
6
  Keywords: rag,retrieval-augmented-generation,knowledge-graph,code-analysis,tree-sitter,mcp,mcp-server,llm,graph-database,semantic-search,codebase,memgraph,developer-tools,monorepo
@@ -19,10 +19,9 @@ Requires-Python: >=3.12
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  Description-Content-Type: text/markdown
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  License-File: LICENSE
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  Requires-Dist: loguru>=0.7.3
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- Requires-Dist: mcp<2,>=1.28.1
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+ Requires-Dist: mcp<2,>=1.30.0
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  Requires-Dist: pydantic-ai-slim[anthropic,google,openai]>=2.0.0
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  Requires-Dist: pydantic-settings>=2.12.0
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- Requires-Dist: pymgclient>=1.6.0
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  Requires-Dist: python-dotenv>=1.2.1
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  Requires-Dist: tiktoken>=0.12.0
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  Requires-Dist: tomli-w>=1.2.0
@@ -39,6 +38,8 @@ Requires-Dist: defusedxml>=0.7.1
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  Requires-Dist: huggingface-hub[hf-xet]>=1.7.2
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  Requires-Dist: pathspec>=1.0.4
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  Requires-Dist: pygments>=2.20.0
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+ Requires-Dist: regex>=2024.11.6
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+ Requires-Dist: cgr-graph-rs<0.2,>=0.1.0; platform_python_implementation == "CPython" and ((sys_platform == "linux" and (platform_machine == "x86_64" or platform_machine == "aarch64")) or sys_platform == "darwin" or (sys_platform == "win32" and platform_machine == "AMD64"))
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  Provides-Extra: test
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  Requires-Dist: jedi>=0.19; extra == "test"
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  Requires-Dist: pytest>=8.4.1; extra == "test"
@@ -50,8 +51,12 @@ Requires-Dist: libclang>=18.1.1; extra == "test"
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  Requires-Dist: filelock>=3.12; extra == "test"
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  Requires-Dist: ast-grep-py>=0.44.0; extra == "test"
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  Requires-Dist: pyyaml>=6.0; extra == "test"
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+ Requires-Dist: pymgclient>=1.6.0; extra == "test"
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+ Requires-Dist: sqlite-vec>=0.1.9; extra == "test"
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  Provides-Extra: cpp
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  Requires-Dist: libclang>=18.1.1; extra == "cpp"
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+ Provides-Extra: memgraph
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+ Requires-Dist: pymgclient>=1.6.0; extra == "memgraph"
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  Provides-Extra: neo4j
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  Requires-Dist: neo4j>=5.28.1; extra == "neo4j"
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  Provides-Extra: treesitter-full
@@ -77,6 +82,8 @@ Requires-Dist: torch>=2.6.0; extra == "semantic"
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  Requires-Dist: transformers>=5.0.0; extra == "semantic"
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  Provides-Extra: milvus
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  Requires-Dist: pymilvus[milvus-lite]>=3.0.0; extra == "milvus"
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+ Provides-Extra: sqlite-vec
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+ Requires-Dist: sqlite-vec>=0.1.9; extra == "sqlite-vec"
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  Provides-Extra: ast-grep
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  Requires-Dist: ast-grep-py>=0.44.0; extra == "ast-grep"
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  Requires-Dist: pyyaml>=6.0; extra == "ast-grep"
@@ -86,7 +93,7 @@ Dynamic: license-file
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  # Code-Graph-RAG
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95
 
89
- Code-Graph-RAG parses a multi-language codebase with Tree-sitter, sharpened by compiler-grade frontends and runtime traces where available, builds a knowledge graph of its structure in Memgraph, and lets you query, edit, and optimise that code in plain English. It works across a monorepo of mixed languages under one unified graph schema.
96
+ Code-Graph-RAG parses a multi-language codebase with Tree-sitter, sharpened by compiler-grade frontends and runtime traces where available, builds a knowledge graph of its structure in an embedded graph database that needs no server, and lets you query, edit, and optimise that code in plain English. It works across a monorepo of mixed languages under one unified graph schema.
90
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91
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  ## What It Does
92
99
 
@@ -131,7 +138,9 @@ pip install 'code-graph-rag[semantic]'
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  Qdrant is the default vector store for semantic search. To use Milvus Lite,
132
139
  install `code-graph-rag[semantic,milvus]`, then set
133
140
  `CGR_VECTOR_STORE_BACKEND=milvus` and `MILVUS_URI=./.milvus_code_embeddings.db`
134
- before indexing.
141
+ before indexing. To keep the vectors in a SQLite file beside the embedded graph
142
+ (`~/.cgr/vectors.sqlite`, no server), install `code-graph-rag[semantic,sqlite-vec]`
143
+ and set `CGR_VECTOR_STORE_BACKEND=sqlite`.
135
144
 
136
145
  To compute embeddings on an OpenAI-compatible endpoint (OpenAI, Ollama, vLLM)
137
146
  instead of locally, set `CGR_EMBEDDING_PROVIDER=openai` with
@@ -166,14 +175,22 @@ for git installs and the other methods.
166
175
  ### Prerequisites
167
176
 
168
177
  - Python 3.12+
169
- - Docker (for Memgraph)
170
- - `cmake` (for building pymgclient)
171
178
  - `ripgrep` (`rg`) (for shell command text searching)
179
+ - Only for the optional Memgraph backend: Docker, and `cmake` where no
180
+ `pymgclient` wheel fits your platform
181
+
182
+ The knowledge graph is an embedded SQLite file (`~/.cgr/graph.sqlite`), so there
183
+ is no database server to run. Memgraph and Neo4j remain available as opt-in
184
+ backends; see [Graph Backends](https://docs.code-graph-rag.com/architecture/embedded-graph/).
172
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173
186
  The wheel is pure Python (`py3-none-any`), so it installs on any platform with
174
- Python 3.12 or newer. Some distributions ship an older interpreter (Debian
175
- Bookworm, and so Raspberry Pi OS Bookworm, ships 3.11), which also explains the
176
- failed piwheels Bookworm build. On those systems, see the [installation
187
+ Python 3.12 or newer. On Linux (x86_64, aarch64), macOS and Windows x64 it also
188
+ pulls in `cgr-graph-rs`, a native extension that speeds up the embedded graph;
189
+ elsewhere the same engine runs in pure Python.
190
+
191
+ Some distributions ship an older interpreter (Debian Bookworm, and so Raspberry
192
+ Pi OS Bookworm, ships 3.11), which also explains the failed piwheels Bookworm
193
+ build. On those systems, see the [installation
177
194
  guide](https://github.com/vitali87/code-graph-rag/blob/main/docs/getting-started/installation.md#older-system-interpreters)
178
195
  for the available interpreter-pinning alternatives.
179
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@@ -181,14 +198,17 @@ for the available interpreter-pinning alternatives.
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182
199
  The package installs a `cgr` command.
183
200
 
184
- **Start Memgraph, parse a repo, and query it:**
201
+ **Parse a repo, then query it:**
185
202
 
186
203
  ```bash
187
- cgr daemon up # start Memgraph + Qdrant
188
- cgr start --repo-path ./my-project \
189
- --update-graph --clean # parse & launch interactive chat
204
+ cgr start --repo-path ./my-project --update-graph # parse into the graph
205
+ cgr start --repo-path ./my-project # launch the interactive chat
190
206
  ```
191
207
 
208
+ The graph is written to `~/.cgr/graph.sqlite`. To use Memgraph instead, install
209
+ `code-graph-rag[memgraph]`, set `GRAPH_BACKEND=memgraph`, and start the packaged
210
+ Memgraph + Qdrant stack with `cgr daemon up`.
211
+
192
212
  **Index to protobuf for offline use:**
193
213
 
194
214
  ```bash
@@ -295,7 +315,11 @@ for fn in functions[:5]:
295
315
  print(f"{fn.properties['name']}: {len(rels)} relationships")
296
316
  ```
297
317
 
298
- ### Query Memgraph with Cypher
318
+ ### Query the graph with Cypher
319
+
320
+ `MemgraphIngestor` keeps its original name but works with whichever backend
321
+ `GRAPH_BACKEND` selects. On the default embedded graph, `host` and `port` are
322
+ not used.
299
323
 
300
324
  ```python
301
325
  from cgr import MemgraphIngestor
@@ -348,8 +372,10 @@ Configure via `.env` or environment variables:
348
372
 
349
373
  | Variable | Default | Description |
350
374
  |----------|---------|-------------|
351
- | `MEMGRAPH_HOST` | `localhost` | Memgraph hostname |
352
- | `MEMGRAPH_PORT` | `7687` | Memgraph port |
375
+ | `GRAPH_BACKEND` | `sqlite` | Graph engine: `sqlite` (embedded), `memgraph`, or `neo4j` |
376
+ | `SQLITE_GRAPH_PATH` | `~/.cgr/graph.sqlite` | Embedded graph file |
377
+ | `MEMGRAPH_HOST` | `localhost` | Memgraph hostname (with `GRAPH_BACKEND=memgraph`) |
378
+ | `MEMGRAPH_PORT` | `7687` | Memgraph port (with `GRAPH_BACKEND=memgraph`) |
353
379
  | `ORCHESTRATOR_PROVIDER` | | Provider: `google`, `openai`, `anthropic`, `azure`, `ollama`, `minimax`, `litellm_proxy` |
354
380
  | `ORCHESTRATOR_MODEL` | | Model ID (e.g. `gpt-5.6-terra`, `gemini-3.6-flash`, `claude-sonnet-5`, `qwen2.5-coder`) |
355
381
  | `ORCHESTRATOR_API_KEY` | | API key for the provider (not needed for `ollama`) |
@@ -1,6 +1,6 @@
1
1
  # Code-Graph-RAG
2
2
 
3
- Code-Graph-RAG parses a multi-language codebase with Tree-sitter, sharpened by compiler-grade frontends and runtime traces where available, builds a knowledge graph of its structure in Memgraph, and lets you query, edit, and optimise that code in plain English. It works across a monorepo of mixed languages under one unified graph schema.
3
+ Code-Graph-RAG parses a multi-language codebase with Tree-sitter, sharpened by compiler-grade frontends and runtime traces where available, builds a knowledge graph of its structure in an embedded graph database that needs no server, and lets you query, edit, and optimise that code in plain English. It works across a monorepo of mixed languages under one unified graph schema.
4
4
 
5
5
  ## What It Does
6
6
 
@@ -45,7 +45,9 @@ pip install 'code-graph-rag[semantic]'
45
45
  Qdrant is the default vector store for semantic search. To use Milvus Lite,
46
46
  install `code-graph-rag[semantic,milvus]`, then set
47
47
  `CGR_VECTOR_STORE_BACKEND=milvus` and `MILVUS_URI=./.milvus_code_embeddings.db`
48
- before indexing.
48
+ before indexing. To keep the vectors in a SQLite file beside the embedded graph
49
+ (`~/.cgr/vectors.sqlite`, no server), install `code-graph-rag[semantic,sqlite-vec]`
50
+ and set `CGR_VECTOR_STORE_BACKEND=sqlite`.
49
51
 
50
52
  To compute embeddings on an OpenAI-compatible endpoint (OpenAI, Ollama, vLLM)
51
53
  instead of locally, set `CGR_EMBEDDING_PROVIDER=openai` with
@@ -80,14 +82,22 @@ for git installs and the other methods.
80
82
  ### Prerequisites
81
83
 
82
84
  - Python 3.12+
83
- - Docker (for Memgraph)
84
- - `cmake` (for building pymgclient)
85
85
  - `ripgrep` (`rg`) (for shell command text searching)
86
+ - Only for the optional Memgraph backend: Docker, and `cmake` where no
87
+ `pymgclient` wheel fits your platform
88
+
89
+ The knowledge graph is an embedded SQLite file (`~/.cgr/graph.sqlite`), so there
90
+ is no database server to run. Memgraph and Neo4j remain available as opt-in
91
+ backends; see [Graph Backends](https://docs.code-graph-rag.com/architecture/embedded-graph/).
86
92
 
87
93
  The wheel is pure Python (`py3-none-any`), so it installs on any platform with
88
- Python 3.12 or newer. Some distributions ship an older interpreter (Debian
89
- Bookworm, and so Raspberry Pi OS Bookworm, ships 3.11), which also explains the
90
- failed piwheels Bookworm build. On those systems, see the [installation
94
+ Python 3.12 or newer. On Linux (x86_64, aarch64), macOS and Windows x64 it also
95
+ pulls in `cgr-graph-rs`, a native extension that speeds up the embedded graph;
96
+ elsewhere the same engine runs in pure Python.
97
+
98
+ Some distributions ship an older interpreter (Debian Bookworm, and so Raspberry
99
+ Pi OS Bookworm, ships 3.11), which also explains the failed piwheels Bookworm
100
+ build. On those systems, see the [installation
91
101
  guide](https://github.com/vitali87/code-graph-rag/blob/main/docs/getting-started/installation.md#older-system-interpreters)
92
102
  for the available interpreter-pinning alternatives.
93
103
 
@@ -95,14 +105,17 @@ for the available interpreter-pinning alternatives.
95
105
 
96
106
  The package installs a `cgr` command.
97
107
 
98
- **Start Memgraph, parse a repo, and query it:**
108
+ **Parse a repo, then query it:**
99
109
 
100
110
  ```bash
101
- cgr daemon up # start Memgraph + Qdrant
102
- cgr start --repo-path ./my-project \
103
- --update-graph --clean # parse & launch interactive chat
111
+ cgr start --repo-path ./my-project --update-graph # parse into the graph
112
+ cgr start --repo-path ./my-project # launch the interactive chat
104
113
  ```
105
114
 
115
+ The graph is written to `~/.cgr/graph.sqlite`. To use Memgraph instead, install
116
+ `code-graph-rag[memgraph]`, set `GRAPH_BACKEND=memgraph`, and start the packaged
117
+ Memgraph + Qdrant stack with `cgr daemon up`.
118
+
106
119
  **Index to protobuf for offline use:**
107
120
 
108
121
  ```bash
@@ -209,7 +222,11 @@ for fn in functions[:5]:
209
222
  print(f"{fn.properties['name']}: {len(rels)} relationships")
210
223
  ```
211
224
 
212
- ### Query Memgraph with Cypher
225
+ ### Query the graph with Cypher
226
+
227
+ `MemgraphIngestor` keeps its original name but works with whichever backend
228
+ `GRAPH_BACKEND` selects. On the default embedded graph, `host` and `port` are
229
+ not used.
213
230
 
214
231
  ```python
215
232
  from cgr import MemgraphIngestor
@@ -262,8 +279,10 @@ Configure via `.env` or environment variables:
262
279
 
263
280
  | Variable | Default | Description |
264
281
  |----------|---------|-------------|
265
- | `MEMGRAPH_HOST` | `localhost` | Memgraph hostname |
266
- | `MEMGRAPH_PORT` | `7687` | Memgraph port |
282
+ | `GRAPH_BACKEND` | `sqlite` | Graph engine: `sqlite` (embedded), `memgraph`, or `neo4j` |
283
+ | `SQLITE_GRAPH_PATH` | `~/.cgr/graph.sqlite` | Embedded graph file |
284
+ | `MEMGRAPH_HOST` | `localhost` | Memgraph hostname (with `GRAPH_BACKEND=memgraph`) |
285
+ | `MEMGRAPH_PORT` | `7687` | Memgraph port (with `GRAPH_BACKEND=memgraph`) |
267
286
  | `ORCHESTRATOR_PROVIDER` | | Provider: `google`, `openai`, `anthropic`, `azure`, `ollama`, `minimax`, `litellm_proxy` |
268
287
  | `ORCHESTRATOR_MODEL` | | Model ID (e.g. `gpt-5.6-terra`, `gemini-3.6-flash`, `claude-sonnet-5`, `qwen2.5-coder`) |
269
288
  | `ORCHESTRATOR_API_KEY` | | API key for the provider (not needed for `ollama`) |
@@ -42,13 +42,13 @@
42
42
 
43
43
  # Code-Graph-RAG
44
44
 
45
- Code-Graph-RAG parses a multi-language codebase with Tree-sitter, sharpened by compiler-grade frontends and runtime traces where available, builds a knowledge graph of its structure in Memgraph, and lets you query, edit, and optimise that code in plain English. It works across a monorepo of mixed languages under one unified graph schema.
45
+ Code-Graph-RAG parses a multi-language codebase with Tree-sitter, sharpened by compiler-grade frontends and runtime traces where available, builds a knowledge graph of its structure in an embedded graph database that needs no server, and lets you query, edit, and optimise that code in plain English. It works across a monorepo of mixed languages under one unified graph schema.
46
46
 
47
47
  <p align="center">
48
48
  <b>1. Index:</b> <code>cgr start --update-graph</code> parses a repository into a knowledge graph (sped up)
49
49
  </p>
50
50
  <p align="center">
51
- <img src="./assets/demo-indexing.gif" alt="cgr parsing the code-graph-rag repository into a Memgraph knowledge graph, then printing node and relationship counts">
51
+ <img src="./assets/demo-indexing.gif" alt="cgr parsing the code-graph-rag repository into a knowledge graph, then printing node and relationship counts">
52
52
  </p>
53
53
 
54
54
  <p align="center">
@@ -61,8 +61,7 @@ Code-Graph-RAG parses a multi-language codebase with Tree-sitter, sharpened by c
61
61
  ## Latest News 🔥
62
62
 
63
63
  <!-- SECTION:latest_news -->
64
- - **Contextual Queries**: Support for more detailed context queries has been added, including reasons and evaluation ingestor reads, enhancing the understanding of code interactions.
65
- - **Graph Improvements**: The graph analysis capabilities have been expanded to follow cross-service links and implementors/overrides, providing a more comprehensive view of code dependencies.
64
+ - **GitHub Sponsors**: Added support for GitHub Sponsors via the command line.
66
65
  <!-- /SECTION:latest_news -->
67
66
 
68
67
  See [NEWS.md](NEWS.md) for the full history.
@@ -83,15 +82,17 @@ Point Code-Graph-RAG at a repository and it reads every source file, extracts fu
83
82
 
84
83
  The system has two components:
85
84
 
86
- 1. **Multi-language parser.** A Tree-sitter based parser reads the codebase and ingests functions, classes, methods, modules, and their relationships into Memgraph under a single language-agnostic schema. Where a toolchain is available, compiler-grade frontends layer exact facts on top (libclang for C/C++, `go/types` for Go, and opt-in Roslyn, `javac` and Jedi for C#, Java and Python), and [dynamic tracing](docs/guide/dynamic-tracing.md) merges calls observed at runtime. Tree-sitter stays the backbone: a trace only sees code that ran, and a compiler frontend only covers what its toolchain can build.
85
+ 1. **Multi-language parser.** A Tree-sitter based parser reads the codebase and ingests functions, classes, methods, modules, and their relationships into the graph under a single language-agnostic schema. Where a toolchain is available, compiler-grade frontends layer exact facts on top (libclang for C/C++, `go/types` for Go, and opt-in Roslyn, `javac` and Jedi for C#, Java and Python), and [dynamic tracing](docs/guide/dynamic-tracing.md) merges calls observed at runtime. Tree-sitter stays the backbone: a trace only sees code that ran, and a compiler frontend only covers what its toolchain can build.
87
86
  2. **RAG system** (`codebase_rag/`). An interactive CLI that turns natural language into Cypher queries, retrieves matching code, and drives AI-powered editing and optimisation.
88
87
 
89
88
  ```
90
- Source Code -> Tree-sitter Parser -> AST Analysis -> Memgraph Knowledge Graph
89
+ Source Code -> Tree-sitter Parser -> AST Analysis -> Knowledge Graph
91
90
  |
92
91
  User Query -> AI Model (Cypher Gen) -> Cypher Query -> Graph Results -> Response
93
92
  ```
94
93
 
94
+ The graph is stored in an embedded SQLite file by default. Memgraph and Neo4j are opt-in backends that run the same Cypher; [Graph Backends](docs/architecture/embedded-graph.md) compares them.
95
+
95
96
  See the [Architecture Overview](docs/architecture/overview.md) and [Graph Schema](docs/architecture/graph-schema.md) for the full picture.
96
97
 
97
98
  ## Supported Languages
@@ -137,7 +138,7 @@ uv tool install "code-graph-rag[treesitter-full,ast-grep,semantic] @ git+https:/
137
138
 
138
139
  To upgrade an existing install, run `uv tool upgrade code-graph-rag` (with pipx, `pipx upgrade code-graph-rag`, or `pipx reinstall code-graph-rag` for a git install). [Upgrade](docs/getting-started/installation.md#upgrade) covers the other install methods.
139
140
 
140
- You also need Python 3.12+, Docker (for Memgraph), `cmake`, and `ripgrep`. Full prerequisites, source installs, and environment setup are in the [Installation](docs/getting-started/installation.md) guide.
141
+ You also need Python 3.12+ and `ripgrep`. The graph lives in an embedded SQLite file by default, so there is no database server to run: no Docker and no `cmake`. Memgraph and Neo4j remain available as opt-in backends ([Graph Backends](docs/architecture/embedded-graph.md)). Full prerequisites, source installs, and environment setup are in the [Installation](docs/getting-started/installation.md) guide.
141
142
 
142
143
  > [!NOTE]
143
144
  > The wheel is pure Python (`py3-none-any`), so it installs on any platform with Python 3.12 or newer. Older system interpreters (Debian Bookworm ships 3.11) need the interpreter pinned explicitly; see [Installation](docs/getting-started/installation.md#older-system-interpreters) for the commands.
@@ -145,14 +146,16 @@ You also need Python 3.12+, Docker (for Memgraph), `cmake`, and `ripgrep`. Full
145
146
  ## Quick Start
146
147
 
147
148
  ```bash
148
- # Start the packaged Memgraph + Qdrant stack (no compose file needed)
149
- cgr daemon up
150
-
151
149
  # Parse a repository into the graph, then query it
152
150
  cgr start --repo-path /path/to/repo --update-graph
153
151
  cgr start --repo-path /path/to/repo
154
152
  ```
155
153
 
154
+ The graph is written to `~/.cgr/graph.sqlite` (set `SQLITE_GRAPH_PATH` to move it).
155
+ To use Memgraph instead, install the driver with the `memgraph` extra, set
156
+ `GRAPH_BACKEND=memgraph`, and start the packaged Memgraph + Qdrant stack with
157
+ `cgr daemon up`.
158
+
156
159
  Repeat the first command for each repository you want indexed; the graph is
157
160
  shared, and syncing one project leaves the others alone. To start over from an
158
161
  empty graph, add `--clean` — it deletes **every** project in the shared graph,
@@ -188,6 +191,7 @@ Code-Graph-RAG runs as an [MCP](https://modelcontextprotocol.io) server so Claud
188
191
  **Architecture**
189
192
  - [Overview](docs/architecture/overview.md)
190
193
  - [Graph Schema](docs/architecture/graph-schema.md)
194
+ - [Graph Backends](docs/architecture/embedded-graph.md)
191
195
  - [Language Support](docs/architecture/language-support.md)
192
196
  - [Data-Flow Edges](docs/architecture/data-flow-edges.md)
193
197
 
@@ -222,6 +226,8 @@ Please see [CONTRIBUTING.md](CONTRIBUTING.md) for contribution guidelines. Good
222
226
 
223
227
  For issues or questions, check the [Troubleshooting](docs/advanced/troubleshooting.md) guide first, then open an issue.
224
228
 
229
+ If cgr is useful to you, please consider pledging support on [GitHub Sponsors](https://github.com/sponsors/vitali87). cgr links the page under `cgr --version` and, in a terminal, after most commands finish; set `CGR_SPONSOR_PLEDGE=false` to hide that line.
230
+
225
231
  ## License
226
232
 
227
233
  MIT. See [LICENSE](LICENSE).
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: code-graph-rag
3
- Version: 0.1.90
3
+ Version: 0.2.10
4
4
  Summary: The ultimate RAG for your monorepo. Query, understand, and edit multi-language codebases with the power of AI and knowledge graphs
5
5
  License-Expression: MIT
6
6
  Keywords: rag,retrieval-augmented-generation,knowledge-graph,code-analysis,tree-sitter,mcp,mcp-server,llm,graph-database,semantic-search,codebase,memgraph,developer-tools,monorepo
@@ -19,10 +19,9 @@ Requires-Python: >=3.12
19
19
  Description-Content-Type: text/markdown
20
20
  License-File: LICENSE
21
21
  Requires-Dist: loguru>=0.7.3
22
- Requires-Dist: mcp<2,>=1.28.1
22
+ Requires-Dist: mcp<2,>=1.30.0
23
23
  Requires-Dist: pydantic-ai-slim[anthropic,google,openai]>=2.0.0
24
24
  Requires-Dist: pydantic-settings>=2.12.0
25
- Requires-Dist: pymgclient>=1.6.0
26
25
  Requires-Dist: python-dotenv>=1.2.1
27
26
  Requires-Dist: tiktoken>=0.12.0
28
27
  Requires-Dist: tomli-w>=1.2.0
@@ -39,6 +38,8 @@ Requires-Dist: defusedxml>=0.7.1
39
38
  Requires-Dist: huggingface-hub[hf-xet]>=1.7.2
40
39
  Requires-Dist: pathspec>=1.0.4
41
40
  Requires-Dist: pygments>=2.20.0
41
+ Requires-Dist: regex>=2024.11.6
42
+ Requires-Dist: cgr-graph-rs<0.2,>=0.1.0; platform_python_implementation == "CPython" and ((sys_platform == "linux" and (platform_machine == "x86_64" or platform_machine == "aarch64")) or sys_platform == "darwin" or (sys_platform == "win32" and platform_machine == "AMD64"))
42
43
  Provides-Extra: test
43
44
  Requires-Dist: jedi>=0.19; extra == "test"
44
45
  Requires-Dist: pytest>=8.4.1; extra == "test"
@@ -50,8 +51,12 @@ Requires-Dist: libclang>=18.1.1; extra == "test"
50
51
  Requires-Dist: filelock>=3.12; extra == "test"
51
52
  Requires-Dist: ast-grep-py>=0.44.0; extra == "test"
52
53
  Requires-Dist: pyyaml>=6.0; extra == "test"
54
+ Requires-Dist: pymgclient>=1.6.0; extra == "test"
55
+ Requires-Dist: sqlite-vec>=0.1.9; extra == "test"
53
56
  Provides-Extra: cpp
54
57
  Requires-Dist: libclang>=18.1.1; extra == "cpp"
58
+ Provides-Extra: memgraph
59
+ Requires-Dist: pymgclient>=1.6.0; extra == "memgraph"
55
60
  Provides-Extra: neo4j
56
61
  Requires-Dist: neo4j>=5.28.1; extra == "neo4j"
57
62
  Provides-Extra: treesitter-full
@@ -77,6 +82,8 @@ Requires-Dist: torch>=2.6.0; extra == "semantic"
77
82
  Requires-Dist: transformers>=5.0.0; extra == "semantic"
78
83
  Provides-Extra: milvus
79
84
  Requires-Dist: pymilvus[milvus-lite]>=3.0.0; extra == "milvus"
85
+ Provides-Extra: sqlite-vec
86
+ Requires-Dist: sqlite-vec>=0.1.9; extra == "sqlite-vec"
80
87
  Provides-Extra: ast-grep
81
88
  Requires-Dist: ast-grep-py>=0.44.0; extra == "ast-grep"
82
89
  Requires-Dist: pyyaml>=6.0; extra == "ast-grep"
@@ -86,7 +93,7 @@ Dynamic: license-file
86
93
 
87
94
  # Code-Graph-RAG
88
95
 
89
- Code-Graph-RAG parses a multi-language codebase with Tree-sitter, sharpened by compiler-grade frontends and runtime traces where available, builds a knowledge graph of its structure in Memgraph, and lets you query, edit, and optimise that code in plain English. It works across a monorepo of mixed languages under one unified graph schema.
96
+ Code-Graph-RAG parses a multi-language codebase with Tree-sitter, sharpened by compiler-grade frontends and runtime traces where available, builds a knowledge graph of its structure in an embedded graph database that needs no server, and lets you query, edit, and optimise that code in plain English. It works across a monorepo of mixed languages under one unified graph schema.
90
97
 
91
98
  ## What It Does
92
99
 
@@ -131,7 +138,9 @@ pip install 'code-graph-rag[semantic]'
131
138
  Qdrant is the default vector store for semantic search. To use Milvus Lite,
132
139
  install `code-graph-rag[semantic,milvus]`, then set
133
140
  `CGR_VECTOR_STORE_BACKEND=milvus` and `MILVUS_URI=./.milvus_code_embeddings.db`
134
- before indexing.
141
+ before indexing. To keep the vectors in a SQLite file beside the embedded graph
142
+ (`~/.cgr/vectors.sqlite`, no server), install `code-graph-rag[semantic,sqlite-vec]`
143
+ and set `CGR_VECTOR_STORE_BACKEND=sqlite`.
135
144
 
136
145
  To compute embeddings on an OpenAI-compatible endpoint (OpenAI, Ollama, vLLM)
137
146
  instead of locally, set `CGR_EMBEDDING_PROVIDER=openai` with
@@ -166,14 +175,22 @@ for git installs and the other methods.
166
175
  ### Prerequisites
167
176
 
168
177
  - Python 3.12+
169
- - Docker (for Memgraph)
170
- - `cmake` (for building pymgclient)
171
178
  - `ripgrep` (`rg`) (for shell command text searching)
179
+ - Only for the optional Memgraph backend: Docker, and `cmake` where no
180
+ `pymgclient` wheel fits your platform
181
+
182
+ The knowledge graph is an embedded SQLite file (`~/.cgr/graph.sqlite`), so there
183
+ is no database server to run. Memgraph and Neo4j remain available as opt-in
184
+ backends; see [Graph Backends](https://docs.code-graph-rag.com/architecture/embedded-graph/).
172
185
 
173
186
  The wheel is pure Python (`py3-none-any`), so it installs on any platform with
174
- Python 3.12 or newer. Some distributions ship an older interpreter (Debian
175
- Bookworm, and so Raspberry Pi OS Bookworm, ships 3.11), which also explains the
176
- failed piwheels Bookworm build. On those systems, see the [installation
187
+ Python 3.12 or newer. On Linux (x86_64, aarch64), macOS and Windows x64 it also
188
+ pulls in `cgr-graph-rs`, a native extension that speeds up the embedded graph;
189
+ elsewhere the same engine runs in pure Python.
190
+
191
+ Some distributions ship an older interpreter (Debian Bookworm, and so Raspberry
192
+ Pi OS Bookworm, ships 3.11), which also explains the failed piwheels Bookworm
193
+ build. On those systems, see the [installation
177
194
  guide](https://github.com/vitali87/code-graph-rag/blob/main/docs/getting-started/installation.md#older-system-interpreters)
178
195
  for the available interpreter-pinning alternatives.
179
196
 
@@ -181,14 +198,17 @@ for the available interpreter-pinning alternatives.
181
198
 
182
199
  The package installs a `cgr` command.
183
200
 
184
- **Start Memgraph, parse a repo, and query it:**
201
+ **Parse a repo, then query it:**
185
202
 
186
203
  ```bash
187
- cgr daemon up # start Memgraph + Qdrant
188
- cgr start --repo-path ./my-project \
189
- --update-graph --clean # parse & launch interactive chat
204
+ cgr start --repo-path ./my-project --update-graph # parse into the graph
205
+ cgr start --repo-path ./my-project # launch the interactive chat
190
206
  ```
191
207
 
208
+ The graph is written to `~/.cgr/graph.sqlite`. To use Memgraph instead, install
209
+ `code-graph-rag[memgraph]`, set `GRAPH_BACKEND=memgraph`, and start the packaged
210
+ Memgraph + Qdrant stack with `cgr daemon up`.
211
+
192
212
  **Index to protobuf for offline use:**
193
213
 
194
214
  ```bash
@@ -295,7 +315,11 @@ for fn in functions[:5]:
295
315
  print(f"{fn.properties['name']}: {len(rels)} relationships")
296
316
  ```
297
317
 
298
- ### Query Memgraph with Cypher
318
+ ### Query the graph with Cypher
319
+
320
+ `MemgraphIngestor` keeps its original name but works with whichever backend
321
+ `GRAPH_BACKEND` selects. On the default embedded graph, `host` and `port` are
322
+ not used.
299
323
 
300
324
  ```python
301
325
  from cgr import MemgraphIngestor
@@ -348,8 +372,10 @@ Configure via `.env` or environment variables:
348
372
 
349
373
  | Variable | Default | Description |
350
374
  |----------|---------|-------------|
351
- | `MEMGRAPH_HOST` | `localhost` | Memgraph hostname |
352
- | `MEMGRAPH_PORT` | `7687` | Memgraph port |
375
+ | `GRAPH_BACKEND` | `sqlite` | Graph engine: `sqlite` (embedded), `memgraph`, or `neo4j` |
376
+ | `SQLITE_GRAPH_PATH` | `~/.cgr/graph.sqlite` | Embedded graph file |
377
+ | `MEMGRAPH_HOST` | `localhost` | Memgraph hostname (with `GRAPH_BACKEND=memgraph`) |
378
+ | `MEMGRAPH_PORT` | `7687` | Memgraph port (with `GRAPH_BACKEND=memgraph`) |
353
379
  | `ORCHESTRATOR_PROVIDER` | | Provider: `google`, `openai`, `anthropic`, `azure`, `ollama`, `minimax`, `litellm_proxy` |
354
380
  | `ORCHESTRATOR_MODEL` | | Model ID (e.g. `gpt-5.6-terra`, `gemini-3.6-flash`, `claude-sonnet-5`, `qwen2.5-coder`) |
355
381
  | `ORCHESTRATOR_API_KEY` | | API key for the provider (not needed for `ollama`) |
@@ -46,6 +46,7 @@ codebase_rag/interface_skip.py
46
46
  codebase_rag/language_spec.py
47
47
  codebase_rag/logs.py
48
48
  codebase_rag/main.py
49
+ codebase_rag/mgclient_compat.py
49
50
  codebase_rag/mgclient_probe.py
50
51
  codebase_rag/models.py
51
52
  codebase_rag/parser_fingerprint.py
@@ -58,6 +59,7 @@ codebase_rag/schema_builder.py
58
59
  codebase_rag/schema_parse.py
59
60
  codebase_rag/schemas.py
60
61
  codebase_rag/sql_names.py
62
+ codebase_rag/sqlite_vectors.py
61
63
  codebase_rag/structural_check.py
62
64
  codebase_rag/structural_delta.py
63
65
  codebase_rag/sync_guard.py
@@ -137,6 +139,7 @@ codebase_rag/constants/core.py
137
139
  codebase_rag/constants/deadcode_roots.py
138
140
  codebase_rag/constants/deps.py
139
141
  codebase_rag/constants/duplicates.py
142
+ codebase_rag/constants/embedded_graph.py
140
143
  codebase_rag/constants/fqn_specs.py
141
144
  codebase_rag/constants/graph.py
142
145
  codebase_rag/constants/health.py
@@ -147,6 +150,7 @@ codebase_rag/constants/mcp.py
147
150
  codebase_rag/constants/notebook.py
148
151
  codebase_rag/constants/providers.py
149
152
  codebase_rag/constants/security.py
153
+ codebase_rag/constants/sqlite_vectors.py
150
154
  codebase_rag/constants/stdlib_types.py
151
155
  codebase_rag/constants/structural.py
152
156
  codebase_rag/constants/trace.py
@@ -158,10 +162,27 @@ codebase_rag/editing/imports.py
158
162
  codebase_rag/editing/occurrences.py
159
163
  codebase_rag/editing/patcher.py
160
164
  codebase_rag/editing/rename.py
165
+ codebase_rag/editing/signature_bind.py
161
166
  codebase_rag/editing/signature_contract.py
162
167
  codebase_rag/editing/signature_spec.py
163
168
  codebase_rag/editing/sites.py
164
169
  codebase_rag/editing/transaction.py
170
+ codebase_rag/embedded_graph/__init__.py
171
+ codebase_rag/embedded_graph/compiler.py
172
+ codebase_rag/embedded_graph/connection.py
173
+ codebase_rag/embedded_graph/cypher_ast.py
174
+ codebase_rag/embedded_graph/executor.py
175
+ codebase_rag/embedded_graph/expressions.py
176
+ codebase_rag/embedded_graph/extension.py
177
+ codebase_rag/embedded_graph/functions.py
178
+ codebase_rag/embedded_graph/lexer.py
179
+ codebase_rag/embedded_graph/limits.py
180
+ codebase_rag/embedded_graph/native.py
181
+ codebase_rag/embedded_graph/parser.py
182
+ codebase_rag/embedded_graph/procedures.py
183
+ codebase_rag/embedded_graph/sql.py
184
+ codebase_rag/embedded_graph/store.py
185
+ codebase_rag/embedded_graph/types.py
165
186
  codebase_rag/mcp/__init__.py
166
187
  codebase_rag/mcp/client.py
167
188
  codebase_rag/mcp/server.py
@@ -1,8 +1,7 @@
1
1
  loguru>=0.7.3
2
- mcp<2,>=1.28.1
2
+ mcp<2,>=1.30.0
3
3
  pydantic-ai-slim[anthropic,google,openai]>=2.0.0
4
4
  pydantic-settings>=2.12.0
5
- pymgclient>=1.6.0
6
5
  python-dotenv>=1.2.1
7
6
  tiktoken>=0.12.0
8
7
  tomli-w>=1.2.0
@@ -19,6 +18,10 @@ defusedxml>=0.7.1
19
18
  huggingface-hub[hf-xet]>=1.7.2
20
19
  pathspec>=1.0.4
21
20
  pygments>=2.20.0
21
+ regex>=2024.11.6
22
+
23
+ [:platform_python_implementation == "CPython" and ((sys_platform == "linux" and (platform_machine == "x86_64" or platform_machine == "aarch64")) or sys_platform == "darwin" or (sys_platform == "win32" and platform_machine == "AMD64"))]
24
+ cgr-graph-rs<0.2,>=0.1.0
22
25
 
23
26
  [ast-grep]
24
27
  ast-grep-py>=0.44.0
@@ -27,6 +30,9 @@ pyyaml>=6.0
27
30
  [cpp]
28
31
  libclang>=18.1.1
29
32
 
33
+ [memgraph]
34
+ pymgclient>=1.6.0
35
+
30
36
  [milvus]
31
37
  pymilvus[milvus-lite]>=3.0.0
32
38
 
@@ -41,6 +47,9 @@ qdrant-client>=1.9.0
41
47
  torch>=2.6.0
42
48
  transformers>=5.0.0
43
49
 
50
+ [sqlite-vec]
51
+ sqlite-vec>=0.1.9
52
+
44
53
  [test]
45
54
  jedi>=0.19
46
55
  pytest>=8.4.1
@@ -52,6 +61,8 @@ libclang>=18.1.1
52
61
  filelock>=3.12
53
62
  ast-grep-py>=0.44.0
54
63
  pyyaml>=6.0
64
+ pymgclient>=1.6.0
65
+ sqlite-vec>=0.1.9
55
66
 
56
67
  [treesitter-full]
57
68
  tree-sitter-python>=0.23.6