code-graph-rag 0.1.38__tar.gz → 0.2.0__tar.gz

{code_graph_rag-0.1.38/code_graph_rag.egg-info → code_graph_rag-0.2.0}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: code-graph-rag
-Version: 0.1.38
+Version: 0.2.0
 Summary: The ultimate RAG for your monorepo. Query, understand, and edit multi-language codebases with the power of AI and knowledge graphs
 License-Expression: MIT
 Keywords: rag,retrieval-augmented-generation,knowledge-graph,code-analysis,tree-sitter,mcp,mcp-server,llm,graph-database,semantic-search,codebase,memgraph,developer-tools,monorepo
@@ -19,10 +19,9 @@ Requires-Python: >=3.12
 Description-Content-Type: text/markdown
 License-File: LICENSE
 Requires-Dist: loguru>=0.7.3
-Requires-Dist: mcp>=1.28.1
+Requires-Dist: mcp<2,>=1.28.1
 Requires-Dist: pydantic-ai-slim[anthropic,google,openai]>=2.0.0
 Requires-Dist: pydantic-settings>=2.12.0
-Requires-Dist: pymgclient>=1.5.1
 Requires-Dist: python-dotenv>=1.2.1
 Requires-Dist: tiktoken>=0.12.0
 Requires-Dist: tomli-w>=1.2.0
@@ -39,6 +38,8 @@ Requires-Dist: defusedxml>=0.7.1
 Requires-Dist: huggingface-hub[hf-xet]>=1.7.2
 Requires-Dist: pathspec>=1.0.4
 Requires-Dist: pygments>=2.20.0
+Requires-Dist: regex>=2024.11.6
+Requires-Dist: cgr-graph-rs<0.2,>=0.1.0; platform_python_implementation == "CPython" and ((sys_platform == "linux" and (platform_machine == "x86_64" or platform_machine == "aarch64")) or sys_platform == "darwin" or (sys_platform == "win32" and platform_machine == "AMD64"))
 Provides-Extra: test
 Requires-Dist: jedi>=0.19; extra == "test"
 Requires-Dist: pytest>=8.4.1; extra == "test"
@@ -50,8 +51,12 @@ Requires-Dist: libclang>=18.1.1; extra == "test"
 Requires-Dist: filelock>=3.12; extra == "test"
 Requires-Dist: ast-grep-py>=0.44.0; extra == "test"
 Requires-Dist: pyyaml>=6.0; extra == "test"
+Requires-Dist: pymgclient>=1.6.0; extra == "test"
+Requires-Dist: sqlite-vec>=0.1.9; extra == "test"
 Provides-Extra: cpp
 Requires-Dist: libclang>=18.1.1; extra == "cpp"
+Provides-Extra: memgraph
+Requires-Dist: pymgclient>=1.6.0; extra == "memgraph"
 Provides-Extra: neo4j
 Requires-Dist: neo4j>=5.28.1; extra == "neo4j"
 Provides-Extra: treesitter-full
@@ -65,6 +70,7 @@ Requires-Dist: tree-sitter-java>=0.23.5; extra == "treesitter-full"
 Requires-Dist: tree-sitter-c>=0.24.1; extra == "treesitter-full"
 Requires-Dist: tree-sitter-cpp>=0.23.0; extra == "treesitter-full"
 Requires-Dist: tree-sitter-lua>=0.0.19; extra == "treesitter-full"
+Requires-Dist: tree-sitter-julia>=0.23.1; extra == "treesitter-full"
 Requires-Dist: tree-sitter-php>=0.24.1; extra == "treesitter-full"
 Requires-Dist: tree-sitter-c-sharp>=0.23.5; extra == "treesitter-full"
 Requires-Dist: tree-sitter-dart==0.1.0; extra == "treesitter-full"
@@ -76,6 +82,8 @@ Requires-Dist: torch>=2.6.0; extra == "semantic"
 Requires-Dist: transformers>=5.0.0; extra == "semantic"
 Provides-Extra: milvus
 Requires-Dist: pymilvus[milvus-lite]>=3.0.0; extra == "milvus"
+Provides-Extra: sqlite-vec
+Requires-Dist: sqlite-vec>=0.1.9; extra == "sqlite-vec"
 Provides-Extra: ast-grep
 Requires-Dist: ast-grep-py>=0.44.0; extra == "ast-grep"
 Requires-Dist: pyyaml>=6.0; extra == "ast-grep"
@@ -112,12 +120,15 @@ Python, TypeScript, TSX, JavaScript, Rust, Go, Java, C, C++, C#, PHP, Lua, and D
 pip install code-graph-rag
 ```
 
-With all Tree-sitter grammars (Python, JS, TS, Rust, Go, Java, Scala, C, C++, C#, PHP, Lua, Dart):
+With all Tree-sitter grammars (Python, JS, TS, Rust, Go, Java, Scala, C, C++, C#, PHP, Lua, Dart) and the ast-grep tier (Ruby, Kotlin, Swift, Elixir, Haskell, Solidity, Bash, Nix):
 
 ```bash
-pip install 'code-graph-rag[treesitter-full]'
+pip install 'code-graph-rag[treesitter-full,ast-grep]'
 ```
 
+Without `ast-grep`, files in the ast-grep tier's languages are indexed as bare `File`
+nodes, and a sync that meets them says so in a warning.
+
 With semantic code search (UniXcoder embeddings):
 
 ```bash
@@ -127,7 +138,9 @@ pip install 'code-graph-rag[semantic]'
 Qdrant is the default vector store for semantic search. To use Milvus Lite,
 install `code-graph-rag[semantic,milvus]`, then set
 `CGR_VECTOR_STORE_BACKEND=milvus` and `MILVUS_URI=./.milvus_code_embeddings.db`
-before indexing.
+before indexing. To keep the vectors in a SQLite file beside the embedded graph
+(`~/.cgr/vectors.sqlite`, no server), install `code-graph-rag[semantic,sqlite-vec]`
+and set `CGR_VECTOR_STORE_BACKEND=sqlite`.
 
 To compute embeddings on an OpenAI-compatible endpoint (OpenAI, Ollama, vLLM)
 instead of locally, set `CGR_EMBEDDING_PROVIDER=openai` with
@@ -145,7 +158,7 @@ ships immediately rather than waiting for the cadence.
 To run code newer than the latest release, install from git with uv:
 
 ```bash
-uv tool install "code-graph-rag[treesitter-full] @ git+https://github.com/vitali87/code-graph-rag@main"
+uv tool install "code-graph-rag[treesitter-full,ast-grep] @ git+https://github.com/vitali87/code-graph-rag@main"
 ```
 
 Use uv for this: it applies the project's `[tool.uv.sources]`, which build the C
@@ -154,7 +167,7 @@ and C++ grammars from forks that keep the declarations upstream drops after a
 installs the upstream grammars.
 
 To upgrade, rerun the install with `--upgrade` and the extras you chose, for
-example `pip install --upgrade 'code-graph-rag[treesitter-full]'`. With uv or pipx,
+example `pip install --upgrade 'code-graph-rag[treesitter-full,ast-grep]'`. With uv or pipx,
 run `uv tool upgrade code-graph-rag` or `pipx upgrade code-graph-rag` instead; see the
 [installation guide](https://github.com/vitali87/code-graph-rag/blob/main/docs/getting-started/installation.md#upgrade)
 for git installs and the other methods.
@@ -308,11 +321,13 @@ with MemgraphIngestor(host="localhost", port=7687) as db:
 import asyncio
 from cgr import CypherGenerator
 
+
 async def main():
     gen = CypherGenerator()
     cypher = await gen.generate("Find all classes that inherit from BaseModel")
     print(cypher)
 
+
 asyncio.run(main())
 ```
 

{code_graph_rag-0.1.38 → code_graph_rag-0.2.0}/PYPI_README.md

@@ -27,12 +27,15 @@ Python, TypeScript, TSX, JavaScript, Rust, Go, Java, C, C++, C#, PHP, Lua, and D
 pip install code-graph-rag
 ```
 
-With all Tree-sitter grammars (Python, JS, TS, Rust, Go, Java, Scala, C, C++, C#, PHP, Lua, Dart):
+With all Tree-sitter grammars (Python, JS, TS, Rust, Go, Java, Scala, C, C++, C#, PHP, Lua, Dart) and the ast-grep tier (Ruby, Kotlin, Swift, Elixir, Haskell, Solidity, Bash, Nix):
 
 ```bash
-pip install 'code-graph-rag[treesitter-full]'
+pip install 'code-graph-rag[treesitter-full,ast-grep]'
 ```
 
+Without `ast-grep`, files in the ast-grep tier's languages are indexed as bare `File`
+nodes, and a sync that meets them says so in a warning.
+
 With semantic code search (UniXcoder embeddings):
 
 ```bash
@@ -42,7 +45,9 @@ pip install 'code-graph-rag[semantic]'
 Qdrant is the default vector store for semantic search. To use Milvus Lite,
 install `code-graph-rag[semantic,milvus]`, then set
 `CGR_VECTOR_STORE_BACKEND=milvus` and `MILVUS_URI=./.milvus_code_embeddings.db`
-before indexing.
+before indexing. To keep the vectors in a SQLite file beside the embedded graph
+(`~/.cgr/vectors.sqlite`, no server), install `code-graph-rag[semantic,sqlite-vec]`
+and set `CGR_VECTOR_STORE_BACKEND=sqlite`.
 
 To compute embeddings on an OpenAI-compatible endpoint (OpenAI, Ollama, vLLM)
 instead of locally, set `CGR_EMBEDDING_PROVIDER=openai` with
@@ -60,7 +65,7 @@ ships immediately rather than waiting for the cadence.
 To run code newer than the latest release, install from git with uv:
 
 ```bash
-uv tool install "code-graph-rag[treesitter-full] @ git+https://github.com/vitali87/code-graph-rag@main"
+uv tool install "code-graph-rag[treesitter-full,ast-grep] @ git+https://github.com/vitali87/code-graph-rag@main"
 ```
 
 Use uv for this: it applies the project's `[tool.uv.sources]`, which build the C
@@ -69,7 +74,7 @@ and C++ grammars from forks that keep the declarations upstream drops after a
 installs the upstream grammars.
 
 To upgrade, rerun the install with `--upgrade` and the extras you chose, for
-example `pip install --upgrade 'code-graph-rag[treesitter-full]'`. With uv or pipx,
+example `pip install --upgrade 'code-graph-rag[treesitter-full,ast-grep]'`. With uv or pipx,
 run `uv tool upgrade code-graph-rag` or `pipx upgrade code-graph-rag` instead; see the
 [installation guide](https://github.com/vitali87/code-graph-rag/blob/main/docs/getting-started/installation.md#upgrade)
 for git installs and the other methods.
@@ -223,11 +228,13 @@ with MemgraphIngestor(host="localhost", port=7687) as db:
 import asyncio
 from cgr import CypherGenerator
 
+
 async def main():
     gen = CypherGenerator()
     cypher = await gen.generate("Find all classes that inherit from BaseModel")
     print(cypher)
 
+
 asyncio.run(main())
 ```
 

{code_graph_rag-0.1.38 → code_graph_rag-0.2.0}/README.md

@@ -61,7 +61,8 @@ Code-Graph-RAG parses a multi-language codebase with Tree-sitter, sharpened by c
 ## Latest News 🔥
 
 <!-- SECTION:latest_news -->
-- **Incremental Indexing**: Improved handling of same-stem sibling matches and skipped EXPOSES cleanups during incremental updates.
+- **Contextual Queries**: Support for more detailed context queries has been added, including reasons and evaluation ingestor reads, enhancing the understanding of code interactions.
+- **Graph Improvements**: The graph analysis capabilities have been expanded to follow cross-service links and implementors/overrides, providing a more comprehensive view of code dependencies.
 <!-- /SECTION:latest_news -->
 
 See [NEWS.md](NEWS.md) for the full history.
@@ -95,18 +96,18 @@ See the [Architecture Overview](docs/architecture/overview.md) and [Graph Schema
 
 ## Supported Languages
 
-Python, TypeScript, TSX, JavaScript, Rust, Go, Java, C, C++, C#, PHP, Lua, and Dart are fully supported. Scala is in development, and Ruby, Kotlin, Swift, Elixir, Haskell, Solidity, Bash, and Nix have structural support (modules, functions, classes where the language has them, and imports) through the pluggable ast-grep tier. See the [Language Support](docs/architecture/language-support.md) matrix for per-language capabilities.
+Python, TypeScript, TSX, JavaScript, Rust, Go, Java, C, C++, C#, PHP, Lua, Dart, and Julia are fully supported. Scala is in development, and Ruby, Kotlin, Swift, Elixir, Haskell, Solidity, Bash, and Nix have structural support (modules, functions, classes where the language has them, and imports) through the pluggable ast-grep tier. See the [Language Support](docs/architecture/language-support.md) matrix for per-language capabilities.
 
 ## Installation
 
-`cgr` is published to PyPI. Install it system-wide with the `treesitter-full` (all languages) and `semantic` (vector search) extras:
+`cgr` is published to PyPI. Install it system-wide with the `treesitter-full` (tree-sitter grammars), `ast-grep` (Ruby, Kotlin, Swift, Elixir, Haskell, Solidity, Bash, Nix) and `semantic` (vector search) extras:
 
 ```bash
 # with uv (recommended)
-uv tool install "code-graph-rag[treesitter-full,semantic]"
+uv tool install "code-graph-rag[treesitter-full,ast-grep,semantic]"
 
 # or with pipx
-pipx install "code-graph-rag[treesitter-full,semantic]"
+pipx install "code-graph-rag[treesitter-full,ast-grep,semantic]"
 ```
 
 ### Which version am I getting?
@@ -131,12 +132,12 @@ addressable; binaries and PyPI uploads follow the cadence above.
 To run code newer than the latest release, install from git:
 
 ```bash
-uv tool install "code-graph-rag[treesitter-full,semantic] @ git+https://github.com/vitali87/code-graph-rag@main"
+uv tool install "code-graph-rag[treesitter-full,ast-grep,semantic] @ git+https://github.com/vitali87/code-graph-rag@main"
 ```
 
 To upgrade an existing install, run `uv tool upgrade code-graph-rag` (with pipx, `pipx upgrade code-graph-rag`, or `pipx reinstall code-graph-rag` for a git install). [Upgrade](docs/getting-started/installation.md#upgrade) covers the other install methods.
 
-You also need Python 3.12+, Docker (for Memgraph), `cmake`, and `ripgrep`. Full prerequisites, source installs, and environment setup are in the [Installation](docs/getting-started/installation.md) guide.
+You also need Python 3.12+ and `ripgrep`. The graph lives in an embedded SQLite file by default, so there is no database server to run: no Docker and no `cmake`. Memgraph and Neo4j remain available as opt-in backends ([Graph Backends](docs/architecture/embedded-graph.md)). Full prerequisites, source installs, and environment setup are in the [Installation](docs/getting-started/installation.md) guide.
 
 > [!NOTE]
 > The wheel is pure Python (`py3-none-any`), so it installs on any platform with Python 3.12 or newer. Older system interpreters (Debian Bookworm ships 3.11) need the interpreter pinned explicitly; see [Installation](docs/getting-started/installation.md#older-system-interpreters) for the commands.
@@ -144,20 +145,24 @@ You also need Python 3.12+, Docker (for Memgraph), `cmake`, and `ripgrep`. Full
 ## Quick Start
 
 ```bash
-# Start the packaged Memgraph + Qdrant stack (no compose file needed)
-cgr daemon up
-
 # Parse a repository into the graph, then query it
 cgr start --repo-path /path/to/repo --update-graph
 cgr start --repo-path /path/to/repo
 ```
 
+The graph is written to `~/.cgr/graph.sqlite` (set `SQLITE_GRAPH_PATH` to move it).
+To use Memgraph instead, install the driver with the `memgraph` extra, set
+`GRAPH_BACKEND=memgraph`, and start the packaged Memgraph + Qdrant stack with
+`cgr daemon up`.
+
 Repeat the first command for each repository you want indexed; the graph is
 shared, and syncing one project leaves the others alone. To start over from an
 empty graph, add `--clean` — it deletes **every** project in the shared graph,
 not just this one, and asks for confirmation first when other
 projects would be destroyed.
 
+A default index leaves out the opt-in [capture groups](docs/architecture/graph-schema.md#capture-groups); add them with `--capture` or `CGR_CAPTURE`.
+
 The [Quick Start](docs/getting-started/quickstart.md) guide walks through parsing, querying, and exporting in five minutes.
 
 ## MCP Server

{code_graph_rag-0.1.38 → code_graph_rag-0.2.0/code_graph_rag.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: code-graph-rag
-Version: 0.1.38
+Version: 0.2.0
 Summary: The ultimate RAG for your monorepo. Query, understand, and edit multi-language codebases with the power of AI and knowledge graphs
 License-Expression: MIT
 Keywords: rag,retrieval-augmented-generation,knowledge-graph,code-analysis,tree-sitter,mcp,mcp-server,llm,graph-database,semantic-search,codebase,memgraph,developer-tools,monorepo
@@ -19,10 +19,9 @@ Requires-Python: >=3.12
 Description-Content-Type: text/markdown
 License-File: LICENSE
 Requires-Dist: loguru>=0.7.3
-Requires-Dist: mcp>=1.28.1
+Requires-Dist: mcp<2,>=1.28.1
 Requires-Dist: pydantic-ai-slim[anthropic,google,openai]>=2.0.0
 Requires-Dist: pydantic-settings>=2.12.0
-Requires-Dist: pymgclient>=1.5.1
 Requires-Dist: python-dotenv>=1.2.1
 Requires-Dist: tiktoken>=0.12.0
 Requires-Dist: tomli-w>=1.2.0
@@ -39,6 +38,8 @@ Requires-Dist: defusedxml>=0.7.1
 Requires-Dist: huggingface-hub[hf-xet]>=1.7.2
 Requires-Dist: pathspec>=1.0.4
 Requires-Dist: pygments>=2.20.0
+Requires-Dist: regex>=2024.11.6
+Requires-Dist: cgr-graph-rs<0.2,>=0.1.0; platform_python_implementation == "CPython" and ((sys_platform == "linux" and (platform_machine == "x86_64" or platform_machine == "aarch64")) or sys_platform == "darwin" or (sys_platform == "win32" and platform_machine == "AMD64"))
 Provides-Extra: test
 Requires-Dist: jedi>=0.19; extra == "test"
 Requires-Dist: pytest>=8.4.1; extra == "test"
@@ -50,8 +51,12 @@ Requires-Dist: libclang>=18.1.1; extra == "test"
 Requires-Dist: filelock>=3.12; extra == "test"
 Requires-Dist: ast-grep-py>=0.44.0; extra == "test"
 Requires-Dist: pyyaml>=6.0; extra == "test"
+Requires-Dist: pymgclient>=1.6.0; extra == "test"
+Requires-Dist: sqlite-vec>=0.1.9; extra == "test"
 Provides-Extra: cpp
 Requires-Dist: libclang>=18.1.1; extra == "cpp"
+Provides-Extra: memgraph
+Requires-Dist: pymgclient>=1.6.0; extra == "memgraph"
 Provides-Extra: neo4j
 Requires-Dist: neo4j>=5.28.1; extra == "neo4j"
 Provides-Extra: treesitter-full
@@ -65,6 +70,7 @@ Requires-Dist: tree-sitter-java>=0.23.5; extra == "treesitter-full"
 Requires-Dist: tree-sitter-c>=0.24.1; extra == "treesitter-full"
 Requires-Dist: tree-sitter-cpp>=0.23.0; extra == "treesitter-full"
 Requires-Dist: tree-sitter-lua>=0.0.19; extra == "treesitter-full"
+Requires-Dist: tree-sitter-julia>=0.23.1; extra == "treesitter-full"
 Requires-Dist: tree-sitter-php>=0.24.1; extra == "treesitter-full"
 Requires-Dist: tree-sitter-c-sharp>=0.23.5; extra == "treesitter-full"
 Requires-Dist: tree-sitter-dart==0.1.0; extra == "treesitter-full"
@@ -76,6 +82,8 @@ Requires-Dist: torch>=2.6.0; extra == "semantic"
 Requires-Dist: transformers>=5.0.0; extra == "semantic"
 Provides-Extra: milvus
 Requires-Dist: pymilvus[milvus-lite]>=3.0.0; extra == "milvus"
+Provides-Extra: sqlite-vec
+Requires-Dist: sqlite-vec>=0.1.9; extra == "sqlite-vec"
 Provides-Extra: ast-grep
 Requires-Dist: ast-grep-py>=0.44.0; extra == "ast-grep"
 Requires-Dist: pyyaml>=6.0; extra == "ast-grep"
@@ -112,12 +120,15 @@ Python, TypeScript, TSX, JavaScript, Rust, Go, Java, C, C++, C#, PHP, Lua, and D
 pip install code-graph-rag
 ```
 
-With all Tree-sitter grammars (Python, JS, TS, Rust, Go, Java, Scala, C, C++, C#, PHP, Lua, Dart):
+With all Tree-sitter grammars (Python, JS, TS, Rust, Go, Java, Scala, C, C++, C#, PHP, Lua, Dart) and the ast-grep tier (Ruby, Kotlin, Swift, Elixir, Haskell, Solidity, Bash, Nix):
 
 ```bash
-pip install 'code-graph-rag[treesitter-full]'
+pip install 'code-graph-rag[treesitter-full,ast-grep]'
 ```
 
+Without `ast-grep`, files in the ast-grep tier's languages are indexed as bare `File`
+nodes, and a sync that meets them says so in a warning.
+
 With semantic code search (UniXcoder embeddings):
 
 ```bash
@@ -127,7 +138,9 @@ pip install 'code-graph-rag[semantic]'
 Qdrant is the default vector store for semantic search. To use Milvus Lite,
 install `code-graph-rag[semantic,milvus]`, then set
 `CGR_VECTOR_STORE_BACKEND=milvus` and `MILVUS_URI=./.milvus_code_embeddings.db`
-before indexing.
+before indexing. To keep the vectors in a SQLite file beside the embedded graph
+(`~/.cgr/vectors.sqlite`, no server), install `code-graph-rag[semantic,sqlite-vec]`
+and set `CGR_VECTOR_STORE_BACKEND=sqlite`.
 
 To compute embeddings on an OpenAI-compatible endpoint (OpenAI, Ollama, vLLM)
 instead of locally, set `CGR_EMBEDDING_PROVIDER=openai` with
@@ -145,7 +158,7 @@ ships immediately rather than waiting for the cadence.
 To run code newer than the latest release, install from git with uv:
 
 ```bash
-uv tool install "code-graph-rag[treesitter-full] @ git+https://github.com/vitali87/code-graph-rag@main"
+uv tool install "code-graph-rag[treesitter-full,ast-grep] @ git+https://github.com/vitali87/code-graph-rag@main"
 ```
 
 Use uv for this: it applies the project's `[tool.uv.sources]`, which build the C
@@ -154,7 +167,7 @@ and C++ grammars from forks that keep the declarations upstream drops after a
 installs the upstream grammars.
 
 To upgrade, rerun the install with `--upgrade` and the extras you chose, for
-example `pip install --upgrade 'code-graph-rag[treesitter-full]'`. With uv or pipx,
+example `pip install --upgrade 'code-graph-rag[treesitter-full,ast-grep]'`. With uv or pipx,
 run `uv tool upgrade code-graph-rag` or `pipx upgrade code-graph-rag` instead; see the
 [installation guide](https://github.com/vitali87/code-graph-rag/blob/main/docs/getting-started/installation.md#upgrade)
 for git installs and the other methods.
@@ -308,11 +321,13 @@ with MemgraphIngestor(host="localhost", port=7687) as db:
 import asyncio
 from cgr import CypherGenerator
 
+
 async def main():
     gen = CypherGenerator()
     cypher = await gen.generate("Find all classes that inherit from BaseModel")
     print(cypher)
 
+
 asyncio.run(main())
 ```
 

{code_graph_rag-0.1.38 → code_graph_rag-0.2.0}/code_graph_rag.egg-info/SOURCES.txt

@@ -13,13 +13,15 @@ codebase_rag/__init__.py
 codebase_rag/_cli_env.py
 codebase_rag/ast_cache.py
 codebase_rag/capture.py
-codebase_rag/cgr_state.py
+codebase_rag/check_isolation.py
+codebase_rag/checkout_state.py
 codebase_rag/cli.py
 codebase_rag/cli_help.py
 codebase_rag/cli_runtime.py
 codebase_rag/config.py
 codebase_rag/console_marks.py
 codebase_rag/context_pruning.py
+codebase_rag/context_slice.py
 codebase_rag/crash_correlation.py
 codebase_rag/cypher_queries.py
 codebase_rag/dead_code.py
@@ -40,26 +42,35 @@ codebase_rag/graph_dialects.py
 codebase_rag/graph_loader.py
 codebase_rag/graph_query.py
 codebase_rag/graph_updater.py
+codebase_rag/interface_skip.py
 codebase_rag/language_spec.py
 codebase_rag/logs.py
 codebase_rag/main.py
+codebase_rag/mgclient_compat.py
+codebase_rag/mgclient_probe.py
 codebase_rag/models.py
 codebase_rag/parser_fingerprint.py
 codebase_rag/parser_loader.py
 codebase_rag/path_filters.py
+codebase_rag/project_selection.py
 codebase_rag/prompts.py
 codebase_rag/readme_sections.py
 codebase_rag/schema_builder.py
 codebase_rag/schema_parse.py
 codebase_rag/schemas.py
 codebase_rag/sql_names.py
+codebase_rag/sqlite_vectors.py
 codebase_rag/structural_check.py
 codebase_rag/structural_delta.py
+codebase_rag/sync_guard.py
+codebase_rag/sync_lock.py
 codebase_rag/taint.py
 codebase_rag/tool_errors.py
+codebase_rag/tree_sitter_point.py
 codebase_rag/types_defs.py
 codebase_rag/unixcoder.py
 codebase_rag/vector_store.py
+codebase_rag/watch.py
 codebase_rag/analyzers/__init__.py
 codebase_rag/analyzers/ast_grep_analyzer.py
 codebase_rag/analyzers/ast_grep_rules/patterns/c.yaml
@@ -114,6 +125,7 @@ codebase_rag/constants/ast_dart.py
 codebase_rag/constants/ast_go.py
 codebase_rag/constants/ast_java.py
 codebase_rag/constants/ast_js.py
+codebase_rag/constants/ast_julia.py
 codebase_rag/constants/ast_lua.py
 codebase_rag/constants/ast_nodes.py
 codebase_rag/constants/ast_php.py
@@ -127,24 +139,49 @@ codebase_rag/constants/core.py
 codebase_rag/constants/deadcode_roots.py
 codebase_rag/constants/deps.py
 codebase_rag/constants/duplicates.py
+codebase_rag/constants/embedded_graph.py
 codebase_rag/constants/fqn_specs.py
 codebase_rag/constants/graph.py
 codebase_rag/constants/health.py
+codebase_rag/constants/interface.py
 codebase_rag/constants/lang_tooling.py
 codebase_rag/constants/languages.py
 codebase_rag/constants/mcp.py
+codebase_rag/constants/notebook.py
 codebase_rag/constants/providers.py
 codebase_rag/constants/security.py
+codebase_rag/constants/sqlite_vectors.py
 codebase_rag/constants/stdlib_types.py
 codebase_rag/constants/structural.py
 codebase_rag/constants/trace.py
 codebase_rag/editing/__init__.py
 codebase_rag/editing/cli.py
 codebase_rag/editing/contract.py
+codebase_rag/editing/import_paths.py
 codebase_rag/editing/imports.py
+codebase_rag/editing/occurrences.py
 codebase_rag/editing/patcher.py
 codebase_rag/editing/rename.py
+codebase_rag/editing/signature_contract.py
+codebase_rag/editing/signature_spec.py
+codebase_rag/editing/sites.py
 codebase_rag/editing/transaction.py
+codebase_rag/embedded_graph/__init__.py
+codebase_rag/embedded_graph/compiler.py
+codebase_rag/embedded_graph/connection.py
+codebase_rag/embedded_graph/cypher_ast.py
+codebase_rag/embedded_graph/executor.py
+codebase_rag/embedded_graph/expressions.py
+codebase_rag/embedded_graph/extension.py
+codebase_rag/embedded_graph/functions.py
+codebase_rag/embedded_graph/lexer.py
+codebase_rag/embedded_graph/limits.py
+codebase_rag/embedded_graph/native.py
+codebase_rag/embedded_graph/parser.py
+codebase_rag/embedded_graph/procedures.py
+codebase_rag/embedded_graph/sql.py
+codebase_rag/embedded_graph/store.py
+codebase_rag/embedded_graph/types.py
 codebase_rag/mcp/__init__.py
 codebase_rag/mcp/client.py
 codebase_rag/mcp/server.py
@@ -152,6 +189,7 @@ codebase_rag/mcp/tools.py
 codebase_rag/parsers/__init__.py
 codebase_rag/parsers/anchor_hash.py
 codebase_rag/parsers/ast_fingerprint.py
+codebase_rag/parsers/ast_grep_scope.py
 codebase_rag/parsers/ast_grep_tier.py
 codebase_rag/parsers/build_lock.py
 codebase_rag/parsers/call_processor.py
@@ -174,10 +212,13 @@ codebase_rag/parsers/flat_module.py
 codebase_rag/parsers/frontend_mode.py
 codebase_rag/parsers/function_ingest.py
 codebase_rag/parsers/import_processor.py
+codebase_rag/parsers/interface_fingerprint.py
 codebase_rag/parsers/java_generated.py
 codebase_rag/parsers/java_lombok.py
 codebase_rag/parsers/module_docstring.py
+codebase_rag/parsers/notebook.py
 codebase_rag/parsers/parameter_nodes.py
+codebase_rag/parsers/positional_params.py
 codebase_rag/parsers/python_source_roots.py
 codebase_rag/parsers/rpc_exposure.py
 codebase_rag/parsers/semantic_call_join.py
@@ -196,6 +237,7 @@ codebase_rag/parsers/ast_grep_patterns/ruby.yaml
 codebase_rag/parsers/ast_grep_patterns/solidity.yaml
 codebase_rag/parsers/ast_grep_patterns/swift.yaml
 codebase_rag/parsers/class_ingest/__init__.py
+codebase_rag/parsers/class_ingest/base_targets.py
 codebase_rag/parsers/class_ingest/cpp_modules.py
 codebase_rag/parsers/class_ingest/identity.py
 codebase_rag/parsers/class_ingest/method_override.py
@@ -205,7 +247,12 @@ codebase_rag/parsers/class_ingest/parent_extraction.py
 codebase_rag/parsers/class_ingest/relationships.py
 codebase_rag/parsers/class_ingest/utils.py
 codebase_rag/parsers/cpp/__init__.py
+codebase_rag/parsers/cpp/class_macro.py
+codebase_rag/parsers/cpp/function_values.py
+codebase_rag/parsers/cpp/local_types.py
+codebase_rag/parsers/cpp/overloads.py
 codebase_rag/parsers/cpp/preproc_recovery.py
+codebase_rag/parsers/cpp/trailing_annotation.py
 codebase_rag/parsers/cpp/type_inference.py
 codebase_rag/parsers/cpp/utils.py
 codebase_rag/parsers/cpp_frontend/__init__.py
@@ -213,6 +260,7 @@ codebase_rag/parsers/cpp_frontend/constants.py
 codebase_rag/parsers/cpp_frontend/frontend.py
 codebase_rag/parsers/cpp_frontend/qn.py
 codebase_rag/parsers/csharp/__init__.py
+codebase_rag/parsers/csharp/arity.py
 codebase_rag/parsers/csharp/type_inference.py
 codebase_rag/parsers/csharp/utils.py
 codebase_rag/parsers/csharp_frontend/__init__.py
@@ -235,6 +283,10 @@ codebase_rag/parsers/frontends/protocol.py
 codebase_rag/parsers/frontends/python.py
 codebase_rag/parsers/frontends/registry.py
 codebase_rag/parsers/go/__init__.py
+codebase_rag/parsers/go/builds.py
+codebase_rag/parsers/go/interface_ingest.py
+codebase_rag/parsers/go/interfaces.py
+codebase_rag/parsers/go/link_state.py
 codebase_rag/parsers/go/module_paths.py
 codebase_rag/parsers/go/type_inference.py
 codebase_rag/parsers/go/utils.py
@@ -248,6 +300,7 @@ codebase_rag/parsers/handlers/base.py
 codebase_rag/parsers/handlers/cpp.py
 codebase_rag/parsers/handlers/java.py
 codebase_rag/parsers/handlers/js_ts.py
+codebase_rag/parsers/handlers/julia.py
 codebase_rag/parsers/handlers/lua.py
 codebase_rag/parsers/handlers/php.py
 codebase_rag/parsers/handlers/protocol.py
@@ -261,6 +314,7 @@ codebase_rag/parsers/io_access/extract.py
 codebase_rag/parsers/io_access/models.py
 codebase_rag/parsers/io_access/processor.py
 codebase_rag/parsers/io_access/registry.py
+codebase_rag/parsers/io_access/url_folding.py
 codebase_rag/parsers/java/__init__.py
 codebase_rag/parsers/java/method_resolver.py
 codebase_rag/parsers/java/type_inference.py
@@ -271,25 +325,42 @@ codebase_rag/parsers/java_frontend/__init__.py
 codebase_rag/parsers/java_frontend/frontend.py
 codebase_rag/parsers/java_frontend/javac/cgr/Frontend.java
 codebase_rag/parsers/js_ts/__init__.py
+codebase_rag/parsers/js_ts/commonjs_exports.py
 codebase_rag/parsers/js_ts/ingest.py
 codebase_rag/parsers/js_ts/module_paths.py
 codebase_rag/parsers/js_ts/module_system.py
+codebase_rag/parsers/js_ts/overloads.py
+codebase_rag/parsers/js_ts/reexports.py
 codebase_rag/parsers/js_ts/type_inference.py
 codebase_rag/parsers/js_ts/utils.py
+codebase_rag/parsers/julia/__init__.py
+codebase_rag/parsers/julia/utils.py
 codebase_rag/parsers/lua/__init__.py
 codebase_rag/parsers/lua/type_inference.py
 codebase_rag/parsers/lua/utils.py
+codebase_rag/parsers/php/__init__.py
+codebase_rag/parsers/php/class_names.py
+codebase_rag/parsers/php/namespaces.py
+codebase_rag/parsers/php/utils.py
 codebase_rag/parsers/py/__init__.py
 codebase_rag/parsers/py/ast_analyzer.py
+codebase_rag/parsers/py/class_aliases.py
 codebase_rag/parsers/py/expression_analyzer.py
+codebase_rag/parsers/py/forward_refs.py
+codebase_rag/parsers/py/overloads.py
+codebase_rag/parsers/py/receiver_rebinding.py
 codebase_rag/parsers/py/type_inference.py
 codebase_rag/parsers/py/utils.py
 codebase_rag/parsers/py/variable_analyzer.py
+codebase_rag/parsers/py/with_analyzer.py
 codebase_rag/parsers/py_frontend/__init__.py
 codebase_rag/parsers/py_frontend/frontend.py
 codebase_rag/parsers/rs/__init__.py
+codebase_rag/parsers/rs/cargo_semver.py
 codebase_rag/parsers/rs/type_inference.py
 codebase_rag/parsers/rs/utils.py
+codebase_rag/parsers/scala/__init__.py
+codebase_rag/parsers/scala/utils.py
 codebase_rag/providers/__init__.py
 codebase_rag/providers/base.py
 codebase_rag/providers/litellm.py
@@ -297,6 +368,7 @@ codebase_rag/queries/highlights/c_sharp.scm
 codebase_rag/queries/highlights/dart.scm
 codebase_rag/queries/highlights/java.scm
 codebase_rag/queries/highlights/javascript.scm
+codebase_rag/queries/highlights/julia.scm
 codebase_rag/queries/highlights/php.scm
 codebase_rag/queries/highlights/python.scm
 codebase_rag/queries/highlights/rust.scm
@@ -328,9 +400,11 @@ codebase_rag/tools/duplicate_detection.py
 codebase_rag/tools/file_editor.py
 codebase_rag/tools/file_reader.py
 codebase_rag/tools/file_writer.py
+codebase_rag/tools/graph_refresh.py
 codebase_rag/tools/graph_rerank.py
 codebase_rag/tools/health_checker.py
 codebase_rag/tools/language.py
+codebase_rag/tools/language_catalog.py
 codebase_rag/tools/research.py
 codebase_rag/tools/semantic_search.py
 codebase_rag/tools/shell_command.py
@@ -339,6 +413,7 @@ codebase_rag/tools/structural_search.py
 codebase_rag/tools/tool_descriptions.py
 codebase_rag/tools/web_search.py
 codebase_rag/trace/__init__.py
+codebase_rag/trace/carry.py
 codebase_rag/trace/cli.py
 codebase_rag/trace/cpuprofile.py
 codebase_rag/trace/dispatch_site.py
@@ -355,13 +430,19 @@ codebase_rag/trace/speedscope.py
 codebase_rag/trace/tracer.py
 codebase_rag/trace/xdebug.py
 codebase_rag/utils/__init__.py
+codebase_rag/utils/cpp_signatures.py
 codebase_rag/utils/dependencies.py
+codebase_rag/utils/endpoints.py
 codebase_rag/utils/fqn_resolver.py
+codebase_rag/utils/interruptible_thread.py
 codebase_rag/utils/json_io.py
 codebase_rag/utils/path_utils.py
+codebase_rag/utils/process_owner.py
 codebase_rag/utils/qn_markers.py
 codebase_rag/utils/rich_markdown.py
+codebase_rag/utils/source_encoding.py
 codebase_rag/utils/source_extraction.py
+codebase_rag/utils/terminal_console.py
 codebase_rag/utils/token_utils.py
 codebase_rag/workspaces/__init__.py
 codebase_rag/workspaces/cli.py
@@ -369,5 +450,6 @@ codebase_rag/workspaces/constants.py
 codebase_rag/workspaces/models.py
 codebase_rag/workspaces/storage.py
 codec/__init__.py
+codec/schema.proto
 codec/schema_pb2.py
 codec/schema_pb2.pyi