code-graph-rag 0.1.38__tar.gz → 0.1.90__tar.gz

{code_graph_rag-0.1.38/code_graph_rag.egg-info → code_graph_rag-0.1.90}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: code-graph-rag
-Version: 0.1.38
+Version: 0.1.90
 Summary: The ultimate RAG for your monorepo. Query, understand, and edit multi-language codebases with the power of AI and knowledge graphs
 License-Expression: MIT
 Keywords: rag,retrieval-augmented-generation,knowledge-graph,code-analysis,tree-sitter,mcp,mcp-server,llm,graph-database,semantic-search,codebase,memgraph,developer-tools,monorepo
@@ -19,10 +19,10 @@ Requires-Python: >=3.12
 Description-Content-Type: text/markdown
 License-File: LICENSE
 Requires-Dist: loguru>=0.7.3
-Requires-Dist: mcp>=1.28.1
+Requires-Dist: mcp<2,>=1.28.1
 Requires-Dist: pydantic-ai-slim[anthropic,google,openai]>=2.0.0
 Requires-Dist: pydantic-settings>=2.12.0
-Requires-Dist: pymgclient>=1.5.1
+Requires-Dist: pymgclient>=1.6.0
 Requires-Dist: python-dotenv>=1.2.1
 Requires-Dist: tiktoken>=0.12.0
 Requires-Dist: tomli-w>=1.2.0
@@ -65,6 +65,7 @@ Requires-Dist: tree-sitter-java>=0.23.5; extra == "treesitter-full"
 Requires-Dist: tree-sitter-c>=0.24.1; extra == "treesitter-full"
 Requires-Dist: tree-sitter-cpp>=0.23.0; extra == "treesitter-full"
 Requires-Dist: tree-sitter-lua>=0.0.19; extra == "treesitter-full"
+Requires-Dist: tree-sitter-julia>=0.23.1; extra == "treesitter-full"
 Requires-Dist: tree-sitter-php>=0.24.1; extra == "treesitter-full"
 Requires-Dist: tree-sitter-c-sharp>=0.23.5; extra == "treesitter-full"
 Requires-Dist: tree-sitter-dart==0.1.0; extra == "treesitter-full"
@@ -112,12 +113,15 @@ Python, TypeScript, TSX, JavaScript, Rust, Go, Java, C, C++, C#, PHP, Lua, and D
 pip install code-graph-rag
 ```
 
-With all Tree-sitter grammars (Python, JS, TS, Rust, Go, Java, Scala, C, C++, C#, PHP, Lua, Dart):
+With all Tree-sitter grammars (Python, JS, TS, Rust, Go, Java, Scala, C, C++, C#, PHP, Lua, Dart) and the ast-grep tier (Ruby, Kotlin, Swift, Elixir, Haskell, Solidity, Bash, Nix):
 
 ```bash
-pip install 'code-graph-rag[treesitter-full]'
+pip install 'code-graph-rag[treesitter-full,ast-grep]'
 ```
 
+Without `ast-grep`, files in the ast-grep tier's languages are indexed as bare `File`
+nodes, and a sync that meets them says so in a warning.
+
 With semantic code search (UniXcoder embeddings):
 
 ```bash
@@ -145,7 +149,7 @@ ships immediately rather than waiting for the cadence.
 To run code newer than the latest release, install from git with uv:
 
 ```bash
-uv tool install "code-graph-rag[treesitter-full] @ git+https://github.com/vitali87/code-graph-rag@main"
+uv tool install "code-graph-rag[treesitter-full,ast-grep] @ git+https://github.com/vitali87/code-graph-rag@main"
 ```
 
 Use uv for this: it applies the project's `[tool.uv.sources]`, which build the C
@@ -154,7 +158,7 @@ and C++ grammars from forks that keep the declarations upstream drops after a
 installs the upstream grammars.
 
 To upgrade, rerun the install with `--upgrade` and the extras you chose, for
-example `pip install --upgrade 'code-graph-rag[treesitter-full]'`. With uv or pipx,
+example `pip install --upgrade 'code-graph-rag[treesitter-full,ast-grep]'`. With uv or pipx,
 run `uv tool upgrade code-graph-rag` or `pipx upgrade code-graph-rag` instead; see the
 [installation guide](https://github.com/vitali87/code-graph-rag/blob/main/docs/getting-started/installation.md#upgrade)
 for git installs and the other methods.
@@ -308,11 +312,13 @@ with MemgraphIngestor(host="localhost", port=7687) as db:
 import asyncio
 from cgr import CypherGenerator
 
+
 async def main():
     gen = CypherGenerator()
     cypher = await gen.generate("Find all classes that inherit from BaseModel")
     print(cypher)
 
+
 asyncio.run(main())
 ```
 

{code_graph_rag-0.1.38 → code_graph_rag-0.1.90}/PYPI_README.md

@@ -27,12 +27,15 @@ Python, TypeScript, TSX, JavaScript, Rust, Go, Java, C, C++, C#, PHP, Lua, and D
 pip install code-graph-rag
 ```
 
-With all Tree-sitter grammars (Python, JS, TS, Rust, Go, Java, Scala, C, C++, C#, PHP, Lua, Dart):
+With all Tree-sitter grammars (Python, JS, TS, Rust, Go, Java, Scala, C, C++, C#, PHP, Lua, Dart) and the ast-grep tier (Ruby, Kotlin, Swift, Elixir, Haskell, Solidity, Bash, Nix):
 
 ```bash
-pip install 'code-graph-rag[treesitter-full]'
+pip install 'code-graph-rag[treesitter-full,ast-grep]'
 ```
 
+Without `ast-grep`, files in the ast-grep tier's languages are indexed as bare `File`
+nodes, and a sync that meets them says so in a warning.
+
 With semantic code search (UniXcoder embeddings):
 
 ```bash
@@ -60,7 +63,7 @@ ships immediately rather than waiting for the cadence.
 To run code newer than the latest release, install from git with uv:
 
 ```bash
-uv tool install "code-graph-rag[treesitter-full] @ git+https://github.com/vitali87/code-graph-rag@main"
+uv tool install "code-graph-rag[treesitter-full,ast-grep] @ git+https://github.com/vitali87/code-graph-rag@main"
 ```
 
 Use uv for this: it applies the project's `[tool.uv.sources]`, which build the C
@@ -69,7 +72,7 @@ and C++ grammars from forks that keep the declarations upstream drops after a
 installs the upstream grammars.
 
 To upgrade, rerun the install with `--upgrade` and the extras you chose, for
-example `pip install --upgrade 'code-graph-rag[treesitter-full]'`. With uv or pipx,
+example `pip install --upgrade 'code-graph-rag[treesitter-full,ast-grep]'`. With uv or pipx,
 run `uv tool upgrade code-graph-rag` or `pipx upgrade code-graph-rag` instead; see the
 [installation guide](https://github.com/vitali87/code-graph-rag/blob/main/docs/getting-started/installation.md#upgrade)
 for git installs and the other methods.
@@ -223,11 +226,13 @@ with MemgraphIngestor(host="localhost", port=7687) as db:
 import asyncio
 from cgr import CypherGenerator
 
+
 async def main():
     gen = CypherGenerator()
     cypher = await gen.generate("Find all classes that inherit from BaseModel")
     print(cypher)
 
+
 asyncio.run(main())
 ```
 

{code_graph_rag-0.1.38 → code_graph_rag-0.1.90}/README.md

@@ -61,7 +61,8 @@ Code-Graph-RAG parses a multi-language codebase with Tree-sitter, sharpened by c
 ## Latest News 🔥
 
 <!-- SECTION:latest_news -->
-- **Incremental Indexing**: Improved handling of same-stem sibling matches and skipped EXPOSES cleanups during incremental updates.
+- **Contextual Queries**: Support for more detailed context queries has been added, including reasons and evaluation ingestor reads, enhancing the understanding of code interactions.
+- **Graph Improvements**: The graph analysis capabilities have been expanded to follow cross-service links and implementors/overrides, providing a more comprehensive view of code dependencies.
 <!-- /SECTION:latest_news -->
 
 See [NEWS.md](NEWS.md) for the full history.
@@ -95,18 +96,18 @@ See the [Architecture Overview](docs/architecture/overview.md) and [Graph Schema
 
 ## Supported Languages
 
-Python, TypeScript, TSX, JavaScript, Rust, Go, Java, C, C++, C#, PHP, Lua, and Dart are fully supported. Scala is in development, and Ruby, Kotlin, Swift, Elixir, Haskell, Solidity, Bash, and Nix have structural support (modules, functions, classes where the language has them, and imports) through the pluggable ast-grep tier. See the [Language Support](docs/architecture/language-support.md) matrix for per-language capabilities.
+Python, TypeScript, TSX, JavaScript, Rust, Go, Java, C, C++, C#, PHP, Lua, Dart, and Julia are fully supported. Scala is in development, and Ruby, Kotlin, Swift, Elixir, Haskell, Solidity, Bash, and Nix have structural support (modules, functions, classes where the language has them, and imports) through the pluggable ast-grep tier. See the [Language Support](docs/architecture/language-support.md) matrix for per-language capabilities.
 
 ## Installation
 
-`cgr` is published to PyPI. Install it system-wide with the `treesitter-full` (all languages) and `semantic` (vector search) extras:
+`cgr` is published to PyPI. Install it system-wide with the `treesitter-full` (tree-sitter grammars), `ast-grep` (Ruby, Kotlin, Swift, Elixir, Haskell, Solidity, Bash, Nix) and `semantic` (vector search) extras:
 
 ```bash
 # with uv (recommended)
-uv tool install "code-graph-rag[treesitter-full,semantic]"
+uv tool install "code-graph-rag[treesitter-full,ast-grep,semantic]"
 
 # or with pipx
-pipx install "code-graph-rag[treesitter-full,semantic]"
+pipx install "code-graph-rag[treesitter-full,ast-grep,semantic]"
 ```
 
 ### Which version am I getting?
@@ -131,7 +132,7 @@ addressable; binaries and PyPI uploads follow the cadence above.
 To run code newer than the latest release, install from git:
 
 ```bash
-uv tool install "code-graph-rag[treesitter-full,semantic] @ git+https://github.com/vitali87/code-graph-rag@main"
+uv tool install "code-graph-rag[treesitter-full,ast-grep,semantic] @ git+https://github.com/vitali87/code-graph-rag@main"
 ```
 
 To upgrade an existing install, run `uv tool upgrade code-graph-rag` (with pipx, `pipx upgrade code-graph-rag`, or `pipx reinstall code-graph-rag` for a git install). [Upgrade](docs/getting-started/installation.md#upgrade) covers the other install methods.
@@ -158,6 +159,8 @@ empty graph, add `--clean` — it deletes **every** project in the shared graph,
 not just this one, and asks for confirmation first when other
 projects would be destroyed.
 
+A default index leaves out the opt-in [capture groups](docs/architecture/graph-schema.md#capture-groups); add them with `--capture` or `CGR_CAPTURE`.
+
 The [Quick Start](docs/getting-started/quickstart.md) guide walks through parsing, querying, and exporting in five minutes.
 
 ## MCP Server

{code_graph_rag-0.1.38 → code_graph_rag-0.1.90/code_graph_rag.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: code-graph-rag
-Version: 0.1.38
+Version: 0.1.90
 Summary: The ultimate RAG for your monorepo. Query, understand, and edit multi-language codebases with the power of AI and knowledge graphs
 License-Expression: MIT
 Keywords: rag,retrieval-augmented-generation,knowledge-graph,code-analysis,tree-sitter,mcp,mcp-server,llm,graph-database,semantic-search,codebase,memgraph,developer-tools,monorepo
@@ -19,10 +19,10 @@ Requires-Python: >=3.12
 Description-Content-Type: text/markdown
 License-File: LICENSE
 Requires-Dist: loguru>=0.7.3
-Requires-Dist: mcp>=1.28.1
+Requires-Dist: mcp<2,>=1.28.1
 Requires-Dist: pydantic-ai-slim[anthropic,google,openai]>=2.0.0
 Requires-Dist: pydantic-settings>=2.12.0
-Requires-Dist: pymgclient>=1.5.1
+Requires-Dist: pymgclient>=1.6.0
 Requires-Dist: python-dotenv>=1.2.1
 Requires-Dist: tiktoken>=0.12.0
 Requires-Dist: tomli-w>=1.2.0
@@ -65,6 +65,7 @@ Requires-Dist: tree-sitter-java>=0.23.5; extra == "treesitter-full"
 Requires-Dist: tree-sitter-c>=0.24.1; extra == "treesitter-full"
 Requires-Dist: tree-sitter-cpp>=0.23.0; extra == "treesitter-full"
 Requires-Dist: tree-sitter-lua>=0.0.19; extra == "treesitter-full"
+Requires-Dist: tree-sitter-julia>=0.23.1; extra == "treesitter-full"
 Requires-Dist: tree-sitter-php>=0.24.1; extra == "treesitter-full"
 Requires-Dist: tree-sitter-c-sharp>=0.23.5; extra == "treesitter-full"
 Requires-Dist: tree-sitter-dart==0.1.0; extra == "treesitter-full"
@@ -112,12 +113,15 @@ Python, TypeScript, TSX, JavaScript, Rust, Go, Java, C, C++, C#, PHP, Lua, and D
 pip install code-graph-rag
 ```
 
-With all Tree-sitter grammars (Python, JS, TS, Rust, Go, Java, Scala, C, C++, C#, PHP, Lua, Dart):
+With all Tree-sitter grammars (Python, JS, TS, Rust, Go, Java, Scala, C, C++, C#, PHP, Lua, Dart) and the ast-grep tier (Ruby, Kotlin, Swift, Elixir, Haskell, Solidity, Bash, Nix):
 
 ```bash
-pip install 'code-graph-rag[treesitter-full]'
+pip install 'code-graph-rag[treesitter-full,ast-grep]'
 ```
 
+Without `ast-grep`, files in the ast-grep tier's languages are indexed as bare `File`
+nodes, and a sync that meets them says so in a warning.
+
 With semantic code search (UniXcoder embeddings):
 
 ```bash
@@ -145,7 +149,7 @@ ships immediately rather than waiting for the cadence.
 To run code newer than the latest release, install from git with uv:
 
 ```bash
-uv tool install "code-graph-rag[treesitter-full] @ git+https://github.com/vitali87/code-graph-rag@main"
+uv tool install "code-graph-rag[treesitter-full,ast-grep] @ git+https://github.com/vitali87/code-graph-rag@main"
 ```
 
 Use uv for this: it applies the project's `[tool.uv.sources]`, which build the C
@@ -154,7 +158,7 @@ and C++ grammars from forks that keep the declarations upstream drops after a
 installs the upstream grammars.
 
 To upgrade, rerun the install with `--upgrade` and the extras you chose, for
-example `pip install --upgrade 'code-graph-rag[treesitter-full]'`. With uv or pipx,
+example `pip install --upgrade 'code-graph-rag[treesitter-full,ast-grep]'`. With uv or pipx,
 run `uv tool upgrade code-graph-rag` or `pipx upgrade code-graph-rag` instead; see the
 [installation guide](https://github.com/vitali87/code-graph-rag/blob/main/docs/getting-started/installation.md#upgrade)
 for git installs and the other methods.
@@ -308,11 +312,13 @@ with MemgraphIngestor(host="localhost", port=7687) as db:
 import asyncio
 from cgr import CypherGenerator
 
+
 async def main():
     gen = CypherGenerator()
     cypher = await gen.generate("Find all classes that inherit from BaseModel")
     print(cypher)
 
+
 asyncio.run(main())
 ```
 

{code_graph_rag-0.1.38 → code_graph_rag-0.1.90}/code_graph_rag.egg-info/SOURCES.txt

@@ -13,13 +13,15 @@ codebase_rag/__init__.py
 codebase_rag/_cli_env.py
 codebase_rag/ast_cache.py
 codebase_rag/capture.py
-codebase_rag/cgr_state.py
+codebase_rag/check_isolation.py
+codebase_rag/checkout_state.py
 codebase_rag/cli.py
 codebase_rag/cli_help.py
 codebase_rag/cli_runtime.py
 codebase_rag/config.py
 codebase_rag/console_marks.py
 codebase_rag/context_pruning.py
+codebase_rag/context_slice.py
 codebase_rag/crash_correlation.py
 codebase_rag/cypher_queries.py
 codebase_rag/dead_code.py
@@ -40,13 +42,16 @@ codebase_rag/graph_dialects.py
 codebase_rag/graph_loader.py
 codebase_rag/graph_query.py
 codebase_rag/graph_updater.py
+codebase_rag/interface_skip.py
 codebase_rag/language_spec.py
 codebase_rag/logs.py
 codebase_rag/main.py
+codebase_rag/mgclient_probe.py
 codebase_rag/models.py
 codebase_rag/parser_fingerprint.py
 codebase_rag/parser_loader.py
 codebase_rag/path_filters.py
+codebase_rag/project_selection.py
 codebase_rag/prompts.py
 codebase_rag/readme_sections.py
 codebase_rag/schema_builder.py
@@ -55,11 +60,15 @@ codebase_rag/schemas.py
 codebase_rag/sql_names.py
 codebase_rag/structural_check.py
 codebase_rag/structural_delta.py
+codebase_rag/sync_guard.py
+codebase_rag/sync_lock.py
 codebase_rag/taint.py
 codebase_rag/tool_errors.py
+codebase_rag/tree_sitter_point.py
 codebase_rag/types_defs.py
 codebase_rag/unixcoder.py
 codebase_rag/vector_store.py
+codebase_rag/watch.py
 codebase_rag/analyzers/__init__.py
 codebase_rag/analyzers/ast_grep_analyzer.py
 codebase_rag/analyzers/ast_grep_rules/patterns/c.yaml
@@ -114,6 +123,7 @@ codebase_rag/constants/ast_dart.py
 codebase_rag/constants/ast_go.py
 codebase_rag/constants/ast_java.py
 codebase_rag/constants/ast_js.py
+codebase_rag/constants/ast_julia.py
 codebase_rag/constants/ast_lua.py
 codebase_rag/constants/ast_nodes.py
 codebase_rag/constants/ast_php.py
@@ -130,9 +140,11 @@ codebase_rag/constants/duplicates.py
 codebase_rag/constants/fqn_specs.py
 codebase_rag/constants/graph.py
 codebase_rag/constants/health.py
+codebase_rag/constants/interface.py
 codebase_rag/constants/lang_tooling.py
 codebase_rag/constants/languages.py
 codebase_rag/constants/mcp.py
+codebase_rag/constants/notebook.py
 codebase_rag/constants/providers.py
 codebase_rag/constants/security.py
 codebase_rag/constants/stdlib_types.py
@@ -141,9 +153,14 @@ codebase_rag/constants/trace.py
 codebase_rag/editing/__init__.py
 codebase_rag/editing/cli.py
 codebase_rag/editing/contract.py
+codebase_rag/editing/import_paths.py
 codebase_rag/editing/imports.py
+codebase_rag/editing/occurrences.py
 codebase_rag/editing/patcher.py
 codebase_rag/editing/rename.py
+codebase_rag/editing/signature_contract.py
+codebase_rag/editing/signature_spec.py
+codebase_rag/editing/sites.py
 codebase_rag/editing/transaction.py
 codebase_rag/mcp/__init__.py
 codebase_rag/mcp/client.py
@@ -152,6 +169,7 @@ codebase_rag/mcp/tools.py
 codebase_rag/parsers/__init__.py
 codebase_rag/parsers/anchor_hash.py
 codebase_rag/parsers/ast_fingerprint.py
+codebase_rag/parsers/ast_grep_scope.py
 codebase_rag/parsers/ast_grep_tier.py
 codebase_rag/parsers/build_lock.py
 codebase_rag/parsers/call_processor.py
@@ -174,10 +192,13 @@ codebase_rag/parsers/flat_module.py
 codebase_rag/parsers/frontend_mode.py
 codebase_rag/parsers/function_ingest.py
 codebase_rag/parsers/import_processor.py
+codebase_rag/parsers/interface_fingerprint.py
 codebase_rag/parsers/java_generated.py
 codebase_rag/parsers/java_lombok.py
 codebase_rag/parsers/module_docstring.py
+codebase_rag/parsers/notebook.py
 codebase_rag/parsers/parameter_nodes.py
+codebase_rag/parsers/positional_params.py
 codebase_rag/parsers/python_source_roots.py
 codebase_rag/parsers/rpc_exposure.py
 codebase_rag/parsers/semantic_call_join.py
@@ -196,6 +217,7 @@ codebase_rag/parsers/ast_grep_patterns/ruby.yaml
 codebase_rag/parsers/ast_grep_patterns/solidity.yaml
 codebase_rag/parsers/ast_grep_patterns/swift.yaml
 codebase_rag/parsers/class_ingest/__init__.py
+codebase_rag/parsers/class_ingest/base_targets.py
 codebase_rag/parsers/class_ingest/cpp_modules.py
 codebase_rag/parsers/class_ingest/identity.py
 codebase_rag/parsers/class_ingest/method_override.py
@@ -205,7 +227,12 @@ codebase_rag/parsers/class_ingest/parent_extraction.py
 codebase_rag/parsers/class_ingest/relationships.py
 codebase_rag/parsers/class_ingest/utils.py
 codebase_rag/parsers/cpp/__init__.py
+codebase_rag/parsers/cpp/class_macro.py
+codebase_rag/parsers/cpp/function_values.py
+codebase_rag/parsers/cpp/local_types.py
+codebase_rag/parsers/cpp/overloads.py
 codebase_rag/parsers/cpp/preproc_recovery.py
+codebase_rag/parsers/cpp/trailing_annotation.py
 codebase_rag/parsers/cpp/type_inference.py
 codebase_rag/parsers/cpp/utils.py
 codebase_rag/parsers/cpp_frontend/__init__.py
@@ -213,6 +240,7 @@ codebase_rag/parsers/cpp_frontend/constants.py
 codebase_rag/parsers/cpp_frontend/frontend.py
 codebase_rag/parsers/cpp_frontend/qn.py
 codebase_rag/parsers/csharp/__init__.py
+codebase_rag/parsers/csharp/arity.py
 codebase_rag/parsers/csharp/type_inference.py
 codebase_rag/parsers/csharp/utils.py
 codebase_rag/parsers/csharp_frontend/__init__.py
@@ -235,6 +263,10 @@ codebase_rag/parsers/frontends/protocol.py
 codebase_rag/parsers/frontends/python.py
 codebase_rag/parsers/frontends/registry.py
 codebase_rag/parsers/go/__init__.py
+codebase_rag/parsers/go/builds.py
+codebase_rag/parsers/go/interface_ingest.py
+codebase_rag/parsers/go/interfaces.py
+codebase_rag/parsers/go/link_state.py
 codebase_rag/parsers/go/module_paths.py
 codebase_rag/parsers/go/type_inference.py
 codebase_rag/parsers/go/utils.py
@@ -248,6 +280,7 @@ codebase_rag/parsers/handlers/base.py
 codebase_rag/parsers/handlers/cpp.py
 codebase_rag/parsers/handlers/java.py
 codebase_rag/parsers/handlers/js_ts.py
+codebase_rag/parsers/handlers/julia.py
 codebase_rag/parsers/handlers/lua.py
 codebase_rag/parsers/handlers/php.py
 codebase_rag/parsers/handlers/protocol.py
@@ -261,6 +294,7 @@ codebase_rag/parsers/io_access/extract.py
 codebase_rag/parsers/io_access/models.py
 codebase_rag/parsers/io_access/processor.py
 codebase_rag/parsers/io_access/registry.py
+codebase_rag/parsers/io_access/url_folding.py
 codebase_rag/parsers/java/__init__.py
 codebase_rag/parsers/java/method_resolver.py
 codebase_rag/parsers/java/type_inference.py
@@ -271,25 +305,42 @@ codebase_rag/parsers/java_frontend/__init__.py
 codebase_rag/parsers/java_frontend/frontend.py
 codebase_rag/parsers/java_frontend/javac/cgr/Frontend.java
 codebase_rag/parsers/js_ts/__init__.py
+codebase_rag/parsers/js_ts/commonjs_exports.py
 codebase_rag/parsers/js_ts/ingest.py
 codebase_rag/parsers/js_ts/module_paths.py
 codebase_rag/parsers/js_ts/module_system.py
+codebase_rag/parsers/js_ts/overloads.py
+codebase_rag/parsers/js_ts/reexports.py
 codebase_rag/parsers/js_ts/type_inference.py
 codebase_rag/parsers/js_ts/utils.py
+codebase_rag/parsers/julia/__init__.py
+codebase_rag/parsers/julia/utils.py
 codebase_rag/parsers/lua/__init__.py
 codebase_rag/parsers/lua/type_inference.py
 codebase_rag/parsers/lua/utils.py
+codebase_rag/parsers/php/__init__.py
+codebase_rag/parsers/php/class_names.py
+codebase_rag/parsers/php/namespaces.py
+codebase_rag/parsers/php/utils.py
 codebase_rag/parsers/py/__init__.py
 codebase_rag/parsers/py/ast_analyzer.py
+codebase_rag/parsers/py/class_aliases.py
 codebase_rag/parsers/py/expression_analyzer.py
+codebase_rag/parsers/py/forward_refs.py
+codebase_rag/parsers/py/overloads.py
+codebase_rag/parsers/py/receiver_rebinding.py
 codebase_rag/parsers/py/type_inference.py
 codebase_rag/parsers/py/utils.py
 codebase_rag/parsers/py/variable_analyzer.py
+codebase_rag/parsers/py/with_analyzer.py
 codebase_rag/parsers/py_frontend/__init__.py
 codebase_rag/parsers/py_frontend/frontend.py
 codebase_rag/parsers/rs/__init__.py
+codebase_rag/parsers/rs/cargo_semver.py
 codebase_rag/parsers/rs/type_inference.py
 codebase_rag/parsers/rs/utils.py
+codebase_rag/parsers/scala/__init__.py
+codebase_rag/parsers/scala/utils.py
 codebase_rag/providers/__init__.py
 codebase_rag/providers/base.py
 codebase_rag/providers/litellm.py
@@ -297,6 +348,7 @@ codebase_rag/queries/highlights/c_sharp.scm
 codebase_rag/queries/highlights/dart.scm
 codebase_rag/queries/highlights/java.scm
 codebase_rag/queries/highlights/javascript.scm
+codebase_rag/queries/highlights/julia.scm
 codebase_rag/queries/highlights/php.scm
 codebase_rag/queries/highlights/python.scm
 codebase_rag/queries/highlights/rust.scm
@@ -328,9 +380,11 @@ codebase_rag/tools/duplicate_detection.py
 codebase_rag/tools/file_editor.py
 codebase_rag/tools/file_reader.py
 codebase_rag/tools/file_writer.py
+codebase_rag/tools/graph_refresh.py
 codebase_rag/tools/graph_rerank.py
 codebase_rag/tools/health_checker.py
 codebase_rag/tools/language.py
+codebase_rag/tools/language_catalog.py
 codebase_rag/tools/research.py
 codebase_rag/tools/semantic_search.py
 codebase_rag/tools/shell_command.py
@@ -339,6 +393,7 @@ codebase_rag/tools/structural_search.py
 codebase_rag/tools/tool_descriptions.py
 codebase_rag/tools/web_search.py
 codebase_rag/trace/__init__.py
+codebase_rag/trace/carry.py
 codebase_rag/trace/cli.py
 codebase_rag/trace/cpuprofile.py
 codebase_rag/trace/dispatch_site.py
@@ -355,13 +410,19 @@ codebase_rag/trace/speedscope.py
 codebase_rag/trace/tracer.py
 codebase_rag/trace/xdebug.py
 codebase_rag/utils/__init__.py
+codebase_rag/utils/cpp_signatures.py
 codebase_rag/utils/dependencies.py
+codebase_rag/utils/endpoints.py
 codebase_rag/utils/fqn_resolver.py
+codebase_rag/utils/interruptible_thread.py
 codebase_rag/utils/json_io.py
 codebase_rag/utils/path_utils.py
+codebase_rag/utils/process_owner.py
 codebase_rag/utils/qn_markers.py
 codebase_rag/utils/rich_markdown.py
+codebase_rag/utils/source_encoding.py
 codebase_rag/utils/source_extraction.py
+codebase_rag/utils/terminal_console.py
 codebase_rag/utils/token_utils.py
 codebase_rag/workspaces/__init__.py
 codebase_rag/workspaces/cli.py
@@ -369,5 +430,6 @@ codebase_rag/workspaces/constants.py
 codebase_rag/workspaces/models.py
 codebase_rag/workspaces/storage.py
 codec/__init__.py
+codec/schema.proto
 codec/schema_pb2.py
 codec/schema_pb2.pyi

{code_graph_rag-0.1.38 → code_graph_rag-0.1.90}/code_graph_rag.egg-info/requires.txt

@@ -1,8 +1,8 @@
 loguru>=0.7.3
-mcp>=1.28.1
+mcp<2,>=1.28.1
 pydantic-ai-slim[anthropic,google,openai]>=2.0.0
 pydantic-settings>=2.12.0
-pymgclient>=1.5.1
+pymgclient>=1.6.0
 python-dotenv>=1.2.1
 tiktoken>=0.12.0
 tomli-w>=1.2.0
@@ -64,6 +64,7 @@ tree-sitter-java>=0.23.5
 tree-sitter-c>=0.24.1
 tree-sitter-cpp>=0.23.0
 tree-sitter-lua>=0.0.19
+tree-sitter-julia>=0.23.1
 tree-sitter-php>=0.24.1
 tree-sitter-c-sharp>=0.23.5
 tree-sitter-dart==0.1.0

{code_graph_rag-0.1.38 → code_graph_rag-0.1.90}/codebase_rag/__init__.py

@@ -1 +1,3 @@
 """Code Graph RAG: build a queryable graph of a codebase and reason over it."""
+
+from . import tree_sitter_point as _tree_sitter_point  # noqa: F401

{code_graph_rag-0.1.38 → code_graph_rag-0.1.90}/codebase_rag/_cli_env.py

@@ -7,8 +7,14 @@ model or settings class is built; that imports OpenTelemetry and friends
 default applies to the CLI process only, so an application embedding
 codebase_rag keeps its own plugins. A value the user set, including an empty
 one that keeps every plugin, is left alone.
+
+pydantic-ai also prints a first-run banner (a logo, the agent's model and an
+observability advert) when an agent first runs. cgr owns its terminal UI, and
+`cgr mcp-server` speaks a protocol over stdout, so the CLI turns the banner off
+the same way, leaving a value the user already set as it is (issue #2358).
 """
 
 import os
 
 os.environ.setdefault("PYDANTIC_DISABLE_PLUGINS", "logfire-plugin")
+os.environ.setdefault("PYDANTIC_AI_NO_BANNER", "1")

{code_graph_rag-0.1.38 → code_graph_rag-0.1.90}/codebase_rag/analyzers/ast_grep_analyzer.py

@@ -8,20 +8,20 @@
 # line so the site is still locatable. Symbol-level linkage is a follow-up.
 from __future__ import annotations
 
-import logging
 from dataclasses import dataclass
 from pathlib import Path
 from typing import TYPE_CHECKING, Any
 
+from loguru import logger
+
 from .. import constants as cs
+from .. import logs as ls
 from ..utils.path_utils import cached_relative_path
 
 if TYPE_CHECKING:
     from ..capture import CaptureSelection
     from ..services import IngestorProtocol
 
-logger = logging.getLogger(__name__)
-
 _RULES_DIR = Path(__file__).parent / "ast_grep_rules"
 _SNIPPET_MAX = 200
 
@@ -118,11 +118,12 @@ class FindingAnalyzer:
 
             self._rules = load_finding_rules()
         except ImportError:
-            # ast-grep/pyyaml are the [ast-grep] extra; no-op if absent.
-            logger.warning("ast-grep-py unavailable; finding analyzer disabled")
+            # ast-grep/pyyaml are the [ast-grep] extra; no-op if absent. Only
+            # reached when findings were asked for, so it is worth a warning.
+            logger.warning(ls.AST_GREP_FINDINGS_UNAVAILABLE)
         except Exception as exc:  # noqa: BLE001
             # a malformed shipped rule file must not crash indexing.
-            logger.warning("ast-grep finding analyzer disabled: %s", exc)
+            logger.warning(ls.AST_GREP_FINDINGS_DISABLED, error=exc)
 
     def analyze(self, module_qn_to_file_path: dict[str, Path]) -> None:
         if not self._enabled or not self._rules:
@@ -143,7 +144,7 @@ class FindingAnalyzer:
             try:
                 root = SgRoot(source, lang_rules.ast_grep_id).root()
             except (RuntimeError, ValueError) as exc:
-                logger.warning("ast-grep failed to parse %s: %s", file_path, exc)
+                logger.warning(ls.AST_GREP_PARSE_FAILED, path=file_path, error=exc)
                 continue
             relative_path = cached_relative_path(file_path, self._repo_path).as_posix()
             for rule in lang_rules.rules:
@@ -161,7 +162,7 @@ class FindingAnalyzer:
             matches = root.find_all(**rule.body)
         except (RuntimeError, TypeError, ValueError) as exc:
             logger.warning(
-                "bad ast-grep rule %r for %s: %s", rule.rule_id, file_path, exc
+                ls.AST_GREP_BAD_RULE, rule=rule.rule_id, path=file_path, error=exc
             )
             return
         for node in matches: