code-graph-rag 0.0.996__tar.gz → 0.1.38__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (380) hide show
  1. {code_graph_rag-0.0.996/code_graph_rag.egg-info → code_graph_rag-0.1.38}/PKG-INFO +19 -8
  2. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/PYPI_README.md +13 -2
  3. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/README.md +16 -4
  4. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38/code_graph_rag.egg-info}/PKG-INFO +19 -8
  5. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/code_graph_rag.egg-info/SOURCES.txt +3 -0
  6. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/code_graph_rag.egg-info/requires.txt +5 -5
  7. code_graph_rag-0.1.38/codebase_rag/_cli_env.py +14 -0
  8. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/cli.py +401 -122
  9. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/cli_help.py +4 -1
  10. code_graph_rag-0.1.38/codebase_rag/cli_runtime.py +37 -0
  11. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/config.py +27 -0
  12. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/constants/ast_csharp.py +151 -0
  13. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/constants/ast_dart.py +4 -0
  14. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/constants/ast_python.py +6 -0
  15. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/constants/build.py +15 -1
  16. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/constants/cli.py +89 -8
  17. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/constants/core.py +19 -0
  18. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/constants/graph.py +24 -3
  19. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/constants/providers.py +15 -0
  20. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/constants/security.py +14 -7
  21. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/constants/trace.py +22 -2
  22. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/crash_correlation.py +5 -1
  23. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/cypher_queries.py +28 -1
  24. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/dead_code.py +287 -182
  25. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/decorators.py +47 -0
  26. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/docker-compose.yaml +15 -3
  27. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/editing/rename.py +100 -43
  28. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/embedder.py +7 -0
  29. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/exceptions.py +16 -4
  30. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/graph_audit.py +9 -0
  31. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/graph_cli.py +1 -1
  32. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/graph_updater.py +1702 -733
  33. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/logs.py +23 -0
  34. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/main.py +126 -119
  35. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/ast_grep_tier.py +1 -1
  36. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/call_processor.py +3246 -2295
  37. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/call_resolver.py +638 -174
  38. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/class_ingest/cpp_modules.py +24 -17
  39. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/class_ingest/method_override.py +130 -85
  40. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/class_ingest/mixin.py +912 -672
  41. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/class_ingest/parent_extraction.py +91 -40
  42. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/class_ingest/relationships.py +115 -64
  43. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/contracts.py +2 -2
  44. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/cpp/preproc_recovery.py +15 -8
  45. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/cpp/type_inference.py +1 -3
  46. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/cpp/utils.py +72 -63
  47. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/csharp/type_inference.py +527 -157
  48. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/csharp/utils.py +15 -4
  49. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/csharp_frontend/frontend.py +2 -2
  50. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/dart/__init__.py +4 -0
  51. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/dart/utils.py +265 -12
  52. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/definition_processor.py +195 -131
  53. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/dependency_parser.py +35 -22
  54. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/dispatch_registry.py +2 -6
  55. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/endpoints.py +47 -33
  56. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/export_detection.py +26 -25
  57. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/factory.py +1 -0
  58. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/flow_access/processor.py +757 -538
  59. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/function_ingest.py +494 -384
  60. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/go/type_inference.py +2 -4
  61. code_graph_rag-0.1.38/codebase_rag/parsers/go_frontend/gotypes/go.mod +12 -0
  62. code_graph_rag-0.1.38/codebase_rag/parsers/go_frontend/gotypes/go.sum +8 -0
  63. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/go_frontend/gotypes/main.go +1 -1
  64. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/handlers/base.py +1 -3
  65. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/handlers/cpp.py +6 -5
  66. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/handlers/js_ts.py +35 -21
  67. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/handlers/php.py +10 -10
  68. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/import_processor.py +1086 -706
  69. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/io_access/extract.py +62 -47
  70. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/io_access/processor.py +38 -30
  71. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/java/method_resolver.py +120 -78
  72. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/java/utils.py +10 -9
  73. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/java/variable_analyzer.py +37 -19
  74. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/js_ts/module_paths.py +3 -3
  75. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/js_ts/module_system.py +57 -40
  76. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/js_ts/type_inference.py +146 -104
  77. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/js_ts/utils.py +21 -13
  78. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/lua/type_inference.py +33 -25
  79. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/parameter_nodes.py +15 -0
  80. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/py/ast_analyzer.py +180 -100
  81. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/py/type_inference.py +3 -2
  82. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/py/utils.py +1 -1
  83. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/py/variable_analyzer.py +35 -22
  84. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/rs/type_inference.py +25 -18
  85. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/rs/utils.py +146 -100
  86. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/stdlib_extractor.py +54 -47
  87. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/type_inference.py +45 -84
  88. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/parsers/utils.py +320 -250
  89. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/providers/base.py +57 -14
  90. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/providers/litellm.py +16 -7
  91. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/readme_sections.py +33 -5
  92. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/services/anthropic_token_counter.py +69 -48
  93. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/services/graph_service.py +174 -101
  94. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/services/llm.py +14 -8
  95. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/services/neo4j_driver.py +84 -30
  96. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/services/protobuf_service.py +27 -21
  97. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/services/usage_cost.py +1 -1
  98. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/stack/cli.py +1 -0
  99. code_graph_rag-0.1.38/codebase_rag/stack/constants.py +189 -0
  100. code_graph_rag-0.1.38/codebase_rag/stack/health.py +203 -0
  101. code_graph_rag-0.1.38/codebase_rag/stack/manager.py +922 -0
  102. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/structural_check.py +53 -14
  103. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/tool_errors.py +4 -0
  104. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/tools/code_retrieval.py +21 -28
  105. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/tools/codebase_query.py +172 -61
  106. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/tools/file_editor.py +104 -84
  107. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/tools/health_checker.py +4 -1
  108. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/tools/language.py +61 -52
  109. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/tools/semantic_search.py +18 -20
  110. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/tools/shell_command.py +817 -612
  111. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/trace/cli.py +34 -2
  112. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/trace/instrumented.py +10 -4
  113. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/trace/pprof.py +58 -6
  114. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/types_defs.py +10 -10
  115. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/unixcoder.py +27 -28
  116. code_graph_rag-0.1.38/codebase_rag/utils/json_io.py +31 -0
  117. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/utils/path_utils.py +77 -0
  118. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/utils/token_utils.py +1 -1
  119. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/vector_store.py +72 -12
  120. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/workspaces/cli.py +1 -0
  121. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/workspaces/models.py +3 -0
  122. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/workspaces/storage.py +4 -3
  123. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/pyproject.toml +21 -15
  124. code_graph_rag-0.0.996/codebase_rag/parsers/go_frontend/gotypes/go.mod +0 -12
  125. code_graph_rag-0.0.996/codebase_rag/parsers/go_frontend/gotypes/go.sum +0 -8
  126. code_graph_rag-0.0.996/codebase_rag/stack/constants.py +0 -71
  127. code_graph_rag-0.0.996/codebase_rag/stack/health.py +0 -61
  128. code_graph_rag-0.0.996/codebase_rag/stack/manager.py +0 -365
  129. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/LICENSE +0 -0
  130. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/cgr/__init__.py +0 -0
  131. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/code_graph_rag.egg-info/dependency_links.txt +0 -0
  132. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/code_graph_rag.egg-info/entry_points.txt +0 -0
  133. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/code_graph_rag.egg-info/top_level.txt +0 -0
  134. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/__init__.py +0 -0
  135. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/analyzers/__init__.py +0 -0
  136. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/analyzers/ast_grep_analyzer.py +0 -0
  137. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/analyzers/ast_grep_rules/patterns/c.yaml +0 -0
  138. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/analyzers/ast_grep_rules/patterns/cpp.yaml +0 -0
  139. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/analyzers/ast_grep_rules/patterns/csharp.yaml +0 -0
  140. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/analyzers/ast_grep_rules/patterns/dart.yaml +0 -0
  141. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/analyzers/ast_grep_rules/patterns/go.yaml +0 -0
  142. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/analyzers/ast_grep_rules/patterns/java.yaml +0 -0
  143. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/analyzers/ast_grep_rules/patterns/javascript.yaml +0 -0
  144. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/analyzers/ast_grep_rules/patterns/lua.yaml +0 -0
  145. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/analyzers/ast_grep_rules/patterns/php.yaml +0 -0
  146. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/analyzers/ast_grep_rules/patterns/python.yaml +0 -0
  147. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/analyzers/ast_grep_rules/patterns/ruby.yaml +0 -0
  148. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/analyzers/ast_grep_rules/patterns/rust.yaml +0 -0
  149. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/analyzers/ast_grep_rules/patterns/scala.yaml +0 -0
  150. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/analyzers/ast_grep_rules/patterns/tsx.yaml +0 -0
  151. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/analyzers/ast_grep_rules/patterns/typescript.yaml +0 -0
  152. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/analyzers/ast_grep_rules/security/c.yaml +0 -0
  153. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/analyzers/ast_grep_rules/security/cpp.yaml +0 -0
  154. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/analyzers/ast_grep_rules/security/csharp.yaml +0 -0
  155. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/analyzers/ast_grep_rules/security/dart.yaml +0 -0
  156. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/analyzers/ast_grep_rules/security/go.yaml +0 -0
  157. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/analyzers/ast_grep_rules/security/java.yaml +0 -0
  158. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/analyzers/ast_grep_rules/security/javascript.yaml +0 -0
  159. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/analyzers/ast_grep_rules/security/lua.yaml +0 -0
  160. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/analyzers/ast_grep_rules/security/php.yaml +0 -0
  161. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/analyzers/ast_grep_rules/security/python.yaml +0 -0
  162. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/analyzers/ast_grep_rules/security/ruby.yaml +0 -0
  163. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/analyzers/ast_grep_rules/security/rust.yaml +0 -0
  164. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/analyzers/ast_grep_rules/security/scala.yaml +0 -0
  165. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/analyzers/ast_grep_rules/security/tsx.yaml +0 -0
  166. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/analyzers/ast_grep_rules/security/typescript.yaml +0 -0
  167. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/analyzers/ast_grep_rules/smells/c.yaml +0 -0
  168. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/analyzers/ast_grep_rules/smells/cpp.yaml +0 -0
  169. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/analyzers/ast_grep_rules/smells/csharp.yaml +0 -0
  170. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/analyzers/ast_grep_rules/smells/dart.yaml +0 -0
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  337. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/services/graph_diff.py +0 -0
  338. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/services/provenance.py +0 -0
  339. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/services/resource_cleanup.py +0 -0
  340. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/sql_names.py +0 -0
  341. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/stack/__init__.py +0 -0
  342. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/structural_delta.py +0 -0
  343. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/taint.py +0 -0
  344. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/tools/__init__.py +0 -0
  345. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/tools/ast_grep_service.py +0 -0
  346. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/tools/directory_lister.py +0 -0
  347. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/tools/duplicate_detection.py +0 -0
  348. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/tools/file_reader.py +0 -0
  349. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/tools/file_writer.py +0 -0
  350. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/tools/graph_rerank.py +0 -0
  351. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/tools/research.py +0 -0
  352. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/tools/structural_editor.py +0 -0
  353. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/tools/structural_search.py +0 -0
  354. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/tools/tool_descriptions.py +0 -0
  355. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/tools/web_search.py +0 -0
  356. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/trace/__init__.py +0 -0
  357. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/trace/cpuprofile.py +0 -0
  358. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/trace/dispatch_site.py +0 -0
  359. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/trace/ebpf_pprof.py +0 -0
  360. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/trace/ingest.py +0 -0
  361. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/trace/pytest_plugin.py +0 -0
  362. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/trace/records.py +0 -0
  363. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/trace/resolution.py +0 -0
  364. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/trace/rust_pprof.py +0 -0
  365. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/trace/sourcemap.py +0 -0
  366. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/trace/speedscope.py +0 -0
  367. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/trace/tracer.py +0 -0
  368. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/trace/xdebug.py +0 -0
  369. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/utils/__init__.py +0 -0
  370. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/utils/dependencies.py +0 -0
  371. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/utils/fqn_resolver.py +0 -0
  372. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/utils/qn_markers.py +0 -0
  373. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/utils/rich_markdown.py +0 -0
  374. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/utils/source_extraction.py +0 -0
  375. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/workspaces/__init__.py +0 -0
  376. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codebase_rag/workspaces/constants.py +0 -0
  377. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codec/__init__.py +0 -0
  378. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codec/schema_pb2.py +0 -0
  379. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/codec/schema_pb2.pyi +0 -0
  380. {code_graph_rag-0.0.996 → code_graph_rag-0.1.38}/setup.cfg +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: code-graph-rag
3
- Version: 0.0.996
3
+ Version: 0.1.38
4
4
  Summary: The ultimate RAG for your monorepo. Query, understand, and edit multi-language codebases with the power of AI and knowledge graphs
5
5
  License-Expression: MIT
6
6
  Keywords: rag,retrieval-augmented-generation,knowledge-graph,code-analysis,tree-sitter,mcp,mcp-server,llm,graph-database,semantic-search,codebase,memgraph,developer-tools,monorepo
@@ -20,14 +20,14 @@ Description-Content-Type: text/markdown
20
20
  License-File: LICENSE
21
21
  Requires-Dist: loguru>=0.7.3
22
22
  Requires-Dist: mcp>=1.28.1
23
- Requires-Dist: pydantic-ai>=2.0.0
23
+ Requires-Dist: pydantic-ai-slim[anthropic,google,openai]>=2.0.0
24
24
  Requires-Dist: pydantic-settings>=2.12.0
25
25
  Requires-Dist: pymgclient>=1.5.1
26
26
  Requires-Dist: python-dotenv>=1.2.1
27
27
  Requires-Dist: tiktoken>=0.12.0
28
- Requires-Dist: toml>=0.10.2
28
+ Requires-Dist: tomli-w>=1.2.0
29
29
  Requires-Dist: tree-sitter-python>=0.25.0
30
- Requires-Dist: tree-sitter==0.25.2
30
+ Requires-Dist: tree-sitter==0.26.0
31
31
  Requires-Dist: watchdog>=6.0.0
32
32
  Requires-Dist: typer>=0.21.1
33
33
  Requires-Dist: rich>=14.2.0
@@ -67,13 +67,13 @@ Requires-Dist: tree-sitter-cpp>=0.23.0; extra == "treesitter-full"
67
67
  Requires-Dist: tree-sitter-lua>=0.0.19; extra == "treesitter-full"
68
68
  Requires-Dist: tree-sitter-php>=0.24.1; extra == "treesitter-full"
69
69
  Requires-Dist: tree-sitter-c-sharp>=0.23.5; extra == "treesitter-full"
70
- Requires-Dist: tree-sitter-dart>=0.1.0; extra == "treesitter-full"
70
+ Requires-Dist: tree-sitter-dart==0.1.0; extra == "treesitter-full"
71
71
  Requires-Dist: tree-sitter-sql>=0.3.11; extra == "treesitter-full"
72
72
  Requires-Dist: tree-sitter-markdown>=0.5.1; extra == "treesitter-full"
73
73
  Provides-Extra: semantic
74
74
  Requires-Dist: qdrant-client>=1.9.0; extra == "semantic"
75
75
  Requires-Dist: torch>=2.6.0; extra == "semantic"
76
- Requires-Dist: transformers>=4.0.0; extra == "semantic"
76
+ Requires-Dist: transformers>=5.0.0; extra == "semantic"
77
77
  Provides-Extra: milvus
78
78
  Requires-Dist: pymilvus[milvus-lite]>=3.0.0; extra == "milvus"
79
79
  Provides-Extra: ast-grep
@@ -142,12 +142,23 @@ uploads and GitHub Release binaries land on an every-50 cadence, so the tag on `
142
142
  usually runs ahead of the published version. A security fix is the exception: it
143
143
  ships immediately rather than waiting for the cadence.
144
144
 
145
- To run code newer than the latest release, install from git:
145
+ To run code newer than the latest release, install from git with uv:
146
146
 
147
147
  ```bash
148
- pip install "code-graph-rag[treesitter-full] @ git+https://github.com/vitali87/code-graph-rag@main"
148
+ uv tool install "code-graph-rag[treesitter-full] @ git+https://github.com/vitali87/code-graph-rag@main"
149
149
  ```
150
150
 
151
+ Use uv for this: it applies the project's `[tool.uv.sources]`, which build the C
152
+ and C++ grammars from forks that keep the declarations upstream drops after a
153
+ `#define` whose value contains a block comment. `pip` ignores those sources and
154
+ installs the upstream grammars.
155
+
156
+ To upgrade, rerun the install with `--upgrade` and the extras you chose, for
157
+ example `pip install --upgrade 'code-graph-rag[treesitter-full]'`. With uv or pipx,
158
+ run `uv tool upgrade code-graph-rag` or `pipx upgrade code-graph-rag` instead; see the
159
+ [installation guide](https://github.com/vitali87/code-graph-rag/blob/main/docs/getting-started/installation.md#upgrade)
160
+ for git installs and the other methods.
161
+
151
162
  ### Prerequisites
152
163
 
153
164
  - Python 3.12+
@@ -57,12 +57,23 @@ uploads and GitHub Release binaries land on an every-50 cadence, so the tag on `
57
57
  usually runs ahead of the published version. A security fix is the exception: it
58
58
  ships immediately rather than waiting for the cadence.
59
59
 
60
- To run code newer than the latest release, install from git:
60
+ To run code newer than the latest release, install from git with uv:
61
61
 
62
62
  ```bash
63
- pip install "code-graph-rag[treesitter-full] @ git+https://github.com/vitali87/code-graph-rag@main"
63
+ uv tool install "code-graph-rag[treesitter-full] @ git+https://github.com/vitali87/code-graph-rag@main"
64
64
  ```
65
65
 
66
+ Use uv for this: it applies the project's `[tool.uv.sources]`, which build the C
67
+ and C++ grammars from forks that keep the declarations upstream drops after a
68
+ `#define` whose value contains a block comment. `pip` ignores those sources and
69
+ installs the upstream grammars.
70
+
71
+ To upgrade, rerun the install with `--upgrade` and the extras you chose, for
72
+ example `pip install --upgrade 'code-graph-rag[treesitter-full]'`. With uv or pipx,
73
+ run `uv tool upgrade code-graph-rag` or `pipx upgrade code-graph-rag` instead; see the
74
+ [installation guide](https://github.com/vitali87/code-graph-rag/blob/main/docs/getting-started/installation.md#upgrade)
75
+ for git installs and the other methods.
76
+
66
77
  ### Prerequisites
67
78
 
68
79
  - Python 3.12+
@@ -45,15 +45,23 @@
45
45
  Code-Graph-RAG parses a multi-language codebase with Tree-sitter, sharpened by compiler-grade frontends and runtime traces where available, builds a knowledge graph of its structure in Memgraph, and lets you query, edit, and optimise that code in plain English. It works across a monorepo of mixed languages under one unified graph schema.
46
46
 
47
47
  <p align="center">
48
- <img src="./assets/demo.gif" alt="demo">
48
+ <b>1. Index:</b> <code>cgr start --update-graph</code> parses a repository into a knowledge graph (sped up)
49
+ </p>
50
+ <p align="center">
51
+ <img src="./assets/demo-indexing.gif" alt="cgr parsing the code-graph-rag repository into a Memgraph knowledge graph, then printing node and relationship counts">
52
+ </p>
53
+
54
+ <p align="center">
55
+ <b>2. Ask:</b> <code>cgr start</code> answers questions and edits code, grounded in that graph
56
+ </p>
57
+ <p align="center">
58
+ <img src="./assets/demo.gif" alt="cgr agent answering questions about the indexed repository">
49
59
  </p>
50
60
 
51
61
  ## Latest News 🔥
52
62
 
53
63
  <!-- SECTION:latest_news -->
54
- - **Code Generation**: Split Cypher response cleaning and AST-grep rule validation into smaller, more manageable helpers for improved clarity and maintainability.
55
- - **Scripting Improvements**: Resolved an issue where closed pull request run associations were incorrectly reported as missing, and improved error reporting in scripts to avoid over-claiming failing checks.
56
- - **Data Handling**: Enhanced the handling of CONTAINS_SECTION in the double's module subtree and refined snippet lookup to project the matched node's own path.
64
+ - **Incremental Indexing**: Improved handling of same-stem sibling matches and skipped EXPOSES cleanups during incremental updates.
57
65
  <!-- /SECTION:latest_news -->
58
66
 
59
67
  See [NEWS.md](NEWS.md) for the full history.
@@ -126,6 +134,8 @@ To run code newer than the latest release, install from git:
126
134
  uv tool install "code-graph-rag[treesitter-full,semantic] @ git+https://github.com/vitali87/code-graph-rag@main"
127
135
  ```
128
136
 
137
+ To upgrade an existing install, run `uv tool upgrade code-graph-rag` (with pipx, `pipx upgrade code-graph-rag`, or `pipx reinstall code-graph-rag` for a git install). [Upgrade](docs/getting-started/installation.md#upgrade) covers the other install methods.
138
+
129
139
  You also need Python 3.12+, Docker (for Memgraph), `cmake`, and `ripgrep`. Full prerequisites, source installs, and environment setup are in the [Installation](docs/getting-started/installation.md) guide.
130
140
 
131
141
  > [!NOTE]
@@ -212,3 +222,5 @@ For issues or questions, check the [Troubleshooting](docs/advanced/troubleshooti
212
222
  ## License
213
223
 
214
224
  MIT. See [LICENSE](LICENSE).
225
+
226
+ Third-party components and their licences are credited on the [Credits page](https://docs.code-graph-rag.com/credits/).
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: code-graph-rag
3
- Version: 0.0.996
3
+ Version: 0.1.38
4
4
  Summary: The ultimate RAG for your monorepo. Query, understand, and edit multi-language codebases with the power of AI and knowledge graphs
5
5
  License-Expression: MIT
6
6
  Keywords: rag,retrieval-augmented-generation,knowledge-graph,code-analysis,tree-sitter,mcp,mcp-server,llm,graph-database,semantic-search,codebase,memgraph,developer-tools,monorepo
@@ -20,14 +20,14 @@ Description-Content-Type: text/markdown
20
20
  License-File: LICENSE
21
21
  Requires-Dist: loguru>=0.7.3
22
22
  Requires-Dist: mcp>=1.28.1
23
- Requires-Dist: pydantic-ai>=2.0.0
23
+ Requires-Dist: pydantic-ai-slim[anthropic,google,openai]>=2.0.0
24
24
  Requires-Dist: pydantic-settings>=2.12.0
25
25
  Requires-Dist: pymgclient>=1.5.1
26
26
  Requires-Dist: python-dotenv>=1.2.1
27
27
  Requires-Dist: tiktoken>=0.12.0
28
- Requires-Dist: toml>=0.10.2
28
+ Requires-Dist: tomli-w>=1.2.0
29
29
  Requires-Dist: tree-sitter-python>=0.25.0
30
- Requires-Dist: tree-sitter==0.25.2
30
+ Requires-Dist: tree-sitter==0.26.0
31
31
  Requires-Dist: watchdog>=6.0.0
32
32
  Requires-Dist: typer>=0.21.1
33
33
  Requires-Dist: rich>=14.2.0
@@ -67,13 +67,13 @@ Requires-Dist: tree-sitter-cpp>=0.23.0; extra == "treesitter-full"
67
67
  Requires-Dist: tree-sitter-lua>=0.0.19; extra == "treesitter-full"
68
68
  Requires-Dist: tree-sitter-php>=0.24.1; extra == "treesitter-full"
69
69
  Requires-Dist: tree-sitter-c-sharp>=0.23.5; extra == "treesitter-full"
70
- Requires-Dist: tree-sitter-dart>=0.1.0; extra == "treesitter-full"
70
+ Requires-Dist: tree-sitter-dart==0.1.0; extra == "treesitter-full"
71
71
  Requires-Dist: tree-sitter-sql>=0.3.11; extra == "treesitter-full"
72
72
  Requires-Dist: tree-sitter-markdown>=0.5.1; extra == "treesitter-full"
73
73
  Provides-Extra: semantic
74
74
  Requires-Dist: qdrant-client>=1.9.0; extra == "semantic"
75
75
  Requires-Dist: torch>=2.6.0; extra == "semantic"
76
- Requires-Dist: transformers>=4.0.0; extra == "semantic"
76
+ Requires-Dist: transformers>=5.0.0; extra == "semantic"
77
77
  Provides-Extra: milvus
78
78
  Requires-Dist: pymilvus[milvus-lite]>=3.0.0; extra == "milvus"
79
79
  Provides-Extra: ast-grep
@@ -142,12 +142,23 @@ uploads and GitHub Release binaries land on an every-50 cadence, so the tag on `
142
142
  usually runs ahead of the published version. A security fix is the exception: it
143
143
  ships immediately rather than waiting for the cadence.
144
144
 
145
- To run code newer than the latest release, install from git:
145
+ To run code newer than the latest release, install from git with uv:
146
146
 
147
147
  ```bash
148
- pip install "code-graph-rag[treesitter-full] @ git+https://github.com/vitali87/code-graph-rag@main"
148
+ uv tool install "code-graph-rag[treesitter-full] @ git+https://github.com/vitali87/code-graph-rag@main"
149
149
  ```
150
150
 
151
+ Use uv for this: it applies the project's `[tool.uv.sources]`, which build the C
152
+ and C++ grammars from forks that keep the declarations upstream drops after a
153
+ `#define` whose value contains a block comment. `pip` ignores those sources and
154
+ installs the upstream grammars.
155
+
156
+ To upgrade, rerun the install with `--upgrade` and the extras you chose, for
157
+ example `pip install --upgrade 'code-graph-rag[treesitter-full]'`. With uv or pipx,
158
+ run `uv tool upgrade code-graph-rag` or `pipx upgrade code-graph-rag` instead; see the
159
+ [installation guide](https://github.com/vitali87/code-graph-rag/blob/main/docs/getting-started/installation.md#upgrade)
160
+ for git installs and the other methods.
161
+
151
162
  ### Prerequisites
152
163
 
153
164
  - Python 3.12+
@@ -10,11 +10,13 @@ code_graph_rag.egg-info/entry_points.txt
10
10
  code_graph_rag.egg-info/requires.txt
11
11
  code_graph_rag.egg-info/top_level.txt
12
12
  codebase_rag/__init__.py
13
+ codebase_rag/_cli_env.py
13
14
  codebase_rag/ast_cache.py
14
15
  codebase_rag/capture.py
15
16
  codebase_rag/cgr_state.py
16
17
  codebase_rag/cli.py
17
18
  codebase_rag/cli_help.py
19
+ codebase_rag/cli_runtime.py
18
20
  codebase_rag/config.py
19
21
  codebase_rag/console_marks.py
20
22
  codebase_rag/context_pruning.py
@@ -355,6 +357,7 @@ codebase_rag/trace/xdebug.py
355
357
  codebase_rag/utils/__init__.py
356
358
  codebase_rag/utils/dependencies.py
357
359
  codebase_rag/utils/fqn_resolver.py
360
+ codebase_rag/utils/json_io.py
358
361
  codebase_rag/utils/path_utils.py
359
362
  codebase_rag/utils/qn_markers.py
360
363
  codebase_rag/utils/rich_markdown.py
@@ -1,13 +1,13 @@
1
1
  loguru>=0.7.3
2
2
  mcp>=1.28.1
3
- pydantic-ai>=2.0.0
3
+ pydantic-ai-slim[anthropic,google,openai]>=2.0.0
4
4
  pydantic-settings>=2.12.0
5
5
  pymgclient>=1.5.1
6
6
  python-dotenv>=1.2.1
7
7
  tiktoken>=0.12.0
8
- toml>=0.10.2
8
+ tomli-w>=1.2.0
9
9
  tree-sitter-python>=0.25.0
10
- tree-sitter==0.25.2
10
+ tree-sitter==0.26.0
11
11
  watchdog>=6.0.0
12
12
  typer>=0.21.1
13
13
  rich>=14.2.0
@@ -39,7 +39,7 @@ jedi>=0.19
39
39
  [semantic]
40
40
  qdrant-client>=1.9.0
41
41
  torch>=2.6.0
42
- transformers>=4.0.0
42
+ transformers>=5.0.0
43
43
 
44
44
  [test]
45
45
  jedi>=0.19
@@ -66,6 +66,6 @@ tree-sitter-cpp>=0.23.0
66
66
  tree-sitter-lua>=0.0.19
67
67
  tree-sitter-php>=0.24.1
68
68
  tree-sitter-c-sharp>=0.23.5
69
- tree-sitter-dart>=0.1.0
69
+ tree-sitter-dart==0.1.0
70
70
  tree-sitter-sql>=0.3.11
71
71
  tree-sitter-markdown>=0.5.1
@@ -0,0 +1,14 @@
1
+ """Process defaults for the `cgr` command, applied before any settings load.
2
+
3
+ `codebase_rag.cli` imports this first among its own modules. pydantic-ai
4
+ depends on logfire, whose pydantic plugin pydantic loads the first time a
5
+ model or settings class is built; that imports OpenTelemetry and friends
6
+ (~0.13 s) on every start, and cgr never uses logfire (issue #2253). The
7
+ default applies to the CLI process only, so an application embedding
8
+ codebase_rag keeps its own plugins. A value the user set, including an empty
9
+ one that keeps every plugin, is left alone.
10
+ """
11
+
12
+ import os
13
+
14
+ os.environ.setdefault("PYDANTIC_DISABLE_PLUGINS", "logfire-plugin")