code-agnostic 0.3.14__tar.gz → 0.3.16__tar.gz

{code_agnostic-0.3.14 → code_agnostic-0.3.16}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: code-agnostic
-Version: 0.3.14
+Version: 0.3.16
 Summary: Centralized hub for LLM coding config: MCP, skills, rules, and agents.
 Requires-Python: >=3.10
 Description-Content-Type: text/markdown
@@ -171,6 +171,7 @@ If managed outputs need repair after an apply, restore the active synced revisio
 ```bash
 code-agnostic restore
 code-agnostic restore -w myproject
+code-agnostic restore --project myproject
 ```
 
 ### MCP management
@@ -179,11 +180,14 @@ Add, remove, and list MCP servers without editing JSON by hand.
 
 ```bash
 code-agnostic mcp add github --command npx --args @modelcontextprotocol/server-github --env GITHUB_TOKEN
+code-agnostic mcp add local-docs --command uvx --args docs-mcp --cwd ~/code/docs
 code-agnostic mcp list
 code-agnostic mcp remove github
 ```
 
 Env vars without a value (`--env GITHUB_TOKEN`) are stored as `${GITHUB_TOKEN}` references.
+Cursor-local MCP `envFile` can be represented in source config and is reported
+as lossy for targets that do not support environment files.
 
 ### Rules with metadata
 
@@ -260,12 +264,14 @@ Global skills live under `~/.config/code-agnostic/skills`. Workspace-local
 skills live under `~/.config/code-agnostic/workspaces/<name>/skills` and can be
 inspected with `code-agnostic skills list -w <name>`. Project-local skills live
 under `~/.config/code-agnostic/projects/<name>/skills` and are generated into
-the registered project directory by `plan` / `apply`. Codex generated skill
-outputs are written to `~/.agents/skills`, while Codex agents and config remain
-under `CODEX_HOME` when set, defaulting to `~/.codex`. Claude Code generated
-skills and agents are written under `~/.claude/skills` and `~/.claude/agents`,
-with workspace/project copies under repo-local `.claude/skills` and
-`.claude/agents`.
+the registered project directory by `plan` / `apply`. The current first-class
+list/remove commands cover global and workspace scopes; project skill inventory
+and removal are not supported yet, and `code-agnostic projects list` only shows
+a coarse `[skills]` marker today. Codex generated skill outputs are written to
+`~/.agents/skills`, while Codex agents and config remain under `CODEX_HOME` when
+set, defaulting to `~/.codex`. Claude Code generated skills and agents are
+written under `~/.claude/skills` and `~/.claude/agents`, with workspace/project
+copies under repo-local `.claude/skills` and `.claude/agents`.
 
 If a target app discovers user-created repo-local skill folders such as `.agents/skills`, `.opencode/skills`, or `.claude/skills`, treat those as unmanaged app inputs unless they were generated from `code-agnostic` project source. Workspace and project sync write only the exact generated paths recorded in their `.sync-state.json` files.
 
@@ -317,7 +323,8 @@ code-agnostic import plan -a codex -i    # interactive TUI picker
 only the selected sections. Conflicts are skipped by default, so rerun with
 `--on-conflict overwrite` only after reviewing the preview. Use `--include`,
 `--exclude`, `--source-root`, and `--follow-symlinks` to narrow what gets
-imported.
+imported. `--source-root` means the source app config root to read from, not the
+`code-agnostic` hub root.
 
 ### CLI conventions
 
@@ -349,7 +356,8 @@ The compiler migration is documented in:
 - [x] Per-workspace git-exclude customization
 - [x] Interactive TUI for import selection
 - [x] Claude Code support
-- [ ] Project-scoped skill installs and sync
+- [x] Project-scoped skill installs and sync
+- [ ] Project-scoped skill inventory and remove commands
 - [ ] `rules add` / `skills add` / `agents add` commands (open `$EDITOR` with template)
 - [ ] Shell auto-complete
 - [ ] Full TUI mode (command palette + menus)

{code_agnostic-0.3.14 → code_agnostic-0.3.16}/README.md

@@ -146,6 +146,7 @@ If managed outputs need repair after an apply, restore the active synced revisio
 ```bash
 code-agnostic restore
 code-agnostic restore -w myproject
+code-agnostic restore --project myproject
 ```
 
 ### MCP management
@@ -154,11 +155,14 @@ Add, remove, and list MCP servers without editing JSON by hand.
 
 ```bash
 code-agnostic mcp add github --command npx --args @modelcontextprotocol/server-github --env GITHUB_TOKEN
+code-agnostic mcp add local-docs --command uvx --args docs-mcp --cwd ~/code/docs
 code-agnostic mcp list
 code-agnostic mcp remove github
 ```
 
 Env vars without a value (`--env GITHUB_TOKEN`) are stored as `${GITHUB_TOKEN}` references.
+Cursor-local MCP `envFile` can be represented in source config and is reported
+as lossy for targets that do not support environment files.
 
 ### Rules with metadata
 
@@ -235,12 +239,14 @@ Global skills live under `~/.config/code-agnostic/skills`. Workspace-local
 skills live under `~/.config/code-agnostic/workspaces/<name>/skills` and can be
 inspected with `code-agnostic skills list -w <name>`. Project-local skills live
 under `~/.config/code-agnostic/projects/<name>/skills` and are generated into
-the registered project directory by `plan` / `apply`. Codex generated skill
-outputs are written to `~/.agents/skills`, while Codex agents and config remain
-under `CODEX_HOME` when set, defaulting to `~/.codex`. Claude Code generated
-skills and agents are written under `~/.claude/skills` and `~/.claude/agents`,
-with workspace/project copies under repo-local `.claude/skills` and
-`.claude/agents`.
+the registered project directory by `plan` / `apply`. The current first-class
+list/remove commands cover global and workspace scopes; project skill inventory
+and removal are not supported yet, and `code-agnostic projects list` only shows
+a coarse `[skills]` marker today. Codex generated skill outputs are written to
+`~/.agents/skills`, while Codex agents and config remain under `CODEX_HOME` when
+set, defaulting to `~/.codex`. Claude Code generated skills and agents are
+written under `~/.claude/skills` and `~/.claude/agents`, with workspace/project
+copies under repo-local `.claude/skills` and `.claude/agents`.
 
 If a target app discovers user-created repo-local skill folders such as `.agents/skills`, `.opencode/skills`, or `.claude/skills`, treat those as unmanaged app inputs unless they were generated from `code-agnostic` project source. Workspace and project sync write only the exact generated paths recorded in their `.sync-state.json` files.
 
@@ -292,7 +298,8 @@ code-agnostic import plan -a codex -i    # interactive TUI picker
 only the selected sections. Conflicts are skipped by default, so rerun with
 `--on-conflict overwrite` only after reviewing the preview. Use `--include`,
 `--exclude`, `--source-root`, and `--follow-symlinks` to narrow what gets
-imported.
+imported. `--source-root` means the source app config root to read from, not the
+`code-agnostic` hub root.
 
 ### CLI conventions
 
@@ -324,7 +331,8 @@ The compiler migration is documented in:
 - [x] Per-workspace git-exclude customization
 - [x] Interactive TUI for import selection
 - [x] Claude Code support
-- [ ] Project-scoped skill installs and sync
+- [x] Project-scoped skill installs and sync
+- [ ] Project-scoped skill inventory and remove commands
 - [ ] `rules add` / `skills add` / `agents add` commands (open `$EDITOR` with template)
 - [ ] Shell auto-complete
 - [ ] Full TUI mode (command palette + menus)

{code_agnostic-0.3.14 → code_agnostic-0.3.16}/code_agnostic/__init__.py

@@ -1,3 +1,3 @@
 __all__ = ["__version__"]
 
-__version__ = "0.3.14"
+__version__ = "0.3.16"

code_agnostic-0.3.16/code_agnostic/agents/compilers.py

@@ -0,0 +1,87 @@
+"""Per-editor agent compilers."""
+
+from __future__ import annotations
+
+from abc import ABC, abstractmethod
+from typing import Any
+
+import yaml
+
+from code_agnostic.agents.claude import serialize_claude_agent
+from code_agnostic.agents.codex import serialize_codex_agent
+from code_agnostic.agents.models import Agent
+from code_agnostic.agents.opencode import serialize_opencode_agent
+from code_agnostic.errors import InvalidConfigSchemaError
+
+_CURSOR_AGENT_FRONTMATTER_KEYS = frozenset(
+    {"name", "description", "model", "readonly", "is_background"}
+)
+
+
+class IAgentCompiler(ABC):
+    @abstractmethod
+    def compile(self, agent: Agent) -> str:
+        """Return compiled agent content for target editor."""
+
+
+class OpenCodeAgentCompiler(IAgentCompiler):
+    """Cross-compile for OpenCode agents."""
+
+    def compile(self, agent: Agent) -> str:
+        return serialize_opencode_agent(agent)
+
+
+class CursorAgentCompiler(IAgentCompiler):
+    """Cross-compile for Cursor subagents."""
+
+    def compile(self, agent: Agent) -> str:
+        return _serialize_cursor_agent(agent)
+
+
+def _serialize_cursor_agent(agent: Agent) -> str:
+    overrides = dict(agent.metadata.app_overrides.get("cursor", {}))
+    fm: dict[str, Any] = {}
+    if agent.metadata.name:
+        fm["name"] = agent.metadata.name
+    if agent.metadata.description:
+        fm["description"] = agent.metadata.description
+
+    model = overrides.pop("model", agent.metadata.model)
+    if model:
+        fm["model"] = model
+
+    if agent.metadata.tools.write is False:
+        fm["readonly"] = True
+
+    for key in sorted(overrides):
+        if key not in _CURSOR_AGENT_FRONTMATTER_KEYS:
+            allowed = ", ".join(sorted(_CURSOR_AGENT_FRONTMATTER_KEYS))
+            raise InvalidConfigSchemaError(
+                agent.source_path,
+                f"x-cursor.{key} is not supported in cursor agent "
+                f"frontmatter; allowed keys: {allowed}",
+            )
+        fm[key] = overrides[key]
+
+    parts: list[str] = []
+    if fm:
+        parts.append("---")
+        parts.append(yaml.dump(fm, default_flow_style=False, sort_keys=False).rstrip())
+        parts.append("---")
+        parts.append("")
+    parts.append(agent.content)
+    return "\n".join(parts)
+
+
+class CodexAgentCompiler(IAgentCompiler):
+    """Cross-compile for Codex subagents."""
+
+    def compile(self, agent: Agent) -> str:
+        return serialize_codex_agent(agent)
+
+
+class ClaudeAgentCompiler(IAgentCompiler):
+    """Cross-compile for Claude Code subagents."""
+
+    def compile(self, agent: Agent) -> str:
+        return serialize_claude_agent(agent)

{code_agnostic-0.3.14 → code_agnostic-0.3.16}/code_agnostic/apps/claude/mapper.py

@@ -40,6 +40,9 @@ class ClaudeMCPMapper(IAppMCPMapper):
                     type=MCPServerType.STDIO,
                     command=command,
                     args=_as_list(server.get("args")),
+                    cwd=server.get("cwd")
+                    if isinstance(server.get("cwd"), str)
+                    else None,
                     env=_as_str_dict(server.get("env")),
                     headers=_as_str_dict(server.get("headers")),
                     timeout_ms=_timeout(server.get("timeout")),
@@ -70,6 +73,8 @@ class ClaudeMCPMapper(IAppMCPMapper):
                 out["command"] = server.command
                 if server.args:
                     out["args"] = deepcopy(server.args)
+                if server.cwd is not None:
+                    out["cwd"] = server.cwd
             else:
                 if not server.url:
                     continue

{code_agnostic-0.3.14 → code_agnostic-0.3.16}/code_agnostic/apps/codex/mapper.py

@@ -1,9 +1,11 @@
 import re
 from copy import deepcopy
+from pathlib import Path
 from typing import Any
 
 from code_agnostic.apps.common.interfaces.mapper import IAppMCPMapper
 from code_agnostic.apps.common.models import MCPServerDTO, MCPServerType
+from code_agnostic.errors import InvalidConfigSchemaError
 
 _ENV_PATTERN = re.compile(r"^\$\{(?:env:)?([A-Z_][A-Z0-9_]*)\}$")
 _BEARER_PATTERN = re.compile(r"^Bearer\s+\$\{(?:env:)?([A-Z_][A-Z0-9_]*)\}$")
@@ -34,6 +36,29 @@ def _encode_tool_timeout(timeout_ms: int) -> int | float:
     return int(seconds) if timeout_ms % 1000 == 0 else seconds
 
 
+def _codex_env_var_name(server_name: str, entry: Any) -> str | None:
+    if isinstance(entry, str):
+        return entry
+    if not isinstance(entry, dict):
+        return None
+
+    name = entry.get("name")
+    if not isinstance(name, str):
+        return None
+
+    source = entry.get("source", "local")
+    if source in (None, "local"):
+        return name
+
+    detail = (
+        "Codex env_vars entries with source = 'remote' cannot be imported "
+        "into common MCP config without losing remote-executor semantics"
+        if source == "remote"
+        else f"Unsupported Codex env_vars source: {source!r}"
+    )
+    raise InvalidConfigSchemaError(Path(f"mcp_servers.{server_name}.env_vars"), detail)
+
+
 class CodexMCPMapper(IAppMCPMapper):
     def to_common(self, payload: dict[str, Any]) -> dict[str, MCPServerDTO]:
         mapped: dict[str, MCPServerDTO] = {}
@@ -49,8 +74,9 @@ class CodexMCPMapper(IAppMCPMapper):
             env: dict[str, str] = {}
             env_vars = server.get("env_vars")
             if isinstance(env_vars, list):
-                for key in env_vars:
-                    if isinstance(key, str):
+                for entry in env_vars:
+                    key = _codex_env_var_name(name, entry)
+                    if key is not None:
                         env[key] = f"${{{key}}}"
             env_table = server.get("env")
             if isinstance(env_table, dict):
@@ -82,6 +108,7 @@ class CodexMCPMapper(IAppMCPMapper):
                 args=[str(item) for item in server.get("args", [])]
                 if isinstance(server.get("args"), list)
                 else [],
+                cwd=server.get("cwd") if isinstance(server.get("cwd"), str) else None,
                 url=url if isinstance(url, str) else None,
                 timeout_ms=_coerce_timeout_ms(server.get("tool_timeout_sec")),
                 headers=headers,
@@ -100,6 +127,8 @@ class CodexMCPMapper(IAppMCPMapper):
                 out["command"] = server.command
                 if server.args:
                     out["args"] = deepcopy(server.args)
+                if server.cwd is not None:
+                    out["cwd"] = server.cwd
             else:
                 if not server.url:
                     continue

{code_agnostic-0.3.14 → code_agnostic-0.3.16}/code_agnostic/apps/codex/schema.json

@@ -210,6 +210,22 @@
       "additionalProperties": false,
       "description": "Default settings that apply to all apps.",
       "properties": {
+        "approvals_reviewer": {
+          "allOf": [
+            {
+              "$ref": "#/definitions/ApprovalsReviewer"
+            }
+          ],
+          "description": "Reviewer for approval prompts unless overridden by per-app settings."
+        },
+        "default_tools_approval_mode": {
+          "allOf": [
+            {
+              "$ref": "#/definitions/AppToolApproval"
+            }
+          ],
+          "description": "Approval mode for tools unless overridden by per-app or per-tool settings."
+        },
         "destructive_enabled": {
           "description": "Whether tools with `destructive_hint = true` are allowed by default.",
           "type": "boolean"
@@ -346,6 +362,13 @@
     "CodeModeConfigToml": {
       "additionalProperties": false,
       "properties": {
+        "direct_only_tool_namespaces": {
+          "description": "Exact tool namespaces to expose only as direct model tools. These tools bypass deferral, remain top-level in code-mode-only sessions, and are omitted from the nested code-mode tool surface.",
+          "items": {
+            "type": "string"
+          },
+          "type": "array"
+        },
         "enabled": {
           "type": "boolean"
         },
@@ -576,18 +599,30 @@
             "request_rule": {
               "type": "boolean"
             },
+            "resize_all_images": {
+              "type": "boolean"
+            },
             "responses_websockets": {
               "type": "boolean"
             },
             "responses_websockets_v2": {
               "type": "boolean"
             },
+            "rollout_budget": {
+              "$ref": "#/definitions/FeatureToml_for_RolloutBudgetConfigToml"
+            },
+            "respect_system_proxy": {
+              "type": "boolean"
+            },
             "runtime_metrics": {
               "type": "boolean"
             },
             "search_tool": {
               "type": "boolean"
             },
+            "secret_auth_storage": {
+              "type": "boolean"
+            },
             "shell_snapshot": {
               "type": "boolean"
             },
@@ -603,6 +638,9 @@
             "skill_mcp_dependency_install": {
               "type": "boolean"
             },
+            "sleep_tool": {
+              "type": "boolean"
+            },
             "sqlite": {
               "type": "boolean"
             },
@@ -621,6 +659,9 @@
             "terminal_visualization_instructions": {
               "type": "boolean"
             },
+            "token_budget": {
+              "type": "boolean"
+            },
             "tool_call_mcp_elicitation": {
               "type": "boolean"
             },
@@ -870,6 +911,16 @@
         }
       ]
     },
+    "FeatureToml_for_RolloutBudgetConfigToml": {
+      "anyOf": [
+        {
+          "type": "boolean"
+        },
+        {
+          "$ref": "#/definitions/RolloutBudgetConfigToml"
+        }
+      ]
+    },
     "FeedbackConfigToml": {
       "additionalProperties": false,
       "properties": {
@@ -2436,6 +2487,13 @@
       },
       "type": "object"
     },
+    "RealtimeConversationArchitecture": {
+      "enum": [
+        "realtimeapi",
+        "avas"
+      ],
+      "type": "string"
+    },
     "RealtimeConversationVersion": {
       "enum": [
         "v1",
@@ -2446,6 +2504,9 @@
     "RealtimeToml": {
       "additionalProperties": false,
       "properties": {
+        "architecture": {
+          "$ref": "#/definitions/RealtimeConversationArchitecture"
+        },
         "transport": {
           "$ref": "#/definitions/RealtimeTransport"
         },
@@ -2524,6 +2585,35 @@
         }
       ]
     },
+    "RolloutBudgetConfigToml": {
+      "additionalProperties": false,
+      "properties": {
+        "enabled": {
+          "type": "boolean"
+        },
+        "limit_tokens": {
+          "format": "int64",
+          "minimum": 1.0,
+          "type": "integer"
+        },
+        "prefill_token_weight": {
+          "format": "double",
+          "minimum": 0.0,
+          "type": "number"
+        },
+        "reminder_interval_tokens": {
+          "format": "int64",
+          "minimum": 1.0,
+          "type": "integer"
+        },
+        "sampling_token_weight": {
+          "format": "double",
+          "minimum": 0.0,
+          "type": "number"
+        }
+      },
+      "type": "object"
+    },
     "SandboxMode": {
       "enum": [
         "read-only",
@@ -4482,6 +4572,10 @@
       "description": "Experimental / do not use. Replaces the built-in realtime start instructions inserted into developer messages when realtime becomes active.",
       "type": "string"
     },
+    "experimental_realtime_webrtc_call_base_url": {
+      "description": "Experimental / do not use. Overrides only the WebRTC realtime call creation base URL. This is separate from `experimental_realtime_ws_base_url` because WebRTC call creation is HTTP, while sideband control is websocket.",
+      "type": "string"
+    },
     "experimental_realtime_ws_backend_prompt": {
       "description": "Experimental / do not use. Overrides only the realtime conversation websocket transport instructions (the `Op::RealtimeConversation` `/ws` session.update instructions) without changing normal prompts.",
       "type": "string"
@@ -4708,18 +4802,30 @@
         "request_rule": {
           "type": "boolean"
         },
+        "resize_all_images": {
+          "type": "boolean"
+        },
         "responses_websockets": {
           "type": "boolean"
         },
         "responses_websockets_v2": {
           "type": "boolean"
         },
+        "rollout_budget": {
+          "$ref": "#/definitions/FeatureToml_for_RolloutBudgetConfigToml"
+        },
+        "respect_system_proxy": {
+          "type": "boolean"
+        },
         "runtime_metrics": {
           "type": "boolean"
         },
         "search_tool": {
           "type": "boolean"
         },
+        "secret_auth_storage": {
+          "type": "boolean"
+        },
         "shell_snapshot": {
           "type": "boolean"
         },
@@ -4735,6 +4841,9 @@
         "skill_mcp_dependency_install": {
           "type": "boolean"
         },
+        "sleep_tool": {
+          "type": "boolean"
+        },
         "sqlite": {
           "type": "boolean"
         },
@@ -4753,6 +4862,9 @@
         "terminal_visualization_instructions": {
           "type": "boolean"
         },
+        "token_budget": {
+          "type": "boolean"
+        },
         "tool_call_mcp_elicitation": {
           "type": "boolean"
         },

{code_agnostic-0.3.14 → code_agnostic-0.3.16}/code_agnostic/apps/common/models.py

@@ -22,6 +22,8 @@ class MCPServerDTO:
     type: MCPServerType
     command: str | None = None
     args: list[str] = field(default_factory=list)
+    cwd: str | None = None
+    env_file: str | None = None
     url: str | None = None
     timeout_ms: int | None = None
     headers: dict[str, str] = field(default_factory=dict)

{code_agnostic-0.3.14 → code_agnostic-0.3.16}/code_agnostic/apps/common/utils.py

@@ -67,6 +67,8 @@ def common_mcp_to_dto(mcp_servers: dict[str, Any]) -> dict[str, MCPServerDTO]:
 
         command = raw.get("command")
         args = raw.get("args")
+        cwd = raw.get("cwd")
+        env_file = raw.get("envFile")
         url = raw.get("url")
         timeout_ms = _coerce_timeout_ms(raw.get("timeout"))
 
@@ -96,6 +98,8 @@ def common_mcp_to_dto(mcp_servers: dict[str, Any]) -> dict[str, MCPServerDTO]:
                 type=MCPServerType.STDIO,
                 command=command,
                 args=[str(item) for item in args] if isinstance(args, list) else [],
+                cwd=cwd if isinstance(cwd, str) else None,
+                env_file=env_file if isinstance(env_file, str) else None,
                 timeout_ms=timeout_ms,
                 headers={str(k): str(v) for k, v in headers.items()}
                 if isinstance(headers, dict)
@@ -133,6 +137,10 @@ def dto_to_common_mcp(servers: dict[str, MCPServerDTO]) -> dict[str, Any]:
         if server.command:
             item["command"] = server.command
             item["args"] = [str(arg) for arg in server.args]
+            if server.cwd is not None:
+                item["cwd"] = server.cwd
+            if server.env_file is not None:
+                item["envFile"] = server.env_file
         elif server.url:
             item["url"] = server.url
         else:

{code_agnostic-0.3.14 → code_agnostic-0.3.16}/code_agnostic/apps/cursor/mapper.py

@@ -22,6 +22,9 @@ class CursorMCPMapper(IAppMCPMapper):
                         for item in server.get("args", [])
                         if isinstance(item, (str, int, float, bool))
                     ],
+                    env_file=server.get("envFile")
+                    if isinstance(server.get("envFile"), str)
+                    else None,
                     timeout_ms=(
                         int(server["timeout"])
                         if isinstance(server.get("timeout"), int)
@@ -82,9 +85,12 @@ class CursorMCPMapper(IAppMCPMapper):
             if server.type == MCPServerType.STDIO:
                 if not server.command:
                     continue
+                out["type"] = "stdio"
                 out["command"] = server.command
                 if server.args:
                     out["args"] = deepcopy(server.args)
+                if server.env_file is not None:
+                    out["envFile"] = server.env_file
             else:
                 if not server.url:
                     continue

{code_agnostic-0.3.14 → code_agnostic-0.3.16}/code_agnostic/apps/cursor/schema.json

@@ -23,12 +23,14 @@
       "type": "object",
       "required": ["command"],
       "properties": {
+        "type": { "const": "stdio" },
         "command": { "type": "string", "minLength": 1 },
         "args": {
           "type": "array",
           "items": { "type": "string" }
         },
         "timeout": { "type": "integer", "minimum": 0 },
+        "envFile": { "type": "string", "minLength": 1 },
         "env": { "$ref": "#/$defs/stringMap" },
         "headers": { "$ref": "#/$defs/stringMap" },
         "auth": { "$ref": "#/$defs/stringMap" }

{code_agnostic-0.3.14 → code_agnostic-0.3.16}/code_agnostic/apps/opencode/mapper.py

@@ -32,6 +32,9 @@ class OpenCodeMCPMapper(IAppMCPMapper):
                     type=MCPServerType.STDIO,
                     command=command,
                     args=args,
+                    cwd=server.get("cwd")
+                    if isinstance(server.get("cwd"), str)
+                    else None,
                     timeout_ms=(
                         int(server["timeout"])
                         if isinstance(server.get("timeout"), int)
@@ -90,6 +93,8 @@ class OpenCodeMCPMapper(IAppMCPMapper):
                     continue
                 out["type"] = "local"
                 out["command"] = [server.command, *server.args]
+                if server.cwd is not None:
+                    out["cwd"] = server.cwd
             else:
                 if not server.url:
                     continue

{code_agnostic-0.3.14 → code_agnostic-0.3.16}/code_agnostic/apps/opencode/schema.json

@@ -564,6 +564,10 @@
           },
           "description": "Command and arguments to run the MCP server"
         },
+        "cwd": {
+          "type": "string",
+          "description": "Working directory for the MCP server process. Relative paths resolve from the workspace directory."
+        },
         "environment": {
           "type": "object",
           "additionalProperties": {

{code_agnostic-0.3.14 → code_agnostic-0.3.16}/code_agnostic/cli/commands/agents.py

@@ -5,7 +5,11 @@ import shutil
 import click
 from rich.console import Console
 
-from code_agnostic.cli.helpers import validate_resource_name, workspace_config_root
+from code_agnostic.cli.helpers import (
+    reject_symlinked_source_dir,
+    validate_resource_name,
+    workspace_config_root,
+)
 from code_agnostic.cli.options import workspace_option
 from code_agnostic.core.repository import CoreRepository
 from code_agnostic.tui import SyncConsoleUI
@@ -36,6 +40,7 @@ def agents_remove(obj: dict[str, str], name: str, workspace: str | None) -> None
     validate_resource_name(name, "agent")
     core = CoreRepository()
     root = workspace_config_root(core, workspace)
+    reject_symlinked_source_dir(root / "agents", "agents")
     agent_dir = root / "agents" / name
     if agent_dir.is_dir():
         shutil.rmtree(agent_dir)