coana 0.0.1__tar.gz

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Files changed (10) hide show
  1. coana-0.0.1/LICENSE +21 -0
  2. coana-0.0.1/PKG-INFO +41 -0
  3. coana-0.0.1/README.md +23 -0
  4. coana-0.0.1/pyproject.toml +26 -0
  5. coana-0.0.1/setup.cfg +4 -0
  6. coana-0.0.1/src/coana/__init__.py +12 -0
  7. coana-0.0.1/src/coana.egg-info/PKG-INFO +41 -0
  8. coana-0.0.1/src/coana.egg-info/SOURCES.txt +8 -0
  9. coana-0.0.1/src/coana.egg-info/dependency_links.txt +1 -0
  10. coana-0.0.1/src/coana.egg-info/top_level.txt +1 -0
coana-0.0.1/LICENSE ADDED
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+ MIT License
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+
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+ Copyright (c) 2026 Nguyen Truong Co
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+
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+ Permission is hereby granted, free of charge, to any person obtaining a copy
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+ of this software and associated documentation files (the "Software"), to deal
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+ in the Software without restriction, including without limitation the rights
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+ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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+ copies of the Software, and to permit persons to whom the Software is
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+ furnished to do so, subject to the following conditions:
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+
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+ The above copyright notice and this permission notice shall be included in all
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+ copies or substantial portions of the Software.
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+
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+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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+ SOFTWARE.
coana-0.0.1/PKG-INFO ADDED
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+ Metadata-Version: 2.4
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+ Name: coana
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+ Version: 0.0.1
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+ Summary: CoAna: which oligomers mattered, and why. Lineage-resolved analysis of protein aggregation in molecular dynamics. (Name reservation; first functional release is 3.6.0.)
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+ Author: Nguyen Truong Co
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+ Maintainer: Nguyen Truong Co
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+ License-Expression: MIT
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+ Keywords: molecular dynamics,protein aggregation,oligomer,nucleation,Martini,lineage
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+ Classifier: Development Status :: 1 - Planning
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+ Classifier: Intended Audience :: Science/Research
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+ Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
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+ Classifier: Topic :: Scientific/Engineering :: Chemistry
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+ Classifier: Programming Language :: Python :: 3
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+ Requires-Python: >=3.10
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+ Description-Content-Type: text/markdown
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+ License-File: LICENSE
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+ Dynamic: license-file
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+
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+ # CoAna
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+
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+ **Which oligomers mattered, and why.**
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+
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+ CoAna analyses many-chain molecular-dynamics trajectories of protein
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+ aggregation. It reconstructs split/merge-aware oligomer lineages and
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+ classifies them by their future fate, so you can ask which assemblies were
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+ productive, and by what mechanism — not only which clusters formed.
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+
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+ ## Status
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+
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+ **This 0.0.1 release reserves the name and contains no analysis code.**
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+ `pip install coana` currently gives you nothing to run.
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+
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+ The first functional release will be **3.6.0**.
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+
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+ ## Author
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+
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+ Nguyen Truong Co
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+
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+ ## License
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+
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+ MIT
coana-0.0.1/README.md ADDED
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+ # CoAna
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+
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+ **Which oligomers mattered, and why.**
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+
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+ CoAna analyses many-chain molecular-dynamics trajectories of protein
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+ aggregation. It reconstructs split/merge-aware oligomer lineages and
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+ classifies them by their future fate, so you can ask which assemblies were
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+ productive, and by what mechanism — not only which clusters formed.
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+
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+ ## Status
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+
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+ **This 0.0.1 release reserves the name and contains no analysis code.**
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+ `pip install coana` currently gives you nothing to run.
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+
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+ The first functional release will be **3.6.0**.
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+
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+ ## Author
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+
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+ Nguyen Truong Co
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+
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+ ## License
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+
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+ MIT
coana-0.0.1/pyproject.toml ADDED
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+ [build-system]
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+ requires = ["setuptools>=77", "wheel"]
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+ build-backend = "setuptools.build_meta"
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+
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+ [project]
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+ name = "coana"
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+ version = "0.0.1"
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+ description = "CoAna: which oligomers mattered, and why. Lineage-resolved analysis of protein aggregation in molecular dynamics. (Name reservation; first functional release is 3.6.0.)"
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+ readme = "README.md"
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+ requires-python = ">=3.10"
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+ license = "MIT"
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+ license-files = ["LICENSE"]
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+ authors = [{ name = "Nguyen Truong Co" }]
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+ maintainers = [{ name = "Nguyen Truong Co" }]
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+ keywords = ["molecular dynamics", "protein aggregation", "oligomer", "nucleation", "Martini", "lineage"]
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+ classifiers = [
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+ "Development Status :: 1 - Planning",
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+ "Intended Audience :: Science/Research",
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+ "Topic :: Scientific/Engineering :: Bio-Informatics",
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+ "Topic :: Scientific/Engineering :: Chemistry",
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+ "Programming Language :: Python :: 3",
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+ ]
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+ dependencies = []
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+
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+ [tool.setuptools.packages.find]
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+ where = ["src"]
coana-0.0.1/setup.cfg ADDED
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+ [egg_info]
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+ tag_build =
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+ tag_date = 0
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+
coana-0.0.1/src/coana/__init__.py ADDED
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+ """CoAna -- name reservation.
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+
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+ This 0.0.1 release contains no analysis code. It reserves the name for CoAna,
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+ whose first functional release on PyPI will be 3.6.0.
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+
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+ CoAna analyses many-chain molecular-dynamics trajectories of protein
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+ aggregation: it reconstructs split/merge-aware oligomer lineages and asks
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+ which assemblies were productive, and by what mechanism.
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+ """
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+
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+ __version__ = "0.0.1"
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+ __all__ = ["__version__"]
coana-0.0.1/src/coana.egg-info/PKG-INFO ADDED
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+ Metadata-Version: 2.4
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+ Name: coana
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+ Version: 0.0.1
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+ Summary: CoAna: which oligomers mattered, and why. Lineage-resolved analysis of protein aggregation in molecular dynamics. (Name reservation; first functional release is 3.6.0.)
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+ Author: Nguyen Truong Co
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+ Maintainer: Nguyen Truong Co
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+ License-Expression: MIT
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+ Keywords: molecular dynamics,protein aggregation,oligomer,nucleation,Martini,lineage
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+ Classifier: Development Status :: 1 - Planning
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+ Classifier: Intended Audience :: Science/Research
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+ Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
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+ Classifier: Topic :: Scientific/Engineering :: Chemistry
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+ Classifier: Programming Language :: Python :: 3
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+ Requires-Python: >=3.10
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+ Description-Content-Type: text/markdown
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+ License-File: LICENSE
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+ Dynamic: license-file
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+
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+ # CoAna
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+
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+ **Which oligomers mattered, and why.**
22
+
23
+ CoAna analyses many-chain molecular-dynamics trajectories of protein
24
+ aggregation. It reconstructs split/merge-aware oligomer lineages and
25
+ classifies them by their future fate, so you can ask which assemblies were
26
+ productive, and by what mechanism — not only which clusters formed.
27
+
28
+ ## Status
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+
30
+ **This 0.0.1 release reserves the name and contains no analysis code.**
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+ `pip install coana` currently gives you nothing to run.
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+
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+ The first functional release will be **3.6.0**.
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+
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+ ## Author
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+
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+ Nguyen Truong Co
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+
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+ ## License
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+
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+ MIT
coana-0.0.1/src/coana.egg-info/SOURCES.txt ADDED
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+ LICENSE
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+ README.md
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+ pyproject.toml
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+ src/coana/__init__.py
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+ src/coana.egg-info/PKG-INFO
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+ src/coana.egg-info/SOURCES.txt
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+ src/coana.egg-info/dependency_links.txt
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+ src/coana.egg-info/top_level.txt
coana-0.0.1/src/coana.egg-info/top_level.txt ADDED
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+ coana