cloudos-cli 2.19.0__tar.gz → 2.19.1__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/PKG-INFO +5 -5
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/README.md +4 -4
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/cloudos_cli/__main__.py +2 -2
- cloudos_cli-2.19.1/cloudos_cli/_version.py +1 -0
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/cloudos_cli/clos.py +1 -1
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/cloudos_cli/jobs/job.py +1 -1
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/cloudos_cli.egg-info/PKG-INFO +5 -5
- cloudos_cli-2.19.0/cloudos_cli/_version.py +0 -1
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/LICENSE +0 -0
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/cloudos_cli/__init__.py +0 -0
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/cloudos_cli/jobs/__init__.py +0 -0
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/cloudos_cli/queue/__init__.py +0 -0
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/cloudos_cli/queue/queue.py +0 -0
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/cloudos_cli/utils/__init__.py +0 -0
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/cloudos_cli/utils/errors.py +0 -0
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/cloudos_cli/utils/requests.py +0 -0
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/cloudos_cli.egg-info/SOURCES.txt +0 -0
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/cloudos_cli.egg-info/dependency_links.txt +0 -0
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/cloudos_cli.egg-info/entry_points.txt +0 -0
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/cloudos_cli.egg-info/requires.txt +0 -0
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/cloudos_cli.egg-info/top_level.txt +0 -0
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/setup.cfg +0 -0
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/setup.py +0 -0
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/tests/__init__.py +0 -0
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/tests/functions_for_pytest.py +0 -0
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/tests/test_clos/__init__.py +0 -0
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/tests/test_clos/test_create_cromwell_header.py +0 -0
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/tests/test_clos/test_cromwell_switch.py +0 -0
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/tests/test_clos/test_detect_workflow.py +0 -0
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/tests/test_clos/test_get_cromwell_status.py +0 -0
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/tests/test_clos/test_get_curated_workflow_list.py +0 -0
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/tests/test_clos/test_get_job_list.py +0 -0
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/tests/test_clos/test_get_job_status.py +0 -0
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/tests/test_clos/test_get_project_list.py +0 -0
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/tests/test_clos/test_get_user_info.py +0 -0
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/tests/test_clos/test_get_workflow_list.py +0 -0
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/tests/test_clos/test_is_module.py +0 -0
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/tests/test_clos/test_process_job_list.py +0 -0
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/tests/test_clos/test_process_project_list.py +0 -0
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/tests/test_clos/test_process_workflow_list.py +0 -0
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/tests/test_clos/test_wait_job_completion.py +0 -0
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/tests/test_clos/test_workflow_import.py +0 -0
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/tests/test_jobs/__init__.py +0 -0
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/tests/test_jobs/test_convert_nextflow_to_json.py +0 -0
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/tests/test_jobs/test_project_id.py +0 -0
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/tests/test_jobs/test_send_job.py +0 -0
- {cloudos_cli-2.19.0 → cloudos_cli-2.19.1}/tests/test_jobs/test_workflow_id.py +0 -0
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
Metadata-Version: 2.4
|
|
2
2
|
Name: cloudos_cli
|
|
3
|
-
Version: 2.19.
|
|
3
|
+
Version: 2.19.1
|
|
4
4
|
Summary: Python package for interacting with CloudOS
|
|
5
5
|
Home-page: https://github.com/lifebit-ai/cloudos-cli
|
|
6
6
|
Author: David Piñeyro
|
|
@@ -285,10 +285,10 @@ If everything went well, you should see something like:
|
|
|
285
285
|
|
|
286
286
|
```console
|
|
287
287
|
Executing run...
|
|
288
|
-
Job successfully launched to CloudOS, please check the following link: https://cloudos.lifebit.ai/app/
|
|
288
|
+
Job successfully launched to CloudOS, please check the following link: https://cloudos.lifebit.ai/app/advanced-analytics/analyses/62c83a1191fe06013b7ef355
|
|
289
289
|
Your assigned job id is: 62c83a1191fe06013b7ef355
|
|
290
290
|
Your current job status is: initializing
|
|
291
|
-
To further check your job status you can either go to https://cloudos.lifebit.ai/app/
|
|
291
|
+
To further check your job status you can either go to https://cloudos.lifebit.ai/app/advanced-analytics/analyses/62c83a1191fe06013b7ef355 or use the following command:
|
|
292
292
|
cloudos job status \
|
|
293
293
|
--apikey $MY_API_KEY \
|
|
294
294
|
--cloudos-url https://cloudos.lifebit.ai \
|
|
@@ -321,7 +321,7 @@ previous command should have an output similar to:
|
|
|
321
321
|
|
|
322
322
|
```console
|
|
323
323
|
Executing run...
|
|
324
|
-
Job successfully launched to CloudOS, please check the following link: https://cloudos.lifebit.ai/app/
|
|
324
|
+
Job successfully launched to CloudOS, please check the following link: https://cloudos.lifebit.ai/app/advanced-analytics/analyses/62c83a6191fe06013b7ef363
|
|
325
325
|
Your assigned job id is: 62c83a6191fe06013b7ef363
|
|
326
326
|
Please, wait until job completion or max wait time of 3600 seconds is reached.
|
|
327
327
|
Your current job status is: initializing.
|
|
@@ -423,7 +423,7 @@ The expected output should be something similar to:
|
|
|
423
423
|
Executing status...
|
|
424
424
|
Your current job status is: completed
|
|
425
425
|
|
|
426
|
-
To further check your job status you can either go to https://cloudos.lifebit.ai/app/
|
|
426
|
+
To further check your job status you can either go to https://cloudos.lifebit.ai/app/advanced-analytics/analyses/62c83a1191fe06013b7ef355 or repeat the command you just used.
|
|
427
427
|
```
|
|
428
428
|
|
|
429
429
|
#### Get a list of your jobs from a CloudOS workspace
|
|
@@ -250,10 +250,10 @@ If everything went well, you should see something like:
|
|
|
250
250
|
|
|
251
251
|
```console
|
|
252
252
|
Executing run...
|
|
253
|
-
Job successfully launched to CloudOS, please check the following link: https://cloudos.lifebit.ai/app/
|
|
253
|
+
Job successfully launched to CloudOS, please check the following link: https://cloudos.lifebit.ai/app/advanced-analytics/analyses/62c83a1191fe06013b7ef355
|
|
254
254
|
Your assigned job id is: 62c83a1191fe06013b7ef355
|
|
255
255
|
Your current job status is: initializing
|
|
256
|
-
To further check your job status you can either go to https://cloudos.lifebit.ai/app/
|
|
256
|
+
To further check your job status you can either go to https://cloudos.lifebit.ai/app/advanced-analytics/analyses/62c83a1191fe06013b7ef355 or use the following command:
|
|
257
257
|
cloudos job status \
|
|
258
258
|
--apikey $MY_API_KEY \
|
|
259
259
|
--cloudos-url https://cloudos.lifebit.ai \
|
|
@@ -286,7 +286,7 @@ previous command should have an output similar to:
|
|
|
286
286
|
|
|
287
287
|
```console
|
|
288
288
|
Executing run...
|
|
289
|
-
Job successfully launched to CloudOS, please check the following link: https://cloudos.lifebit.ai/app/
|
|
289
|
+
Job successfully launched to CloudOS, please check the following link: https://cloudos.lifebit.ai/app/advanced-analytics/analyses/62c83a6191fe06013b7ef363
|
|
290
290
|
Your assigned job id is: 62c83a6191fe06013b7ef363
|
|
291
291
|
Please, wait until job completion or max wait time of 3600 seconds is reached.
|
|
292
292
|
Your current job status is: initializing.
|
|
@@ -388,7 +388,7 @@ The expected output should be something similar to:
|
|
|
388
388
|
Executing status...
|
|
389
389
|
Your current job status is: completed
|
|
390
390
|
|
|
391
|
-
To further check your job status you can either go to https://cloudos.lifebit.ai/app/
|
|
391
|
+
To further check your job status you can either go to https://cloudos.lifebit.ai/app/advanced-analytics/analyses/62c83a1191fe06013b7ef355 or repeat the command you just used.
|
|
392
392
|
```
|
|
393
393
|
|
|
394
394
|
#### Get a list of your jobs from a CloudOS workspace
|
|
@@ -466,7 +466,7 @@ def run(apikey,
|
|
|
466
466
|
docker_login=docker_login,
|
|
467
467
|
verify=verify_ssl)
|
|
468
468
|
print(f'\tYour assigned job id is: {j_id}\n')
|
|
469
|
-
j_url = f'{cloudos_url}/app/
|
|
469
|
+
j_url = f'{cloudos_url}/app/advanced-analytics/analyses/{j_id}'
|
|
470
470
|
if wait_completion:
|
|
471
471
|
print('\tPlease, wait until job completion (max wait time of ' +
|
|
472
472
|
f'{wait_time} seconds).\n')
|
|
@@ -752,7 +752,7 @@ def job_status(apikey,
|
|
|
752
752
|
j_status = cl.get_job_status(job_id, verify_ssl)
|
|
753
753
|
j_status_h = json.loads(j_status.content)["status"]
|
|
754
754
|
print(f'\tYour current job status is: {j_status_h}\n')
|
|
755
|
-
j_url = f'{cloudos_url}/app/
|
|
755
|
+
j_url = f'{cloudos_url}/app/advanced-analytics/analyses/{job_id}'
|
|
756
756
|
print(f'\tTo further check your job status you can either go to {j_url} ' +
|
|
757
757
|
'or repeat the command you just used.')
|
|
758
758
|
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
__version__ = '2.19.1'
|
|
@@ -87,7 +87,7 @@ class Cloudos:
|
|
|
87
87
|
: dict
|
|
88
88
|
A dict with three elements collected from the job status: 'name', 'id', 'status'.
|
|
89
89
|
"""
|
|
90
|
-
j_url = f'{self.cloudos_url}/app/
|
|
90
|
+
j_url = f'{self.cloudos_url}/app/advanced-analytics/analyses/{job_id}'
|
|
91
91
|
elapsed = 0
|
|
92
92
|
j_status_h_old = ''
|
|
93
93
|
# make sure user doesn't surpass the wait time
|
|
@@ -544,5 +544,5 @@ class Job(Cloudos):
|
|
|
544
544
|
raise BadRequestException(r)
|
|
545
545
|
j_id = json.loads(r.content)["_id"]
|
|
546
546
|
print('\tJob successfully launched to CloudOS, please check the ' +
|
|
547
|
-
f'following link: {cloudos_url}/app/
|
|
547
|
+
f'following link: {cloudos_url}/app/advanced-analytics/analyses/{j_id}')
|
|
548
548
|
return j_id
|
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
Metadata-Version: 2.4
|
|
2
2
|
Name: cloudos_cli
|
|
3
|
-
Version: 2.19.
|
|
3
|
+
Version: 2.19.1
|
|
4
4
|
Summary: Python package for interacting with CloudOS
|
|
5
5
|
Home-page: https://github.com/lifebit-ai/cloudos-cli
|
|
6
6
|
Author: David Piñeyro
|
|
@@ -285,10 +285,10 @@ If everything went well, you should see something like:
|
|
|
285
285
|
|
|
286
286
|
```console
|
|
287
287
|
Executing run...
|
|
288
|
-
Job successfully launched to CloudOS, please check the following link: https://cloudos.lifebit.ai/app/
|
|
288
|
+
Job successfully launched to CloudOS, please check the following link: https://cloudos.lifebit.ai/app/advanced-analytics/analyses/62c83a1191fe06013b7ef355
|
|
289
289
|
Your assigned job id is: 62c83a1191fe06013b7ef355
|
|
290
290
|
Your current job status is: initializing
|
|
291
|
-
To further check your job status you can either go to https://cloudos.lifebit.ai/app/
|
|
291
|
+
To further check your job status you can either go to https://cloudos.lifebit.ai/app/advanced-analytics/analyses/62c83a1191fe06013b7ef355 or use the following command:
|
|
292
292
|
cloudos job status \
|
|
293
293
|
--apikey $MY_API_KEY \
|
|
294
294
|
--cloudos-url https://cloudos.lifebit.ai \
|
|
@@ -321,7 +321,7 @@ previous command should have an output similar to:
|
|
|
321
321
|
|
|
322
322
|
```console
|
|
323
323
|
Executing run...
|
|
324
|
-
Job successfully launched to CloudOS, please check the following link: https://cloudos.lifebit.ai/app/
|
|
324
|
+
Job successfully launched to CloudOS, please check the following link: https://cloudos.lifebit.ai/app/advanced-analytics/analyses/62c83a6191fe06013b7ef363
|
|
325
325
|
Your assigned job id is: 62c83a6191fe06013b7ef363
|
|
326
326
|
Please, wait until job completion or max wait time of 3600 seconds is reached.
|
|
327
327
|
Your current job status is: initializing.
|
|
@@ -423,7 +423,7 @@ The expected output should be something similar to:
|
|
|
423
423
|
Executing status...
|
|
424
424
|
Your current job status is: completed
|
|
425
425
|
|
|
426
|
-
To further check your job status you can either go to https://cloudos.lifebit.ai/app/
|
|
426
|
+
To further check your job status you can either go to https://cloudos.lifebit.ai/app/advanced-analytics/analyses/62c83a1191fe06013b7ef355 or repeat the command you just used.
|
|
427
427
|
```
|
|
428
428
|
|
|
429
429
|
#### Get a list of your jobs from a CloudOS workspace
|
|
@@ -1 +0,0 @@
|
|
|
1
|
-
__version__ = '2.19.0'
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|