clio-kit 2.7.0__tar.gz → 2.7.2__tar.gz

{clio_kit-2.7.0 → clio_kit-2.7.2}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: clio-kit
-Version: 2.7.0
+Version: 2.7.2
 Summary: CLIO Kit - MCP Servers, Clients, and Tools for AI Agents
 Project-URL: Homepage, https://github.com/iowarp/clio-kit
 Project-URL: Repository, https://github.com/iowarp/clio-kit

{clio_kit-2.7.0 → clio_kit-2.7.2}/clio-kit-mcp-servers/adios/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.7.0",
+      "version": "2.7.2",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.7.0 → clio_kit-2.7.2}/clio-kit-mcp-servers/adios/src/adios_mcp/server.py

@@ -27,7 +27,7 @@ mcp: FastMCP = FastMCP(
 # List BP5 Files Tool
 @mcp.tool(
     name="list_bp5",
-    title="list(bp5)",
+    title="List BP5",
     description="Lists all BP5 files in a given directory. The 'directory' parameter must be an absolute path.",
     annotations={
         "readOnlyHint": True,
@@ -44,7 +44,7 @@ async def list_bp5_tool(directory: str = "data/") -> dict:
 # ─── INSPECT VARIABLES ───────────────────────────────────────────────────────
 @mcp.tool(
     name="inspect_variables",
-    title="inspect(vars)",
+    title="Inspect Variables",
     description="Inspects variables in a BP5 file, returning type, shape, and steps. Optionally filters by variable name.",
     annotations={
         "readOnlyHint": True,
@@ -63,7 +63,7 @@ async def inspect_variables_tool(
 # ─── INSPECT VARIABLES AT STEP ─────────────────────────────────────────────────
 @mcp.tool(
     name="inspect_variables_at_step",
-    title="inspect(step)",
+    title="Inspect Step Variables",
     description="Inspects a specific variable at a given step in a BP5 file. All parameters are required.",
     annotations={
         "readOnlyHint": True,
@@ -84,7 +84,7 @@ async def inspect_variables_at_step_tool(
 # ─── INSPECT ATTRIBUTES ──────────────────────────────────────────────────────
 @mcp.tool(
     name="inspect_attributes",
-    title="inspect(attrs)",
+    title="Inspect Attributes",
     description="Reads global or variable-specific attributes from a BP5 file. The 'variable_name' is optional.",
     annotations={
         "readOnlyHint": True,
@@ -103,7 +103,7 @@ async def inspect_attributes_tool(
 # ─── READ VARIABLE AT STEP ────────────────────────────────────────────────────
 @mcp.tool(
     name="read_variable_at_step",
-    title="read(step)",
+    title="Read Step Variable",
     description="Reads a named variable at a specific step from a BP5 file. All parameters are required.",
     annotations={
         "readOnlyHint": True,

{clio_kit-2.7.0 → clio_kit-2.7.2}/clio-kit-mcp-servers/arxiv/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.7.0",
+      "version": "2.7.2",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.7.0 → clio_kit-2.7.2}/clio-kit-mcp-servers/arxiv/src/arxiv_mcp/server.py

@@ -41,7 +41,7 @@ _READONLY_ANNOTATIONS = {
 
 @mcp.tool(
     name="search_arxiv",
-    title="search(papers)",
+    title="Search Papers",
     description="Search ArXiv for papers by category or topic.",
     annotations=_READONLY_ANNOTATIONS,
     tags={"arxiv", "search"},
@@ -57,7 +57,7 @@ async def search_arxiv_tool(query: str = "cs.AI", max_results: int = 5) -> dict:
 
 @mcp.tool(
     name="get_recent_papers",
-    title="recent(papers)",
+    title="Recent Papers",
     description="Get recent papers from a specific ArXiv category.",
     annotations=_READONLY_ANNOTATIONS,
     tags={"arxiv", "papers"},
@@ -73,7 +73,7 @@ async def get_recent_papers_tool(category: str = "cs.AI", max_results: int = 5)
 
 @mcp.tool(
     name="search_papers_by_author",
-    title="search(author)",
+    title="Search By Author",
     description="Search ArXiv papers by author name.",
     annotations=_READONLY_ANNOTATIONS,
     tags={"arxiv", "search"},
@@ -89,7 +89,7 @@ async def search_papers_by_author_tool(author: str, max_results: int = 10) -> di
 
 @mcp.tool(
     name="search_by_title",
-    title="search(title)",
+    title="Search By Title",
     description="Search ArXiv papers by title keywords.",
     annotations=_READONLY_ANNOTATIONS,
     tags={"arxiv", "search"},
@@ -105,7 +105,7 @@ async def search_by_title_tool(title_keywords: str, max_results: int = 10) -> di
 
 @mcp.tool(
     name="search_by_abstract",
-    title="search(abstract)",
+    title="Search By Abstract",
     description="Search ArXiv papers by abstract keywords.",
     annotations=_READONLY_ANNOTATIONS,
     tags={"arxiv", "search"},
@@ -125,7 +125,7 @@ async def search_by_abstract_tool(
 
 @mcp.tool(
     name="search_by_subject",
-    title="search(subject)",
+    title="Search By Subject",
     description="Search ArXiv papers by subject classification.",
     annotations=_READONLY_ANNOTATIONS,
     tags={"arxiv", "search"},
@@ -141,7 +141,7 @@ async def search_by_subject_tool(subject: str, max_results: int = 10) -> dict:
 
 @mcp.tool(
     name="search_date_range",
-    title="search(range)",
+    title="Search By Date",
     description="Search ArXiv papers within a specific date range.",
     annotations=_READONLY_ANNOTATIONS,
     tags={"arxiv", "search"},
@@ -161,7 +161,7 @@ async def search_date_range_tool(
 
 @mcp.tool(
     name="get_paper_details",
-    title="get(paper)",
+    title="Paper Details",
     description="Get detailed information about a specific ArXiv paper by ID.",
     annotations=_READONLY_ANNOTATIONS,
     tags={"arxiv", "papers"},
@@ -177,7 +177,7 @@ async def get_paper_details_tool(arxiv_id: str) -> dict:
 
 @mcp.tool(
     name="export_to_bibtex",
-    title="export(bibtex)",
+    title="Export BibTeX",
     description="Export search results to BibTeX format for citation management.",
     annotations=_READONLY_ANNOTATIONS,
     tags={"arxiv", "export"},
@@ -193,7 +193,7 @@ async def export_to_bibtex_tool(papers_json: str) -> dict:
 
 @mcp.tool(
     name="find_similar_papers",
-    title="find(similar)",
+    title="Find Similar Papers",
     description="Find papers similar to a reference paper based on categories and keywords.",
     annotations=_READONLY_ANNOTATIONS,
     tags={"arxiv", "search"},
@@ -213,7 +213,7 @@ async def find_similar_papers_tool(
 
 @mcp.tool(
     name="download_paper_pdf",
-    title="download(pdf)",
+    title="Download PDF",
     description="Download the PDF of a paper from ArXiv.",
     annotations=_READONLY_ANNOTATIONS,
     tags={"arxiv", "download"},
@@ -231,7 +231,7 @@ async def download_paper_pdf_tool(
 
 @mcp.tool(
     name="get_pdf_url",
-    title="get(pdfurl)",
+    title="Get PDF URL",
     description="Get the direct PDF URL for a paper without downloading.",
     annotations=_READONLY_ANNOTATIONS,
     tags={"arxiv", "papers"},
@@ -247,7 +247,7 @@ async def get_pdf_url_tool(arxiv_id: str) -> dict:
 
 @mcp.tool(
     name="download_multiple_pdfs",
-    title="download(many)",
+    title="Download Multiple PDFs",
     description="Download multiple PDFs concurrently with rate limiting.",
     annotations=_READONLY_ANNOTATIONS,
     tags={"arxiv", "download"},

{clio_kit-2.7.0 → clio_kit-2.7.2}/clio-kit-mcp-servers/chronolog/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.7.0",
+      "version": "2.7.2",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.7.0 → clio_kit-2.7.2}/clio-kit-mcp-servers/chronolog/src/chronomcp/server.py

@@ -15,7 +15,7 @@ mcp: FastMCP = config.mcp
 
 
 @mcp.tool(
-    title="start(chronolog)",
+    title="Start Logging",
     annotations={
         "readOnlyHint": False,
         "destructiveHint": False,
@@ -31,7 +31,7 @@ async def start_chronolog(
 
 
 @mcp.tool(
-    title="record(interaction)",
+    title="Record Interaction",
     annotations={
         "readOnlyHint": False,
         "destructiveHint": False,
@@ -45,7 +45,7 @@ async def record_interaction(user_message: str, assistant_message: str) -> str:
 
 
 @mcp.tool(
-    title="stop(chronolog)",
+    title="Stop Logging",
     annotations={
         "readOnlyHint": False,
         "destructiveHint": False,
@@ -59,7 +59,7 @@ async def stop_chronolog() -> str:
 
 
 @mcp.tool(
-    title="retrieve(logs)",
+    title="Retrieve Logs",
     annotations={
         "readOnlyHint": True,
         "destructiveHint": False,

{clio_kit-2.7.0 → clio_kit-2.7.2}/clio-kit-mcp-servers/compression/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.7.0",
+      "version": "2.7.2",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.7.0 → clio_kit-2.7.2}/clio-kit-mcp-servers/compression/src/compression_mcp/server.py

@@ -26,7 +26,7 @@ mcp: FastMCP = FastMCP(
 
 
 @mcp.tool(
-    title="compress(file)",
+    title="Compress",
     annotations={
         "readOnlyHint": False,
         "destructiveHint": False,
@@ -45,7 +45,7 @@ async def compress_file_tool(
 
 
 @mcp.tool(
-    title="decompress(file)",
+    title="Decompress",
     annotations={
         "readOnlyHint": False,
         "destructiveHint": False,

{clio_kit-2.7.0 → clio_kit-2.7.2}/clio-kit-mcp-servers/darshan/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.7.0",
+      "version": "2.7.2",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.7.0 → clio_kit-2.7.2}/clio-kit-mcp-servers/darshan/src/darshan_mcp/server.py

@@ -41,7 +41,7 @@ _READ_ONLY_ANNOTATIONS = {
 
 @mcp.tool(
     name="load_darshan_log",
-    title="load(log)",
+    title="Load Log",
     description="Load and parse a Darshan log file to extract I/O performance metrics and metadata.",
     annotations=_READ_ONLY_ANNOTATIONS,
     tags={"darshan", "io-analysis"},
@@ -63,7 +63,7 @@ async def load_darshan_log_tool(log_file_path: str) -> dict:
 
 @mcp.tool(
     name="get_job_summary",
-    title="get(job summary)",
+    title="Job Summary",
     description="Get job-level summary from a Darshan log including runtime, process count, and I/O volume.",
     annotations=_READ_ONLY_ANNOTATIONS,
     tags={"darshan", "io-analysis"},
@@ -85,7 +85,7 @@ async def get_job_summary_tool(log_file_path: str) -> dict:
 
 @mcp.tool(
     name="analyze_file_access_patterns",
-    title="analyze(access)",
+    title="Analyze File Access",
     description="Analyze file access patterns including read/write types and sequential vs random access.",
     annotations=_READ_ONLY_ANNOTATIONS,
     tags={"darshan", "io-analysis"},
@@ -112,7 +112,7 @@ async def analyze_file_access_patterns_tool(
 
 @mcp.tool(
     name="get_io_performance_metrics",
-    title="get(io metrics)",
+    title="IO Performance",
     description="Extract I/O performance metrics including bandwidth, IOPS, and request sizes.",
     annotations=_READ_ONLY_ANNOTATIONS,
     tags={"darshan", "performance"},
@@ -134,7 +134,7 @@ async def get_io_performance_metrics_tool(log_file_path: str) -> dict:
 
 @mcp.tool(
     name="analyze_posix_operations",
-    title="analyze(posix)",
+    title="Analyze POSIX Ops",
     description="Analyze POSIX I/O operations including read/write system calls and their frequency.",
     annotations=_READ_ONLY_ANNOTATIONS,
     tags={"darshan", "io-analysis"},
@@ -156,7 +156,7 @@ async def analyze_posix_operations_tool(log_file_path: str) -> dict:
 
 @mcp.tool(
     name="analyze_mpiio_operations",
-    title="analyze(mpiio)",
+    title="Analyze MPI-IO Ops",
     description="Analyze MPI-IO operations including collective vs independent operations.",
     annotations=_READ_ONLY_ANNOTATIONS,
     tags={"darshan", "io-analysis"},
@@ -178,7 +178,7 @@ async def analyze_mpiio_operations_tool(log_file_path: str) -> dict:
 
 @mcp.tool(
     name="identify_io_bottlenecks",
-    title="find(bottlenecks)",
+    title="Find Bottlenecks",
     description="Identify I/O performance bottlenecks by analyzing access patterns and operations.",
     annotations=_READ_ONLY_ANNOTATIONS,
     tags={"darshan", "performance"},
@@ -200,7 +200,7 @@ async def identify_io_bottlenecks_tool(log_file_path: str) -> dict:
 
 @mcp.tool(
     name="get_timeline_analysis",
-    title="get(timeline)",
+    title="Timeline Analysis",
     description="Generate timeline analysis showing I/O activity over time and temporal patterns.",
     annotations=_READ_ONLY_ANNOTATIONS,
     tags={"darshan", "performance"},
@@ -225,7 +225,7 @@ async def get_timeline_analysis_tool(
 
 @mcp.tool(
     name="compare_darshan_logs",
-    title="compare(logs)",
+    title="Compare Logs",
     description="Compare two Darshan log files to identify performance differences between runs.",
     annotations=_READ_ONLY_ANNOTATIONS,
     tags={"darshan", "performance"},
@@ -255,7 +255,7 @@ async def compare_darshan_logs_tool(
 
 @mcp.tool(
     name="generate_io_summary_report",
-    title="generate(report)",
+    title="Summary Report",
     description="Generate a comprehensive I/O summary report with findings and recommendations.",
     annotations=_READ_ONLY_ANNOTATIONS,
     tags={"darshan", "performance"},

{clio_kit-2.7.0 → clio_kit-2.7.2}/clio-kit-mcp-servers/geo/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.7.0",
+      "version": "2.7.2",
       "transport": {
         "type": "stdio"
       },