PyPI - clio-kit - Versions diffs - 2.6.5__tar.gz → 2.7.0__tar.gz - Mend

clio-kit 2.6.5tar.gz → 2.7.0tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (516) hide show

{clio_kit-2.6.5 → clio_kit-2.7.0}/PKG-INFO RENAMED Viewed

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: clio-kit
-Version: 2.6.5
+Version: 2.7.0
 Summary: CLIO Kit - MCP Servers, Clients, and Tools for AI Agents
 Project-URL: Homepage, https://github.com/iowarp/clio-kit
 Project-URL: Repository, https://github.com/iowarp/clio-kit
@@ -276,7 +276,7 @@ distinct `not_installed` semantic, while real Spack failures remain errors.
 | **`geo`** | 2.2.3 | Geospatial | Render GeoJSON vector layers with basemaps | `clio-kit mcp-server geo` |
 | **`geojson`** | 2.2.3 | Geospatial | Inspect, validate, and summarize GeoJSON | `clio-kit mcp-server geojson` |
 | **`hdf5`** | 2.2.3 | Data I/O | HPC-optimized scientific data with 27 tools, AI insights, caching, streaming | `clio-kit mcp-server hdf5` |
-| **`jarvis`** | 3.6.1 | Workflow | Durable pipeline, bounded package discovery, progress, artifact, and service-runtime management | `clio-kit mcp-server jarvis` |
+| **`jarvis`** | 3.6.2 | Workflow | Durable pipeline, bounded package discovery, progress, artifact, and service-runtime management | `clio-kit mcp-server jarvis` |
 | **`lmod`** | 2.2.3 | Environment | Environment module management | `clio-kit mcp-server lmod` |
 | **`ndp`** | 2.2.3 | Data Protocol | Search and discover datasets across CKAN instances | `clio-kit mcp-server ndp` |
 | **`node-hardware`** | 2.2.3 | System | System hardware information | `clio-kit mcp-server node-hardware` |

{clio_kit-2.6.5 → clio_kit-2.7.0}/README.md RENAMED Viewed

@@ -250,7 +250,7 @@ distinct `not_installed` semantic, while real Spack failures remain errors.
 | **`geo`** | 2.2.3 | Geospatial | Render GeoJSON vector layers with basemaps | `clio-kit mcp-server geo` |
 | **`geojson`** | 2.2.3 | Geospatial | Inspect, validate, and summarize GeoJSON | `clio-kit mcp-server geojson` |
 | **`hdf5`** | 2.2.3 | Data I/O | HPC-optimized scientific data with 27 tools, AI insights, caching, streaming | `clio-kit mcp-server hdf5` |
-| **`jarvis`** | 3.6.1 | Workflow | Durable pipeline, bounded package discovery, progress, artifact, and service-runtime management | `clio-kit mcp-server jarvis` |
+| **`jarvis`** | 3.6.2 | Workflow | Durable pipeline, bounded package discovery, progress, artifact, and service-runtime management | `clio-kit mcp-server jarvis` |
 | **`lmod`** | 2.2.3 | Environment | Environment module management | `clio-kit mcp-server lmod` |
 | **`ndp`** | 2.2.3 | Data Protocol | Search and discover datasets across CKAN instances | `clio-kit mcp-server ndp` |
 | **`node-hardware`** | 2.2.3 | System | System hardware information | `clio-kit mcp-server node-hardware` |

{clio_kit-2.6.5 → clio_kit-2.7.0}/clio-kit-mcp-servers/adios/pyproject.toml RENAMED Viewed

@@ -22,7 +22,7 @@ keywords = [
 ]
 dependencies = [
-    "fastmcp>=3.2.0",
+    "fastmcp>=4.0.0b1",
     "numpy",
     "adios2",
     "h11>=0.16.0",

{clio_kit-2.6.5 → clio_kit-2.7.0}/clio-kit-mcp-servers/adios/server.json RENAMED Viewed

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.6.5",
+      "version": "2.7.0",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.6.5 → clio_kit-2.7.0}/clio-kit-mcp-servers/adios/src/adios_mcp/server.py RENAMED Viewed

@@ -27,6 +27,7 @@ mcp: FastMCP = FastMCP(
 # List BP5 Files Tool
 @mcp.tool(
     name="list_bp5",
+    title="list(bp5)",
     description="Lists all BP5 files in a given directory. The 'directory' parameter must be an absolute path.",
     annotations={
         "readOnlyHint": True,
@@ -43,6 +44,7 @@ async def list_bp5_tool(directory: str = "data/") -> dict:
 # ─── INSPECT VARIABLES ───────────────────────────────────────────────────────
 @mcp.tool(
     name="inspect_variables",
+    title="inspect(vars)",
     description="Inspects variables in a BP5 file, returning type, shape, and steps. Optionally filters by variable name.",
     annotations={
         "readOnlyHint": True,
@@ -61,6 +63,7 @@ async def inspect_variables_tool(
 # ─── INSPECT VARIABLES AT STEP ─────────────────────────────────────────────────
 @mcp.tool(
     name="inspect_variables_at_step",
+    title="inspect(step)",
     description="Inspects a specific variable at a given step in a BP5 file. All parameters are required.",
     annotations={
         "readOnlyHint": True,
@@ -81,6 +84,7 @@ async def inspect_variables_at_step_tool(
 # ─── INSPECT ATTRIBUTES ──────────────────────────────────────────────────────
 @mcp.tool(
     name="inspect_attributes",
+    title="inspect(attrs)",
     description="Reads global or variable-specific attributes from a BP5 file. The 'variable_name' is optional.",
     annotations={
         "readOnlyHint": True,
@@ -99,6 +103,7 @@ async def inspect_attributes_tool(
 # ─── READ VARIABLE AT STEP ────────────────────────────────────────────────────
 @mcp.tool(
     name="read_variable_at_step",
+    title="read(step)",
     description="Reads a named variable at a specific step from a BP5 file. All parameters are required.",
     annotations={
         "readOnlyHint": True,

{clio_kit-2.6.5 → clio_kit-2.7.0}/clio-kit-mcp-servers/adios/uv.lock RENAMED Viewed

@@ -49,7 +49,7 @@ requires-dist = [
     { name = "adios2" },
     { name = "authlib", specifier = ">=1.6.12" },
     { name = "cryptography", specifier = ">=48.0.1" },
-    { name = "fastmcp", specifier = ">=3.2.0" },
+    { name = "fastmcp", specifier = ">=4.0.0b1" },
     { name = "h11", specifier = ">=0.16.0" },
     { name = "idna", specifier = ">=3.15" },
     { name = "msgpack", specifier = ">=1.2.1" },
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+version = "4.0.0b1"
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 dependencies = [
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     { name = "platformdirs" },
     { name = "pydantic", extra = ["email"] },
     { name = "pydantic-settings" },
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 [package.optional-dependencies]
 client = [
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     { name = "exceptiongroup" },
-    { name = "httpx" },
+    { name = "httpx2" },
     { name = "mcp" },
     { name = "opentelemetry-api" },
     { name = "py-key-value-aio", extra = ["filetree", "keyring", "memory"] },
@@ -754,7 +755,7 @@ server = [
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     { name = "exceptiongroup" },
     { name = "griffelib" },
-    { name = "httpx" },
+    { name = "httpx2" },
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 version = "0.28.1"
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+[[package]]
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+version = "2.9.1"
+source = { registry = "https://pypi.org/simple" }
+dependencies = [
+    { name = "anyio" },
+    { name = "httpcore2" },
+    { name = "idna" },
+    { name = "truststore" },
+    { name = "typing-extensions", marker = "python_full_version < '3.13'" },
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 [[package]]
 name = "idna"
 version = "3.18"
@@ -1103,15 +1133,15 @@ wheels = [
 [[package]]
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-version = "1.28.1"
+version = "2.0.0"
 source = { registry = "https://pypi.org/simple" }
 dependencies = [
     { name = "anyio" },
-    { name = "httpx" },
-    { name = "httpx-sse" },
+    { name = "httpx2" },
     { name = "jsonschema" },
+    { name = "mcp-types" },
+    { name = "opentelemetry-api" },
     { name = "pydantic" },
-    { name = "pydantic-settings" },
     { name = "pyjwt", extra = ["crypto"] },
     { name = "python-multipart" },
     { name = "pywin32", marker = "sys_platform == 'win32'" },
@@ -1121,9 +1151,22 @@ dependencies = [
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{clio_kit-2.6.5 → clio_kit-2.7.0}/clio-kit-mcp-servers/arxiv/pyproject.toml RENAMED Viewed

@@ -14,7 +14,7 @@ keywords = ["data processing", "arxiv", "publications", "scientific data", "rese
 dependencies = [
     "authlib>=1.6.12",
     "cryptography>=48.0.1",
-    "fastmcp>=3.2.0",
+    "fastmcp>=4.0.0b1",
     "httpx>=0.24.0",
     "idna>=3.15",
     "msgpack>=1.2.1",

{clio_kit-2.6.5 → clio_kit-2.7.0}/clio-kit-mcp-servers/arxiv/server.json RENAMED Viewed

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.6.5",
+      "version": "2.7.0",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.6.5 → clio_kit-2.7.0}/clio-kit-mcp-servers/arxiv/src/arxiv_mcp/server.py RENAMED Viewed

@@ -41,6 +41,7 @@ _READONLY_ANNOTATIONS = {
 @mcp.tool(
     name="search_arxiv",
+    title="search(papers)",
     description="Search ArXiv for papers by category or topic.",
     annotations=_READONLY_ANNOTATIONS,
     tags={"arxiv", "search"},
@@ -56,6 +57,7 @@ async def search_arxiv_tool(query: str = "cs.AI", max_results: int = 5) -> dict:
 @mcp.tool(
     name="get_recent_papers",
+    title="recent(papers)",
     description="Get recent papers from a specific ArXiv category.",
     annotations=_READONLY_ANNOTATIONS,
     tags={"arxiv", "papers"},
@@ -71,6 +73,7 @@ async def get_recent_papers_tool(category: str = "cs.AI", max_results: int = 5)
 @mcp.tool(
     name="search_papers_by_author",
+    title="search(author)",
     description="Search ArXiv papers by author name.",
     annotations=_READONLY_ANNOTATIONS,
     tags={"arxiv", "search"},
@@ -86,6 +89,7 @@ async def search_papers_by_author_tool(author: str, max_results: int = 10) -> di
 @mcp.tool(
     name="search_by_title",
+    title="search(title)",
     description="Search ArXiv papers by title keywords.",
     annotations=_READONLY_ANNOTATIONS,
     tags={"arxiv", "search"},
@@ -101,6 +105,7 @@ async def search_by_title_tool(title_keywords: str, max_results: int = 10) -> di
 @mcp.tool(
     name="search_by_abstract",
+    title="search(abstract)",
     description="Search ArXiv papers by abstract keywords.",
     annotations=_READONLY_ANNOTATIONS,
     tags={"arxiv", "search"},
@@ -120,6 +125,7 @@ async def search_by_abstract_tool(
 @mcp.tool(
     name="search_by_subject",
+    title="search(subject)",
     description="Search ArXiv papers by subject classification.",
     annotations=_READONLY_ANNOTATIONS,
     tags={"arxiv", "search"},
@@ -135,6 +141,7 @@ async def search_by_subject_tool(subject: str, max_results: int = 10) -> dict:
 @mcp.tool(
     name="search_date_range",
+    title="search(range)",
     description="Search ArXiv papers within a specific date range.",
     annotations=_READONLY_ANNOTATIONS,
     tags={"arxiv", "search"},
@@ -154,6 +161,7 @@ async def search_date_range_tool(
 @mcp.tool(
     name="get_paper_details",
+    title="get(paper)",
     description="Get detailed information about a specific ArXiv paper by ID.",
     annotations=_READONLY_ANNOTATIONS,
     tags={"arxiv", "papers"},
@@ -169,6 +177,7 @@ async def get_paper_details_tool(arxiv_id: str) -> dict:
 @mcp.tool(
     name="export_to_bibtex",
+    title="export(bibtex)",
     description="Export search results to BibTeX format for citation management.",
     annotations=_READONLY_ANNOTATIONS,
     tags={"arxiv", "export"},
@@ -184,6 +193,7 @@ async def export_to_bibtex_tool(papers_json: str) -> dict:
 @mcp.tool(
     name="find_similar_papers",
+    title="find(similar)",
     description="Find papers similar to a reference paper based on categories and keywords.",
     annotations=_READONLY_ANNOTATIONS,
     tags={"arxiv", "search"},
@@ -203,6 +213,7 @@ async def find_similar_papers_tool(
 @mcp.tool(
     name="download_paper_pdf",
+    title="download(pdf)",
     description="Download the PDF of a paper from ArXiv.",
     annotations=_READONLY_ANNOTATIONS,
     tags={"arxiv", "download"},
@@ -220,6 +231,7 @@ async def download_paper_pdf_tool(
 @mcp.tool(
     name="get_pdf_url",
+    title="get(pdfurl)",
     description="Get the direct PDF URL for a paper without downloading.",
     annotations=_READONLY_ANNOTATIONS,
     tags={"arxiv", "papers"},
@@ -235,6 +247,7 @@ async def get_pdf_url_tool(arxiv_id: str) -> dict:
 @mcp.tool(
     name="download_multiple_pdfs",
+    title="download(many)",
     description="Download multiple PDFs concurrently with rate limiting.",
     annotations=_READONLY_ANNOTATIONS,
     tags={"arxiv", "download"},

clio-kit 2.6.5__tar.gz → 2.7.0__tar.gz

clio-kit 2.6.5tar.gz → 2.7.0tar.gz