clio-kit 2.5.6__tar.gz → 2.5.8__tar.gz

{clio_kit-2.5.6 → clio_kit-2.5.8}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: clio-kit
-Version: 2.5.6
+Version: 2.5.8
 Summary: CLIO Kit - MCP Servers, Clients, and Tools for AI Agents
 Project-URL: Homepage, https://github.com/iowarp/clio-kit
 Project-URL: Repository, https://github.com/iowarp/clio-kit
@@ -147,7 +147,7 @@ federation gates:
 
 ```bash
 clio-kit mcp-contracts
-clio-kit mcp-contract clio-kit-jarvis-user-v3.2
+clio-kit mcp-contract clio-kit-jarvis-user-v3.3
 clio-kit mcp-contract clio-kit-slurm-user-v3
 clio-kit mcp-contract clio-kit-spack-user-v2
 clio-kit mcp-contract clio-kit-scientific-catalog-user-v1
@@ -273,7 +273,7 @@ Agents should discover first, install only when needed, then pass the exact
 | **`geo`** | 2.2.3 | Geospatial | Render GeoJSON vector layers with basemaps | `clio-kit mcp-server geo` |
 | **`geojson`** | 2.2.3 | Geospatial | Inspect, validate, and summarize GeoJSON | `clio-kit mcp-server geojson` |
 | **`hdf5`** | 2.2.3 | Data I/O | HPC-optimized scientific data with 27 tools, AI insights, caching, streaming | `clio-kit mcp-server hdf5` |
-| **`jarvis`** | 3.2.4 | Workflow | Durable pipeline, bounded package discovery, progress, artifact, and service-runtime management | `clio-kit mcp-server jarvis` |
+| **`jarvis`** | 3.3.0 | Workflow | Durable pipeline, bounded package discovery, progress, artifact, and service-runtime management | `clio-kit mcp-server jarvis` |
 | **`lmod`** | 2.2.3 | Environment | Environment module management | `clio-kit mcp-server lmod` |
 | **`ndp`** | 2.2.3 | Data Protocol | Search and discover datasets across CKAN instances | `clio-kit mcp-server ndp` |
 | **`node-hardware`** | 2.2.3 | System | System hardware information | `clio-kit mcp-server node-hardware` |

{clio_kit-2.5.6 → clio_kit-2.5.8}/README.md

@@ -121,7 +121,7 @@ federation gates:
 
 ```bash
 clio-kit mcp-contracts
-clio-kit mcp-contract clio-kit-jarvis-user-v3.2
+clio-kit mcp-contract clio-kit-jarvis-user-v3.3
 clio-kit mcp-contract clio-kit-slurm-user-v3
 clio-kit mcp-contract clio-kit-spack-user-v2
 clio-kit mcp-contract clio-kit-scientific-catalog-user-v1
@@ -247,7 +247,7 @@ Agents should discover first, install only when needed, then pass the exact
 | **`geo`** | 2.2.3 | Geospatial | Render GeoJSON vector layers with basemaps | `clio-kit mcp-server geo` |
 | **`geojson`** | 2.2.3 | Geospatial | Inspect, validate, and summarize GeoJSON | `clio-kit mcp-server geojson` |
 | **`hdf5`** | 2.2.3 | Data I/O | HPC-optimized scientific data with 27 tools, AI insights, caching, streaming | `clio-kit mcp-server hdf5` |
-| **`jarvis`** | 3.2.4 | Workflow | Durable pipeline, bounded package discovery, progress, artifact, and service-runtime management | `clio-kit mcp-server jarvis` |
+| **`jarvis`** | 3.3.0 | Workflow | Durable pipeline, bounded package discovery, progress, artifact, and service-runtime management | `clio-kit mcp-server jarvis` |
 | **`lmod`** | 2.2.3 | Environment | Environment module management | `clio-kit mcp-server lmod` |
 | **`ndp`** | 2.2.3 | Data Protocol | Search and discover datasets across CKAN instances | `clio-kit mcp-server ndp` |
 | **`node-hardware`** | 2.2.3 | System | System hardware information | `clio-kit mcp-server node-hardware` |

{clio_kit-2.5.6 → clio_kit-2.5.8}/clio-kit-mcp-servers/adios/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.5.6",
+      "version": "2.5.8",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.5.6 → clio_kit-2.5.8}/clio-kit-mcp-servers/arxiv/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.5.6",
+      "version": "2.5.8",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.5.6 → clio_kit-2.5.8}/clio-kit-mcp-servers/chronolog/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.5.6",
+      "version": "2.5.8",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.5.6 → clio_kit-2.5.8}/clio-kit-mcp-servers/compression/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.5.6",
+      "version": "2.5.8",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.5.6 → clio_kit-2.5.8}/clio-kit-mcp-servers/darshan/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.5.6",
+      "version": "2.5.8",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.5.6 → clio_kit-2.5.8}/clio-kit-mcp-servers/geo/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.5.6",
+      "version": "2.5.8",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.5.6 → clio_kit-2.5.8}/clio-kit-mcp-servers/geojson/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.5.6",
+      "version": "2.5.8",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.5.6 → clio_kit-2.5.8}/clio-kit-mcp-servers/hdf5/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.5.6",
+      "version": "2.5.8",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.5.6 → clio_kit-2.5.8}/clio-kit-mcp-servers/jarvis/.claude-plugin/plugin.json

@@ -1,5 +1,5 @@
 {
   "name": "clio-jarvis",
   "description": "JARVIS-CD MCP with a compact user pipeline contract and explicit admin compatibility profiles",
-  "version": "3.2.4"
+  "version": "3.3.0"
 }

{clio_kit-2.5.6 → clio_kit-2.5.8}/clio-kit-mcp-servers/jarvis/README.md

@@ -53,6 +53,14 @@ jarvis_get_execution
 files. Removal intentionally updates only pipeline membership: it does not invoke
 package cleanup or delete installed or generated package files.
 
+`jarvis_add_step` always runs package-owned configuration and validation on the
+user surface. Use the canonical setting names returned by
+`jarvis_describe(target="package")`; only aliases explicitly listed there are
+also accepted. JSON documents may be passed directly as objects or lists under
+their exact setting name and are canonically serialized before JARVIS validates
+them. The lower-level admin `append_pkg` tool retains its explicit
+`do_configure` compatibility control.
+
 `jarvis_describe` supports:
 
 ```text
@@ -227,7 +235,7 @@ uv --directory clio-kit-mcp-servers/jarvis run pytest -q
 **Tags**: jarvis, pipeline, user
 
 ### `jarvis_add_step`
-**Description**: Add a package-backed step to a JARVIS pipeline and optionally configure that step with package-owned settings.
+**Description**: Add and configure a package-backed step using exact package-owned settings returned by `jarvis_describe`; user-level validation cannot be bypassed.
 **Tags**: jarvis, pipeline, user
 
 ### `jarvis_edit_step`

{clio_kit-2.5.6 → clio_kit-2.5.8}/clio-kit-mcp-servers/jarvis/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "jarvis-mcp"
-version = "3.2.4"
+version = "3.3.0"
 description = "JARVIS-CD MCP with a compact user pipeline contract and explicit admin compatibility profiles"
 readme = "README.md"
 requires-python = ">=3.11"

{clio_kit-2.5.6 → clio_kit-2.5.8}/clio-kit-mcp-servers/jarvis/server.json

@@ -3,7 +3,7 @@
   "name": "io.github.iowarp/jarvis-mcp",
   "title": "CLIO Jarvis",
   "description": "JARVIS-CD MCP with a compact user pipeline contract and explicit admin compatibility profiles",
-  "version": "3.2.4",
+  "version": "3.3.0",
   "repository": {
     "url": "https://github.com/iowarp/clio-kit",
     "source": "github"
@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.5.6",
+      "version": "2.5.8",
       "transport": {
         "type": "stdio"
       },
@@ -39,7 +39,7 @@
     },
     {
       "name": "jarvis_add_step",
-      "description": "Add a package-backed step to a JARVIS pipeline and optionally configure that step with package-owned settings."
+      "description": "Add and configure a package-backed step in a JARVIS pipeline. First use jarvis_describe(target='package') for the selected package; config keys must use its canonical setting names exactly, except for aliases explicitly listed there. User-level step configuration is always validated and cannot be bypassed."
     },
     {
       "name": "jarvis_edit_step",

{clio_kit-2.5.6 → clio_kit-2.5.8}/clio-kit-mcp-servers/jarvis/src/jarvis_mcp/capabilities/__init__.py

@@ -3,12 +3,12 @@ Jarvis MCP Server
 
 Jarvis-CD MCP - Pipeline Management for High-Performance Computing with comprehensive workflow operations
 
-Version: 3.2.4
+Version: 3.3.0
 Author: IoWarp Team - Gnosis Research Center
 License: BSD-3-Clause
 """
 
-__version__ = "3.2.4"
+__version__ = "3.3.0"
 __author__ = "IoWarp Team - Gnosis Research Center"
 __email__ = "grc@illinoistech.edu"
 __license__ = "BSD-3-Clause"

{clio_kit-2.5.6 → clio_kit-2.5.8}/clio-kit-mcp-servers/jarvis/src/jarvis_mcp/server.py

@@ -1362,8 +1362,11 @@ async def jarvis_describe_tool(
 @mcp.tool(
     name="jarvis_add_step",
     description=(
-        "Add a package-backed step to a JARVIS pipeline and optionally configure "
-        "that step with package-owned settings."
+        "Add and configure a package-backed step in a JARVIS pipeline. First use "
+        "jarvis_describe(target='package') for the selected package; config keys "
+        "must use its canonical setting names exactly, except for aliases explicitly "
+        "listed there. User-level step configuration is always validated and cannot "
+        "be bypassed."
     ),
     annotations={
         "readOnlyHint": False,
@@ -1376,15 +1379,27 @@ async def jarvis_add_step_tool(
     pipeline_id: str,
     package_name: str,
     step_id: Optional[str] = None,
-    config: Optional[dict[str, Any]] = None,
-    do_configure: bool = True,
+    config: Annotated[
+        Optional[dict[str, Any]],
+        Field(
+            description=(
+                "Package-owned configuration. Use canonical setting names exactly as "
+                "returned by jarvis_describe(target='package'); only aliases listed "
+                "there are also accepted, and settings must not be renamed or placed "
+                "under invented nesting. JSON documents may be passed directly as "
+                "objects or lists under their exact setting name; clio-kit serializes "
+                "them canonically before JARVIS package validation. Omit config to use "
+                "the package defaults."
+            )
+        ),
+    ] = None,
 ) -> dict:
-    """Add a step to a pipeline."""
+    """Add and configure one package step without a user-level validation bypass."""
     return await append_pkg(
         pipeline_id,
         package_name,
         pkg_id=step_id,
-        do_configure=do_configure,
+        do_configure=True,
         **(config or {}),
     )
 
@@ -2364,6 +2379,17 @@ def _setting_from_menu_item(item: dict[str, Any]) -> dict[str, Any]:
         setting["type"] = str(kind)
     if "default" in item:
         setting["default"] = item["default"]
+    choices = item.get("choices")
+    if isinstance(choices, (list, tuple)):
+        setting["choices"] = list(choices)
+    required = item.get("required")
+    if isinstance(required, bool):
+        setting["required"] = required
+    aliases = item.get("aliases")
+    if isinstance(aliases, (list, tuple)) and all(
+        isinstance(alias, str) and alias for alias in aliases
+    ):
+        setting["aliases"] = list(aliases)
     return {key: value for key, value in setting.items() if value is not None}
 
 

{clio_kit-2.5.6 → clio_kit-2.5.8}/clio-kit-mcp-servers/jarvis/uv.lock

@@ -813,7 +813,7 @@ requires-dist = [
 
 [[package]]
 name = "jarvis-mcp"
-version = "3.2.4"
+version = "3.3.0"
 source = { editable = "." }
 dependencies = [
     { name = "authlib" },

{clio_kit-2.5.6 → clio_kit-2.5.8}/clio-kit-mcp-servers/lmod/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.5.6",
+      "version": "2.5.8",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.5.6 → clio_kit-2.5.8}/clio-kit-mcp-servers/ndp/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.5.6",
+      "version": "2.5.8",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.5.6 → clio_kit-2.5.8}/clio-kit-mcp-servers/node-hardware/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.5.6",
+      "version": "2.5.8",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.5.6 → clio_kit-2.5.8}/clio-kit-mcp-servers/pandas/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.5.6",
+      "version": "2.5.8",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.5.6 → clio_kit-2.5.8}/clio-kit-mcp-servers/parallel-sort/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.5.6",
+      "version": "2.5.8",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.5.6 → clio_kit-2.5.8}/clio-kit-mcp-servers/paraview/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.5.6",
+      "version": "2.5.8",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.5.6 → clio_kit-2.5.8}/clio-kit-mcp-servers/parquet/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.5.6",
+      "version": "2.5.8",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.5.6 → clio_kit-2.5.8}/clio-kit-mcp-servers/plot/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.5.6",
+      "version": "2.5.8",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.5.6 → clio_kit-2.5.8}/clio-kit-mcp-servers/sac/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.5.6",
+      "version": "2.5.8",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.5.6 → clio_kit-2.5.8}/clio-kit-mcp-servers/scientific-catalog/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.5.6",
+      "version": "2.5.8",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.5.6 → clio_kit-2.5.8}/clio-kit-mcp-servers/seismic/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.5.6",
+      "version": "2.5.8",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.5.6 → clio_kit-2.5.8}/clio-kit-mcp-servers/slurm/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.5.6",
+      "version": "2.5.8",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.5.6 → clio_kit-2.5.8}/clio-kit-mcp-servers/spack/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.5.6",
+      "version": "2.5.8",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.5.6 → clio_kit-2.5.8}/clio-kit-mcp-servers/terrain/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.5.6",
+      "version": "2.5.8",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.5.6 → clio_kit-2.5.8}/mcp-server-versions.toml

@@ -23,7 +23,7 @@ darshan = "2.2.3"
 geo = "2.2.3"
 geojson = "2.2.3"
 hdf5 = "2.2.3"
-jarvis = "3.2.4"
+jarvis = "3.3.0"
 lmod = "2.2.3"
 ndp = "2.2.3"
 node-hardware = "2.2.3"

{clio_kit-2.5.6 → clio_kit-2.5.8}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
 
 [project]
 name = "clio-kit"
-version = "2.5.6"
+version = "2.5.8"
 description = "CLIO Kit - MCP Servers, Clients, and Tools for AI Agents"
 readme = "README.md"
 requires-python = ">=3.10"

{clio_kit-2.5.6 → clio_kit-2.5.8}/src/clio_kit/_mcp_contracts/index.json

@@ -1,13 +1,13 @@
 {
   "contracts": [
     {
-      "artifact": "jarvis-user-v3.2.json",
-      "artifact_sha256": "621f80e5a78a07488e04e93b7bba69c8e8aafac7ce544f76e642d1265bdf6b3a",
-      "contract_id": "clio-kit-jarvis-user-v3.2",
-      "contract_sha256": "12f6d349c9d44d8ce3594943dcd4018ec9b6e01ebb0e59d468bb1bb783a1ad5d",
+      "artifact": "jarvis-user-v3.3.json",
+      "artifact_sha256": "d5deb5f69af618be6a857544e770ac6f1ad1c335d80f3853e2fbbe09419672f5",
+      "contract_id": "clio-kit-jarvis-user-v3.3",
+      "contract_sha256": "0993ee9b2ee9b3c2b021a3967d9221199c3a6be50d726d4b125812e6b1148115",
       "profile": "user",
       "server_name": "jarvis",
-      "wire_sha256": "bda0abe2b57d5e52ef639bf530e967c3b65072ebc4761d25cd9cbbcf0cd934e9"
+      "wire_sha256": "c74276800cab5031ccd1538343180c40a58e9b8700d0b49e9ca9d4461d37696d"
     },
     {
       "artifact": "slurm-user-v3.json",
@@ -53,6 +53,15 @@
       "profile": "user",
       "server_name": "jarvis",
       "wire_sha256": "b2a6e531399c5a24678adf55e5133c1234718363661bde0636d81d0b1ae5db11"
+    },
+    {
+      "artifact": "jarvis-user-v3.2.json",
+      "artifact_sha256": "621f80e5a78a07488e04e93b7bba69c8e8aafac7ce544f76e642d1265bdf6b3a",
+      "contract_id": "clio-kit-jarvis-user-v3.2",
+      "contract_sha256": "12f6d349c9d44d8ce3594943dcd4018ec9b6e01ebb0e59d468bb1bb783a1ad5d",
+      "profile": "user",
+      "server_name": "jarvis",
+      "wire_sha256": "bda0abe2b57d5e52ef639bf530e967c3b65072ebc4761d25cd9cbbcf0cd934e9"
     }
   ],
   "schema_version": "clio-kit.mcp-user-contract-index.v1"