clio-kit 2.4.9__tar.gz → 2.5.4__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (500) hide show
  1. {clio_kit-2.4.9 → clio_kit-2.5.4}/PKG-INFO +3 -3
  2. {clio_kit-2.4.9 → clio_kit-2.5.4}/README.md +2 -2
  3. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/adios/server.json +1 -1
  4. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/adios/uv.lock +11 -5
  5. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/arxiv/server.json +1 -1
  6. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/arxiv/uv.lock +9 -3
  7. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/chronolog/server.json +1 -1
  8. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/chronolog/uv.lock +11 -5
  9. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/compression/server.json +1 -1
  10. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/compression/uv.lock +9 -3
  11. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/darshan/server.json +1 -1
  12. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/darshan/uv.lock +3 -3
  13. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/geo/server.json +1 -1
  14. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/geo/uv.lock +3 -3
  15. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/geojson/server.json +1 -1
  16. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/geojson/uv.lock +19 -10
  17. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/hdf5/server.json +1 -1
  18. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/hdf5/uv.lock +11 -5
  19. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/jarvis/.claude-plugin/plugin.json +1 -1
  20. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/jarvis/pyproject.toml +2 -2
  21. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/jarvis/scripts/live_ares_semantic_mcp_probe.py +4 -4
  22. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/jarvis/server.json +3 -3
  23. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/jarvis/src/jarvis_mcp/capabilities/__init__.py +2 -2
  24. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/jarvis/src/jarvis_mcp/capabilities/jarvis_handler.py +7 -1
  25. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/jarvis/src/jarvis_mcp/server.py +473 -27
  26. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/jarvis/uv.lock +8 -8
  27. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/lmod/server.json +1 -1
  28. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/lmod/uv.lock +9 -3
  29. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/ndp/server.json +1 -1
  30. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/ndp/uv.lock +7 -4
  31. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/node-hardware/server.json +1 -1
  32. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/pandas/server.json +1 -1
  33. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parallel-sort/server.json +1 -1
  34. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parallel-sort/uv.lock +3 -3
  35. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/paraview/server.json +1 -1
  36. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/paraview/uv.lock +11 -5
  37. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parquet/server.json +1 -1
  38. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parquet/uv.lock +9 -3
  39. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/plot/server.json +1 -1
  40. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/plot/uv.lock +3 -3
  41. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/sac/server.json +1 -1
  42. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/sac/uv.lock +23 -8
  43. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/scientific-catalog/server.json +1 -1
  44. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/seismic/server.json +1 -1
  45. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/seismic/uv.lock +23 -8
  46. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/server.json +1 -1
  47. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/spack/server.json +1 -1
  48. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/terrain/server.json +1 -1
  49. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/terrain/uv.lock +43 -28
  50. {clio_kit-2.4.9 → clio_kit-2.5.4}/mcp-server-versions.toml +1 -1
  51. {clio_kit-2.4.9 → clio_kit-2.5.4}/pyproject.toml +1 -1
  52. {clio_kit-2.4.9 → clio_kit-2.5.4}/src/clio_kit/_mcp_contracts/index.json +14 -5
  53. clio_kit-2.5.4/src/clio_kit/_mcp_contracts/jarvis-user-v3.2.json +2407 -0
  54. {clio_kit-2.4.9 → clio_kit-2.5.4}/src/clio_kit/mcp_contracts.py +6 -3
  55. {clio_kit-2.4.9 → clio_kit-2.5.4}/.gitignore +0 -0
  56. {clio_kit-2.4.9 → clio_kit-2.5.4}/LICENSE +0 -0
  57. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/README.md +0 -0
  58. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/pyproject.toml +0 -0
  59. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/__init__.py +0 -0
  60. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/api/__init__.py +0 -0
  61. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/api/app.py +0 -0
  62. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/cli/__init__.py +0 -0
  63. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/cli/main.py +0 -0
  64. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/connectors/__init__.py +0 -0
  65. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/connectors/filesystem/__init__.py +0 -0
  66. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/connectors/filesystem/connector.py +0 -0
  67. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/connectors/graph_store/__init__.py +0 -0
  68. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/connectors/graph_store/connector.py +0 -0
  69. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/connectors/kv_log_store/__init__.py +0 -0
  70. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/connectors/kv_log_store/connector.py +0 -0
  71. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/connectors/object_store/__init__.py +0 -0
  72. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/connectors/object_store/connector.py +0 -0
  73. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/connectors/vector_store/__init__.py +0 -0
  74. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/connectors/vector_store/connector.py +0 -0
  75. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/core/__init__.py +0 -0
  76. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/core/connectors.py +0 -0
  77. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/core/namespace_config.py +0 -0
  78. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/core/namespace_registry.py +0 -0
  79. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/core/seeding.py +0 -0
  80. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/evals/__init__.py +0 -0
  81. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/evals/quality_gate.py +0 -0
  82. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/evals/scientific.py +0 -0
  83. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/indexing/__init__.py +0 -0
  84. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/indexing/lexical.py +0 -0
  85. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/indexing/scientific.py +0 -0
  86. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/indexing/text_features.py +0 -0
  87. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/jobs.py +0 -0
  88. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/models/__init__.py +0 -0
  89. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/models/contracts.py +0 -0
  90. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/retrieval/__init__.py +0 -0
  91. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/retrieval/ann.py +0 -0
  92. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/retrieval/capabilities.py +0 -0
  93. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/retrieval/coordinator.py +0 -0
  94. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/retrieval/rerank.py +0 -0
  95. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/retrieval/scientific.py +0 -0
  96. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/retry.py +0 -0
  97. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/storage/__init__.py +0 -0
  98. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/storage/contracts.py +0 -0
  99. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/storage/duckdb_store.py +0 -0
  100. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/tasks.py +0 -0
  101. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/src/clio_agentic_search/telemetry/__init__.py +0 -0
  102. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-agentic-search/uv.lock +0 -0
  103. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-clients/wrp_bin/README.md +0 -0
  104. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/adios/.claude-plugin/plugin.json +0 -0
  105. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/adios/.mcp.json +0 -0
  106. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/adios/README.md +0 -0
  107. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/adios/docs/adios_setup.md +0 -0
  108. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/adios/docs/basic_install.md +0 -0
  109. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/adios/docs/example_uses.md +0 -0
  110. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/adios/pyproject.toml +0 -0
  111. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/adios/sample_data/data1.bp/data.0 +0 -0
  112. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/adios/sample_data/data1.bp/md.0 +0 -0
  113. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/adios/sample_data/data1.bp/md.idx +0 -0
  114. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/adios/sample_data/data1.bp/mmd.0 +0 -0
  115. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/adios/sample_data/data2.bp/data.0 +0 -0
  116. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/adios/sample_data/data2.bp/md.0 +0 -0
  117. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/adios/sample_data/data2.bp/md.idx +0 -0
  118. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/adios/sample_data/data2.bp/mmd.0 +0 -0
  119. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/adios/sample_data/data3.bp/data.0 +0 -0
  120. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/adios/sample_data/data3.bp/md.0 +0 -0
  121. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/adios/sample_data/data3.bp/md.idx +0 -0
  122. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/adios/sample_data/data3.bp/mmd.0 +0 -0
  123. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/adios/sample_data/data4.bp/data.0 +0 -0
  124. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/adios/sample_data/data4.bp/md.0 +0 -0
  125. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/adios/sample_data/data4.bp/md.idx +0 -0
  126. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/adios/sample_data/data4.bp/mmd.0 +0 -0
  127. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/adios/src/adios_mcp/__init__.py +0 -0
  128. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/adios/src/adios_mcp/implementation/__init__.py +0 -0
  129. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/adios/src/adios_mcp/implementation/bp5_attributes.py +0 -0
  130. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/adios/src/adios_mcp/implementation/bp5_inspect_variables.py +0 -0
  131. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/adios/src/adios_mcp/implementation/bp5_inspect_variables_at_step.py +0 -0
  132. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/adios/src/adios_mcp/implementation/bp5_list.py +0 -0
  133. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/adios/src/adios_mcp/implementation/bp5_read_variable_at_step.py +0 -0
  134. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/adios/src/adios_mcp/mcp_handlers.py +0 -0
  135. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/adios/src/adios_mcp/server.py +0 -0
  136. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/arxiv/.claude-plugin/plugin.json +0 -0
  137. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/arxiv/.mcp.json +0 -0
  138. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/arxiv/README.md +0 -0
  139. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/arxiv/demo.py +0 -0
  140. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/arxiv/docs/basic_install.md +0 -0
  141. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/arxiv/pyproject.toml +0 -0
  142. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/arxiv/src/arxiv_mcp/__init__.py +0 -0
  143. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/arxiv/src/arxiv_mcp/capabilities/__init__.py +0 -0
  144. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/arxiv/src/arxiv_mcp/capabilities/arxiv_base.py +0 -0
  145. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/arxiv/src/arxiv_mcp/capabilities/category_search.py +0 -0
  146. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/arxiv/src/arxiv_mcp/capabilities/date_search.py +0 -0
  147. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/arxiv/src/arxiv_mcp/capabilities/download_paper.py +0 -0
  148. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/arxiv/src/arxiv_mcp/capabilities/export_utils.py +0 -0
  149. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/arxiv/src/arxiv_mcp/capabilities/paper_details.py +0 -0
  150. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/arxiv/src/arxiv_mcp/capabilities/text_search.py +0 -0
  151. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/arxiv/src/arxiv_mcp/mcp_handlers.py +0 -0
  152. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/arxiv/src/arxiv_mcp/server.py +0 -0
  153. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/chronolog/.claude-plugin/plugin.json +0 -0
  154. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/chronolog/.mcp.json +0 -0
  155. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/chronolog/README.md +0 -0
  156. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/chronolog/assets/mcp-client.png +0 -0
  157. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/chronolog/assets/mcp-clientstartchronolog.png +0 -0
  158. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/chronolog/assets/mcp-retievecopilot.png +0 -0
  159. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/chronolog/assets/mcp-retrieve-diseasepred.png +0 -0
  160. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/chronolog/docs/Chronolog_setup.md +0 -0
  161. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/chronolog/pyproject.toml +0 -0
  162. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/chronolog/src/chronomcp/__init__.py +0 -0
  163. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/chronolog/src/chronomcp/capabilities/__init__.py +0 -0
  164. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/chronolog/src/chronomcp/capabilities/record_handler.py +0 -0
  165. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/chronolog/src/chronomcp/capabilities/retrieve_handler.py +0 -0
  166. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/chronolog/src/chronomcp/capabilities/start_handler.py +0 -0
  167. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/chronolog/src/chronomcp/capabilities/stop_handler.py +0 -0
  168. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/chronolog/src/chronomcp/reader_script/CMakeLists.txt +0 -0
  169. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/chronolog/src/chronomcp/reader_script/HDF5ArchiveReadingAgent.h +0 -0
  170. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/chronolog/src/chronomcp/reader_script/reader.cpp +0 -0
  171. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/chronolog/src/chronomcp/server.py +0 -0
  172. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/chronolog/src/chronomcp/utils/config.py +0 -0
  173. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/chronolog/src/chronomcp/utils/helpers.py +0 -0
  174. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/compression/.claude-plugin/plugin.json +0 -0
  175. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/compression/.mcp.json +0 -0
  176. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/compression/README.md +0 -0
  177. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/compression/data/sample_data.csv +0 -0
  178. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/compression/data/sample_log.txt +0 -0
  179. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/compression/pyproject.toml +0 -0
  180. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/compression/pytest.ini +0 -0
  181. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/compression/src/compression_mcp/__init__.py +0 -0
  182. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/compression/src/compression_mcp/capabilities/__init__.py +0 -0
  183. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/compression/src/compression_mcp/capabilities/compression_base.py +0 -0
  184. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/compression/src/compression_mcp/mcp_handlers.py +0 -0
  185. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/compression/src/compression_mcp/server.py +0 -0
  186. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/darshan/.claude-plugin/plugin.json +0 -0
  187. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/darshan/.mcp.json +0 -0
  188. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/darshan/README.md +0 -0
  189. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/darshan/pyproject.toml +0 -0
  190. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/darshan/src/darshan_mcp/__init__.py +0 -0
  191. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/darshan/src/darshan_mcp/capabilities/__init__.py +0 -0
  192. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/darshan/src/darshan_mcp/capabilities/darshan_parser.py +0 -0
  193. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/darshan/src/darshan_mcp/server.py +0 -0
  194. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/geo/.claude-plugin/plugin.json +0 -0
  195. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/geo/.mcp.json +0 -0
  196. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/geo/README.md +0 -0
  197. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/geo/pyproject.toml +0 -0
  198. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/geo/src/geo_mcp/__init__.py +0 -0
  199. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/geo/src/geo_mcp/implementation/__init__.py +0 -0
  200. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/geo/src/geo_mcp/implementation/arcgis.py +0 -0
  201. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/geo/src/geo_mcp/implementation/geocode.py +0 -0
  202. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/geo/src/geo_mcp/implementation/map_render.py +0 -0
  203. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/geo/src/geo_mcp/implementation/overlap.py +0 -0
  204. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/geo/src/geo_mcp/implementation/proximity.py +0 -0
  205. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/geo/src/geo_mcp/server.py +0 -0
  206. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/geojson/.claude-plugin/plugin.json +0 -0
  207. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/geojson/.mcp.json +0 -0
  208. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/geojson/README.md +0 -0
  209. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/geojson/pyproject.toml +0 -0
  210. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/geojson/src/geojson_mcp/__init__.py +0 -0
  211. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/geojson/src/geojson_mcp/implementation/__init__.py +0 -0
  212. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/geojson/src/geojson_mcp/implementation/inspect.py +0 -0
  213. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/geojson/src/geojson_mcp/server.py +0 -0
  214. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/hdf5/.claude-plugin/plugin.json +0 -0
  215. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/hdf5/.mcp.json +0 -0
  216. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/hdf5/README.md +0 -0
  217. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/hdf5/TESTING.md +0 -0
  218. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/hdf5/docs/ARCHITECTURE.md +0 -0
  219. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/hdf5/docs/EXAMPLES.md +0 -0
  220. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/hdf5/docs/MIGRATION.md +0 -0
  221. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/hdf5/docs/TOOLS.md +0 -0
  222. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/hdf5/docs/TRANSPORTS.md +0 -0
  223. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/hdf5/examples/README.md +0 -0
  224. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/hdf5/examples/create_demo_data.py +0 -0
  225. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/hdf5/examples/demo_script.py +0 -0
  226. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/hdf5/pyproject.toml +0 -0
  227. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/hdf5/src/hdf5_mcp/__init__.py +0 -0
  228. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/hdf5/src/hdf5_mcp/config.py +0 -0
  229. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/hdf5/src/hdf5_mcp/resources.py +0 -0
  230. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/hdf5/src/hdf5_mcp/server.py +0 -0
  231. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/hdf5/src/hdf5_mcp/utils.py +0 -0
  232. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/jarvis/.mcp.json +0 -0
  233. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/jarvis/README.md +0 -0
  234. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/jarvis/docs/GUIDE.md +0 -0
  235. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/jarvis/docs/assets/Screenshot 2025-05-15 160800.png +0 -0
  236. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/jarvis/docs/assets/Screenshot 2025-05-15 162219.png +0 -0
  237. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/jarvis/docs/assets/Screenshot 2025-05-15 162322.png +0 -0
  238. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/jarvis/docs/assets/Screenshot 2025-05-15 162545.png +0 -0
  239. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/jarvis/docs/assets/Screenshot 2025-05-15 162922.png +0 -0
  240. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/jarvis/docs/assets/Screenshot 2025-05-15 163023.png +0 -0
  241. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/jarvis/docs/assets/Screenshot 2025-05-15 163516.png +0 -0
  242. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/jarvis/docs/assets/Screenshot 2025-05-15 163651.png +0 -0
  243. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/jarvis/docs/assets/Screenshot 2025-05-15 163759.png +0 -0
  244. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/jarvis/docs/basic_install.md +0 -0
  245. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/jarvis/requirements.txt +0 -0
  246. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/jarvis/src/jarvis_mcp/__init__.py +0 -0
  247. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/jarvis/src/jarvis_mcp/admin_server.py +0 -0
  248. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/jarvis/src/jarvis_mcp/artifacts.py +0 -0
  249. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/jarvis/src/jarvis_mcp/progress.py +0 -0
  250. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/jarvis/src/jarvis_mcp/user_server.py +0 -0
  251. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/jarvis/src/jarvis_mcp/windows_job.py +0 -0
  252. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/lmod/.claude-plugin/plugin.json +0 -0
  253. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/lmod/.mcp.json +0 -0
  254. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/lmod/README.md +0 -0
  255. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/lmod/pyproject.toml +0 -0
  256. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/lmod/src/lmod_mcp/__init__.py +0 -0
  257. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/lmod/src/lmod_mcp/capabilities/__init__.py +0 -0
  258. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/lmod/src/lmod_mcp/capabilities/lmod_handler.py +0 -0
  259. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/lmod/src/lmod_mcp/server.py +0 -0
  260. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/ndp/.claude-plugin/plugin.json +0 -0
  261. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/ndp/.mcp.json +0 -0
  262. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/ndp/README.md +0 -0
  263. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/ndp/docs/mcp_development_guide.md +0 -0
  264. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/ndp/docs/ndp_api.md +0 -0
  265. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/ndp/docs/ndp_docs.md +0 -0
  266. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/ndp/pyproject.toml +0 -0
  267. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/ndp/src/ndp_mcp/__init__.py +0 -0
  268. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/ndp/src/ndp_mcp/server.py +0 -0
  269. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/node-hardware/.claude-plugin/plugin.json +0 -0
  270. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/node-hardware/.mcp.json +0 -0
  271. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/node-hardware/README.md +0 -0
  272. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/node-hardware/pyproject.toml +0 -0
  273. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/node-hardware/src/node_hardware_mcp/__init__.py +0 -0
  274. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/node-hardware/src/node_hardware_mcp/capabilities/__init__.py +0 -0
  275. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/node-hardware/src/node_hardware_mcp/capabilities/cpu_info.py +0 -0
  276. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/node-hardware/src/node_hardware_mcp/capabilities/disk_info.py +0 -0
  277. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/node-hardware/src/node_hardware_mcp/capabilities/gpu_info.py +0 -0
  278. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/node-hardware/src/node_hardware_mcp/capabilities/hardware_summary.py +0 -0
  279. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/node-hardware/src/node_hardware_mcp/capabilities/memory_info.py +0 -0
  280. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/node-hardware/src/node_hardware_mcp/capabilities/network_info.py +0 -0
  281. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/node-hardware/src/node_hardware_mcp/capabilities/performance_monitor.py +0 -0
  282. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/node-hardware/src/node_hardware_mcp/capabilities/process_info.py +0 -0
  283. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/node-hardware/src/node_hardware_mcp/capabilities/remote_node_info.py +0 -0
  284. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/node-hardware/src/node_hardware_mcp/capabilities/sensor_info.py +0 -0
  285. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/node-hardware/src/node_hardware_mcp/capabilities/system_info.py +0 -0
  286. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/node-hardware/src/node_hardware_mcp/capabilities/utils.py +0 -0
  287. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/node-hardware/src/node_hardware_mcp/mcp_handlers.py +0 -0
  288. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/node-hardware/src/node_hardware_mcp/server.py +0 -0
  289. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/node-hardware/src/node_hardware_mcp/utils/__init__.py +0 -0
  290. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/node-hardware/src/node_hardware_mcp/utils/output_formatter.py +0 -0
  291. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/node-hardware/uv.lock +0 -0
  292. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/pandas/.claude-plugin/plugin.json +0 -0
  293. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/pandas/.mcp.json +0 -0
  294. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/pandas/README.md +0 -0
  295. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/pandas/example_script/create_sample_data.py +0 -0
  296. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/pandas/pyproject.toml +0 -0
  297. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/pandas/pytest.ini +0 -0
  298. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/pandas/src/pandas_mcp/__init__.py +0 -0
  299. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/pandas/src/pandas_mcp/implementation/__init__.py +0 -0
  300. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/pandas/src/pandas_mcp/implementation/csv_profiling.py +0 -0
  301. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/pandas/src/pandas_mcp/implementation/data_cleaning.py +0 -0
  302. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/pandas/src/pandas_mcp/implementation/data_io.py +0 -0
  303. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/pandas/src/pandas_mcp/implementation/data_profiling.py +0 -0
  304. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/pandas/src/pandas_mcp/implementation/filtering.py +0 -0
  305. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/pandas/src/pandas_mcp/implementation/memory_optimization.py +0 -0
  306. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/pandas/src/pandas_mcp/implementation/output_formatter.py +0 -0
  307. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/pandas/src/pandas_mcp/implementation/pandas_statistics.py +0 -0
  308. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/pandas/src/pandas_mcp/implementation/time_series.py +0 -0
  309. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/pandas/src/pandas_mcp/implementation/transformations.py +0 -0
  310. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/pandas/src/pandas_mcp/implementation/validation.py +0 -0
  311. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/pandas/src/pandas_mcp/mcp_handlers.py +0 -0
  312. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/pandas/src/pandas_mcp/server.py +0 -0
  313. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/pandas/uv.lock +0 -0
  314. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parallel-sort/.claude-plugin/plugin.json +0 -0
  315. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parallel-sort/.mcp.json +0 -0
  316. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parallel-sort/README.md +0 -0
  317. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parallel-sort/USAGE_GUIDE.md +0 -0
  318. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parallel-sort/pyproject.toml +0 -0
  319. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parallel-sort/pytest.ini +0 -0
  320. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parallel-sort/src/parallel_sort_mcp/__init__.py +0 -0
  321. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parallel-sort/src/parallel_sort_mcp/implementation/__init__.py +0 -0
  322. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parallel-sort/src/parallel_sort_mcp/implementation/export_handler.py +0 -0
  323. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parallel-sort/src/parallel_sort_mcp/implementation/filter_handler.py +0 -0
  324. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parallel-sort/src/parallel_sort_mcp/implementation/parallel_processor.py +0 -0
  325. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parallel-sort/src/parallel_sort_mcp/implementation/pattern_detection.py +0 -0
  326. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parallel-sort/src/parallel_sort_mcp/implementation/sort_handler.py +0 -0
  327. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parallel-sort/src/parallel_sort_mcp/implementation/statistics_handler.py +0 -0
  328. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parallel-sort/src/parallel_sort_mcp/mcp_handlers.py +0 -0
  329. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parallel-sort/src/parallel_sort_mcp/server.py +0 -0
  330. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/paraview/.claude-plugin/plugin.json +0 -0
  331. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/paraview/.mcp.json +0 -0
  332. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/paraview/LICENSE +0 -0
  333. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/paraview/README.md +0 -0
  334. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/paraview/USAGE_README.md +0 -0
  335. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/paraview/prompt.md +0 -0
  336. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/paraview/pyproject.toml +0 -0
  337. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/paraview/pytest.ini +0 -0
  338. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/paraview/requirements.txt +0 -0
  339. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/paraview/scripts/__init__.py +0 -0
  340. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/paraview/scripts/automate_setup.py +0 -0
  341. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/paraview/scripts/build_paraview.py +0 -0
  342. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/paraview/scripts/configure_paraview.py +0 -0
  343. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/paraview/scripts/install_deps.py +0 -0
  344. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/paraview/scripts/installation_example.py +0 -0
  345. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/paraview/scripts/launch_gui.py +0 -0
  346. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/paraview/scripts/launch_server.py +0 -0
  347. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/paraview/scripts/test_installation.py +0 -0
  348. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/paraview/src/paraview_mcp/__init__.py +0 -0
  349. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/paraview/src/paraview_mcp/implementation/__init__.py +0 -0
  350. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/paraview/src/paraview_mcp/implementation/paraview_capabilities.py +0 -0
  351. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/paraview/src/paraview_mcp/server.py +0 -0
  352. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/paraview/src/paraview_mcp/viz.html +0 -0
  353. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parquet/.claude-plugin/plugin.json +0 -0
  354. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parquet/.mcp.json +0 -0
  355. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parquet/README.md +0 -0
  356. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parquet/data/data.csv +0 -0
  357. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parquet/data/huge_log.txt +0 -0
  358. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parquet/data/small_log.txt +0 -0
  359. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parquet/data/weather_data.parquet +0 -0
  360. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parquet/datasets/batch_1.parquet +0 -0
  361. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parquet/datasets/batch_large_strings.parquet +0 -0
  362. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parquet/evaluation.xml +0 -0
  363. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parquet/images/compress.png +0 -0
  364. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parquet/images/getResource.png +0 -0
  365. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parquet/images/listResources.png +0 -0
  366. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parquet/images/listTools.png +0 -0
  367. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parquet/images/pandas.png +0 -0
  368. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parquet/images/parquet.png +0 -0
  369. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parquet/images/sort.png +0 -0
  370. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parquet/images/tests.png +0 -0
  371. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parquet/pyproject.toml +0 -0
  372. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parquet/pytest.ini +0 -0
  373. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parquet/src/__init__.py +0 -0
  374. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parquet/src/parquet_mcp/__init__.py +0 -0
  375. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parquet/src/parquet_mcp/capabilities/__init__.py +0 -0
  376. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parquet/src/parquet_mcp/capabilities/parquet_handler.py +0 -0
  377. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/parquet/src/parquet_mcp/server.py +0 -0
  378. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/plot/.claude-plugin/plugin.json +0 -0
  379. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/plot/.mcp.json +0 -0
  380. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/plot/README.md +0 -0
  381. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/plot/data/sample_data.csv +0 -0
  382. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/plot/data/temperature.csv +0 -0
  383. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/plot/pyproject.toml +0 -0
  384. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/plot/pytest.ini +0 -0
  385. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/plot/src/plot_mcp/__init__.py +0 -0
  386. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/plot/src/plot_mcp/implementation/__init__.py +0 -0
  387. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/plot/src/plot_mcp/implementation/plot_capabilities.py +0 -0
  388. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/plot/src/plot_mcp/server.py +0 -0
  389. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/sac/.claude-plugin/plugin.json +0 -0
  390. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/sac/.mcp.json +0 -0
  391. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/sac/README.md +0 -0
  392. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/sac/pyproject.toml +0 -0
  393. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/sac/src/sac_mcp/__init__.py +0 -0
  394. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/sac/src/sac_mcp/implementation/__init__.py +0 -0
  395. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/sac/src/sac_mcp/implementation/analysis.py +0 -0
  396. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/sac/src/sac_mcp/implementation/sac_io.py +0 -0
  397. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/sac/src/sac_mcp/server.py +0 -0
  398. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/scientific-catalog/.claude-plugin/plugin.json +0 -0
  399. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/scientific-catalog/.mcp.json +0 -0
  400. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/scientific-catalog/README.md +0 -0
  401. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/scientific-catalog/pyproject.toml +0 -0
  402. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/scientific-catalog/src/scientific_catalog_mcp/__init__.py +0 -0
  403. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/scientific-catalog/src/scientific_catalog_mcp/backend.py +0 -0
  404. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/scientific-catalog/src/scientific_catalog_mcp/models.py +0 -0
  405. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/scientific-catalog/src/scientific_catalog_mcp/server.py +0 -0
  406. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/scientific-catalog/uv.lock +0 -0
  407. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/seismic/.claude-plugin/plugin.json +0 -0
  408. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/seismic/.mcp.json +0 -0
  409. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/seismic/README.md +0 -0
  410. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/seismic/pyproject.toml +0 -0
  411. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/seismic/src/seismic_mcp/__init__.py +0 -0
  412. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/seismic/src/seismic_mcp/implementation/__init__.py +0 -0
  413. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/seismic/src/seismic_mcp/implementation/analysis.py +0 -0
  414. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/seismic/src/seismic_mcp/implementation/catalog_io.py +0 -0
  415. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/seismic/src/seismic_mcp/implementation/plotting.py +0 -0
  416. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/seismic/src/seismic_mcp/server.py +0 -0
  417. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/.claude-plugin/plugin.json +0 -0
  418. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/.mcp.json +0 -0
  419. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/README.md +0 -0
  420. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/docs/MCP_SERVER_GUIDE.md +0 -0
  421. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/docs/agent-contract-v3.md +0 -0
  422. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/docs/basic_install.md +0 -0
  423. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/docs/run.md +0 -0
  424. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/docs/slurm_installation/NATIVE_SLURM_SUCCESS_REPORT.md +0 -0
  425. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/docs/slurm_installation/SLURM_INSTALLATION_GUIDE.md +0 -0
  426. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/docs/slurm_installation/final_verification.sh +0 -0
  427. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/docs/slurm_installation/install_slurm.sh +0 -0
  428. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/docs/slurm_installation/parallel_job.sh +0 -0
  429. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/docs/slurm_installation/quick_native_test.sh +0 -0
  430. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/docs/slurm_installation/slurm.conf +0 -0
  431. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/docs/slurm_installation/slurm_config.conf +0 -0
  432. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/example_scripts/README.md +0 -0
  433. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/example_scripts/SLURM_SCRIPT_GENERATION_PROMPT.md +0 -0
  434. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/example_scripts/array_job.sh +0 -0
  435. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/example_scripts/data_processing.sh +0 -0
  436. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/example_scripts/generate_slurm_script.sh +0 -0
  437. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/example_scripts/hello_world.sh +0 -0
  438. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/example_scripts/long_simulation.sh +0 -0
  439. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/example_scripts/python_computation.sh +0 -0
  440. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/logs/README.md +0 -0
  441. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/pyproject.toml +0 -0
  442. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/pytest.ini +0 -0
  443. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/src/slurm_mcp/__init__.py +0 -0
  444. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/src/slurm_mcp/agent_contract.py +0 -0
  445. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/src/slurm_mcp/implementation/__init__.py +0 -0
  446. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/src/slurm_mcp/implementation/array_jobs.py +0 -0
  447. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/src/slurm_mcp/implementation/cluster_info.py +0 -0
  448. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/src/slurm_mcp/implementation/job_cancellation.py +0 -0
  449. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/src/slurm_mcp/implementation/job_details.py +0 -0
  450. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/src/slurm_mcp/implementation/job_listing.py +0 -0
  451. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/src/slurm_mcp/implementation/job_output.py +0 -0
  452. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/src/slurm_mcp/implementation/job_status.py +0 -0
  453. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/src/slurm_mcp/implementation/job_submission.py +0 -0
  454. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/src/slurm_mcp/implementation/node_allocation.py +0 -0
  455. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/src/slurm_mcp/implementation/node_info.py +0 -0
  456. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/src/slurm_mcp/implementation/queue_info.py +0 -0
  457. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/src/slurm_mcp/implementation/slurm_handler.py +0 -0
  458. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/src/slurm_mcp/implementation/utils.py +0 -0
  459. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/src/slurm_mcp/mcp_handlers.py +0 -0
  460. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/src/slurm_mcp/server.py +0 -0
  461. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/slurm/uv.lock +0 -0
  462. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/spack/.claude-plugin/plugin.json +0 -0
  463. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/spack/.mcp.json +0 -0
  464. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/spack/README.md +0 -0
  465. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/spack/pyproject.toml +0 -0
  466. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/spack/src/spack_mcp/__init__.py +0 -0
  467. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/spack/src/spack_mcp/admin_server.py +0 -0
  468. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/spack/src/spack_mcp/backend.py +0 -0
  469. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/spack/src/spack_mcp/server.py +0 -0
  470. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/spack/src/spack_mcp/user_server.py +0 -0
  471. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/spack/src/spack_mcp/windows_job.py +0 -0
  472. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/spack/uv.lock +0 -0
  473. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/terrain/.claude-plugin/plugin.json +0 -0
  474. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/terrain/.mcp.json +0 -0
  475. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/terrain/README.md +0 -0
  476. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/terrain/pyproject.toml +0 -0
  477. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/terrain/src/terrain_mcp/__init__.py +0 -0
  478. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/terrain/src/terrain_mcp/implementation/__init__.py +0 -0
  479. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/terrain/src/terrain_mcp/implementation/_common.py +0 -0
  480. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/terrain/src/terrain_mcp/implementation/dem.py +0 -0
  481. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/terrain/src/terrain_mcp/implementation/errors.py +0 -0
  482. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/terrain/src/terrain_mcp/implementation/pointcloud.py +0 -0
  483. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-mcp-servers/terrain/src/terrain_mcp/server.py +0 -0
  484. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-website/README.md +0 -0
  485. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-website/src/components/HomepageFeatures/index.js +0 -0
  486. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-website/src/components/HomepageFeatures/styles.module.css +0 -0
  487. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-website/src/components/MCPDetail/index.js +0 -0
  488. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-website/src/components/MCPDetail/styles.module.css +0 -0
  489. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-website/src/components/MCPShowcase/index.js +0 -0
  490. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-website/src/components/MCPShowcase/styles.module.css +0 -0
  491. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-website/src/css/custom.css +0 -0
  492. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-website/src/data/mcpData.js +0 -0
  493. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-website/src/pages/index.js +0 -0
  494. {clio_kit-2.4.9 → clio_kit-2.5.4}/clio-kit-website/src/pages/index.module.css +0 -0
  495. {clio_kit-2.4.9 → clio_kit-2.5.4}/src/clio_kit/__init__.py +0 -0
  496. {clio_kit-2.4.9 → clio_kit-2.5.4}/src/clio_kit/_mcp_contracts/jarvis-user-v3.1.json +0 -0
  497. {clio_kit-2.4.9 → clio_kit-2.5.4}/src/clio_kit/_mcp_contracts/jarvis-user-v3.json +0 -0
  498. {clio_kit-2.4.9 → clio_kit-2.5.4}/src/clio_kit/_mcp_contracts/scientific-catalog-user-v1.json +0 -0
  499. {clio_kit-2.4.9 → clio_kit-2.5.4}/src/clio_kit/_mcp_contracts/slurm-user-v3.json +0 -0
  500. {clio_kit-2.4.9 → clio_kit-2.5.4}/src/clio_kit/_mcp_contracts/spack-user-v2.json +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: clio-kit
3
- Version: 2.4.9
3
+ Version: 2.5.4
4
4
  Summary: CLIO Kit - MCP Servers, Clients, and Tools for AI Agents
5
5
  Project-URL: Homepage, https://github.com/iowarp/clio-kit
6
6
  Project-URL: Repository, https://github.com/iowarp/clio-kit
@@ -147,7 +147,7 @@ federation gates:
147
147
 
148
148
  ```bash
149
149
  clio-kit mcp-contracts
150
- clio-kit mcp-contract clio-kit-jarvis-user-v3.1
150
+ clio-kit mcp-contract clio-kit-jarvis-user-v3.2
151
151
  clio-kit mcp-contract clio-kit-slurm-user-v3
152
152
  clio-kit mcp-contract clio-kit-spack-user-v2
153
153
  clio-kit mcp-contract clio-kit-scientific-catalog-user-v1
@@ -273,7 +273,7 @@ Agents should discover first, install only when needed, then pass the exact
273
273
  | **`geo`** | 2.2.3 | Geospatial | Render GeoJSON vector layers with basemaps | `clio-kit mcp-server geo` |
274
274
  | **`geojson`** | 2.2.3 | Geospatial | Inspect, validate, and summarize GeoJSON | `clio-kit mcp-server geojson` |
275
275
  | **`hdf5`** | 2.2.3 | Data I/O | HPC-optimized scientific data with 27 tools, AI insights, caching, streaming | `clio-kit mcp-server hdf5` |
276
- | **`jarvis`** | 3.1.1 | Workflow | Durable pipeline, progress, artifact, and service-runtime management | `clio-kit mcp-server jarvis` |
276
+ | **`jarvis`** | 3.2.2 | Workflow | Durable pipeline, bounded package discovery, progress, artifact, and service-runtime management | `clio-kit mcp-server jarvis` |
277
277
  | **`lmod`** | 2.2.3 | Environment | Environment module management | `clio-kit mcp-server lmod` |
278
278
  | **`ndp`** | 2.2.3 | Data Protocol | Search and discover datasets across CKAN instances | `clio-kit mcp-server ndp` |
279
279
  | **`node-hardware`** | 2.2.3 | System | System hardware information | `clio-kit mcp-server node-hardware` |
@@ -121,7 +121,7 @@ federation gates:
121
121
 
122
122
  ```bash
123
123
  clio-kit mcp-contracts
124
- clio-kit mcp-contract clio-kit-jarvis-user-v3.1
124
+ clio-kit mcp-contract clio-kit-jarvis-user-v3.2
125
125
  clio-kit mcp-contract clio-kit-slurm-user-v3
126
126
  clio-kit mcp-contract clio-kit-spack-user-v2
127
127
  clio-kit mcp-contract clio-kit-scientific-catalog-user-v1
@@ -247,7 +247,7 @@ Agents should discover first, install only when needed, then pass the exact
247
247
  | **`geo`** | 2.2.3 | Geospatial | Render GeoJSON vector layers with basemaps | `clio-kit mcp-server geo` |
248
248
  | **`geojson`** | 2.2.3 | Geospatial | Inspect, validate, and summarize GeoJSON | `clio-kit mcp-server geojson` |
249
249
  | **`hdf5`** | 2.2.3 | Data I/O | HPC-optimized scientific data with 27 tools, AI insights, caching, streaming | `clio-kit mcp-server hdf5` |
250
- | **`jarvis`** | 3.1.1 | Workflow | Durable pipeline, progress, artifact, and service-runtime management | `clio-kit mcp-server jarvis` |
250
+ | **`jarvis`** | 3.2.2 | Workflow | Durable pipeline, bounded package discovery, progress, artifact, and service-runtime management | `clio-kit mcp-server jarvis` |
251
251
  | **`lmod`** | 2.2.3 | Environment | Environment module management | `clio-kit mcp-server lmod` |
252
252
  | **`ndp`** | 2.2.3 | Data Protocol | Search and discover datasets across CKAN instances | `clio-kit mcp-server ndp` |
253
253
  | **`node-hardware`** | 2.2.3 | System | System hardware information | `clio-kit mcp-server node-hardware` |
@@ -12,7 +12,7 @@
12
12
  {
13
13
  "registryType": "pypi",
14
14
  "identifier": "clio-kit",
15
- "version": "2.4.9",
15
+ "version": "2.5.4",
16
16
  "transport": {
17
17
  "type": "stdio"
18
18
  },
@@ -2,7 +2,10 @@ version = 1
2
2
  revision = 3
3
3
  requires-python = ">=3.10"
4
4
  resolution-markers = [
5
- "python_full_version >= '3.11'",
5
+ "python_full_version >= '3.14' and sys_platform == 'win32'",
6
+ "python_full_version >= '3.14' and sys_platform != 'win32'",
7
+ "python_full_version >= '3.11' and python_full_version < '3.14' and sys_platform == 'win32'",
8
+ "python_full_version >= '3.11' and python_full_version < '3.14' and sys_platform != 'win32'",
6
9
  "python_full_version < '3.11'",
7
10
  ]
8
11
 
@@ -1100,7 +1103,7 @@ wheels = [
1100
1103
 
1101
1104
  [[package]]
1102
1105
  name = "mcp"
1103
- version = "1.26.0"
1106
+ version = "1.28.1"
1104
1107
  source = { registry = "https://pypi.org/simple" }
1105
1108
  dependencies = [
1106
1109
  { name = "anyio" },
@@ -1118,9 +1121,9 @@ dependencies = [
1118
1121
  { name = "typing-inspection" },
1119
1122
  { name = "uvicorn", marker = "sys_platform != 'emscripten'" },
1120
1123
  ]
1121
- sdist = { url = "https://files.pythonhosted.org/packages/fc/6d/62e76bbb8144d6ed86e202b5edd8a4cb631e7c8130f3f4893c3f90262b10/mcp-1.26.0.tar.gz", hash = "sha256:db6e2ef491eecc1a0d93711a76f28dec2e05999f93afd48795da1c1137142c66", size = 608005, upload-time = "2026-01-24T19:40:32.468Z" }
1124
+ sdist = { url = "https://files.pythonhosted.org/packages/6e/77/9450b8f251a13affb6281997d0523c4615f8a8b35d0b21ff30db3a5aac9d/mcp-1.28.1.tar.gz", hash = "sha256:d51e36a5f5644faea4f85ea649bfffa6bc6c26770d42798ad6a3de3d2ba69683", size = 638501, upload-time = "2026-06-26T12:57:29.093Z" }
1122
1125
  wheels = [
1123
- { url = "https://files.pythonhosted.org/packages/fd/d9/eaa1f80170d2b7c5ba23f3b59f766f3a0bb41155fbc32a69adfa1adaaef9/mcp-1.26.0-py3-none-any.whl", hash = "sha256:904a21c33c25aa98ddbeb47273033c435e595bbacfdb177f4bd87f6dceebe1ca", size = 233615, upload-time = "2026-01-24T19:40:30.652Z" },
1126
+ { url = "https://files.pythonhosted.org/packages/e2/5e/d118fce19f87a2e7d8101c35c8ae0ec289098a4df0ff244cec23e415aca0/mcp-1.28.1-py3-none-any.whl", hash = "sha256:2726bca5e7193f61c5dde8b12500a6de2d9acf6d1a1c0be9e8c2e706437991df", size = 222620, upload-time = "2026-06-26T12:57:27.218Z" },
1124
1127
  ]
1125
1128
 
1126
1129
  [[package]]
@@ -1339,7 +1342,10 @@ name = "numpy"
1339
1342
  version = "2.4.2"
1340
1343
  source = { registry = "https://pypi.org/simple" }
1341
1344
  resolution-markers = [
1342
- "python_full_version >= '3.11'",
1345
+ "python_full_version >= '3.14' and sys_platform == 'win32'",
1346
+ "python_full_version >= '3.14' and sys_platform != 'win32'",
1347
+ "python_full_version >= '3.11' and python_full_version < '3.14' and sys_platform == 'win32'",
1348
+ "python_full_version >= '3.11' and python_full_version < '3.14' and sys_platform != 'win32'",
1343
1349
  ]
1344
1350
  sdist = { url = "https://files.pythonhosted.org/packages/57/fd/0005efbd0af48e55eb3c7208af93f2862d4b1a56cd78e84309a2d959208d/numpy-2.4.2.tar.gz", hash = "sha256:659a6107e31a83c4e33f763942275fd278b21d095094044eb35569e86a21ddae", size = 20723651, upload-time = "2026-01-31T23:13:10.135Z" }
1345
1351
  wheels = [
@@ -12,7 +12,7 @@
12
12
  {
13
13
  "registryType": "pypi",
14
14
  "identifier": "clio-kit",
15
- "version": "2.4.9",
15
+ "version": "2.5.4",
16
16
  "transport": {
17
17
  "type": "stdio"
18
18
  },
@@ -1,6 +1,12 @@
1
1
  version = 1
2
2
  revision = 3
3
3
  requires-python = ">=3.10"
4
+ resolution-markers = [
5
+ "python_full_version >= '3.14' and sys_platform == 'win32'",
6
+ "python_full_version >= '3.14' and sys_platform != 'win32'",
7
+ "python_full_version < '3.14' and sys_platform == 'win32'",
8
+ "python_full_version < '3.14' and sys_platform != 'win32'",
9
+ ]
4
10
 
5
11
  [[package]]
6
12
  name = "aiofile"
@@ -1075,7 +1081,7 @@ wheels = [
1075
1081
 
1076
1082
  [[package]]
1077
1083
  name = "mcp"
1078
- version = "1.26.0"
1084
+ version = "1.28.1"
1079
1085
  source = { registry = "https://pypi.org/simple" }
1080
1086
  dependencies = [
1081
1087
  { name = "anyio" },
@@ -1093,9 +1099,9 @@ dependencies = [
1093
1099
  { name = "typing-inspection" },
1094
1100
  { name = "uvicorn", marker = "sys_platform != 'emscripten'" },
1095
1101
  ]
1096
- sdist = { url = "https://files.pythonhosted.org/packages/fc/6d/62e76bbb8144d6ed86e202b5edd8a4cb631e7c8130f3f4893c3f90262b10/mcp-1.26.0.tar.gz", hash = "sha256:db6e2ef491eecc1a0d93711a76f28dec2e05999f93afd48795da1c1137142c66", size = 608005, upload-time = "2026-01-24T19:40:32.468Z" }
1102
+ sdist = { url = "https://files.pythonhosted.org/packages/6e/77/9450b8f251a13affb6281997d0523c4615f8a8b35d0b21ff30db3a5aac9d/mcp-1.28.1.tar.gz", hash = "sha256:d51e36a5f5644faea4f85ea649bfffa6bc6c26770d42798ad6a3de3d2ba69683", size = 638501, upload-time = "2026-06-26T12:57:29.093Z" }
1097
1103
  wheels = [
1098
- { url = "https://files.pythonhosted.org/packages/fd/d9/eaa1f80170d2b7c5ba23f3b59f766f3a0bb41155fbc32a69adfa1adaaef9/mcp-1.26.0-py3-none-any.whl", hash = "sha256:904a21c33c25aa98ddbeb47273033c435e595bbacfdb177f4bd87f6dceebe1ca", size = 233615, upload-time = "2026-01-24T19:40:30.652Z" },
1104
+ { url = "https://files.pythonhosted.org/packages/e2/5e/d118fce19f87a2e7d8101c35c8ae0ec289098a4df0ff244cec23e415aca0/mcp-1.28.1-py3-none-any.whl", hash = "sha256:2726bca5e7193f61c5dde8b12500a6de2d9acf6d1a1c0be9e8c2e706437991df", size = 222620, upload-time = "2026-06-26T12:57:27.218Z" },
1099
1105
  ]
1100
1106
 
1101
1107
  [[package]]
@@ -12,7 +12,7 @@
12
12
  {
13
13
  "registryType": "pypi",
14
14
  "identifier": "clio-kit",
15
- "version": "2.4.9",
15
+ "version": "2.5.4",
16
16
  "transport": {
17
17
  "type": "stdio"
18
18
  },
@@ -2,7 +2,10 @@ version = 1
2
2
  revision = 3
3
3
  requires-python = ">=3.10"
4
4
  resolution-markers = [
5
- "python_full_version >= '3.11'",
5
+ "python_full_version >= '3.14' and sys_platform == 'win32'",
6
+ "python_full_version >= '3.14' and sys_platform != 'win32'",
7
+ "python_full_version >= '3.11' and python_full_version < '3.14' and sys_platform == 'win32'",
8
+ "python_full_version >= '3.11' and python_full_version < '3.14' and sys_platform != 'win32'",
6
9
  "python_full_version < '3.11'",
7
10
  ]
8
11
 
@@ -1171,7 +1174,7 @@ wheels = [
1171
1174
 
1172
1175
  [[package]]
1173
1176
  name = "mcp"
1174
- version = "1.26.0"
1177
+ version = "1.28.1"
1175
1178
  source = { registry = "https://pypi.org/simple" }
1176
1179
  dependencies = [
1177
1180
  { name = "anyio" },
@@ -1189,9 +1192,9 @@ dependencies = [
1189
1192
  { name = "typing-inspection" },
1190
1193
  { name = "uvicorn", marker = "sys_platform != 'emscripten'" },
1191
1194
  ]
1192
- sdist = { url = "https://files.pythonhosted.org/packages/fc/6d/62e76bbb8144d6ed86e202b5edd8a4cb631e7c8130f3f4893c3f90262b10/mcp-1.26.0.tar.gz", hash = "sha256:db6e2ef491eecc1a0d93711a76f28dec2e05999f93afd48795da1c1137142c66", size = 608005, upload-time = "2026-01-24T19:40:32.468Z" }
1195
+ sdist = { url = "https://files.pythonhosted.org/packages/6e/77/9450b8f251a13affb6281997d0523c4615f8a8b35d0b21ff30db3a5aac9d/mcp-1.28.1.tar.gz", hash = "sha256:d51e36a5f5644faea4f85ea649bfffa6bc6c26770d42798ad6a3de3d2ba69683", size = 638501, upload-time = "2026-06-26T12:57:29.093Z" }
1193
1196
  wheels = [
1194
- { url = "https://files.pythonhosted.org/packages/fd/d9/eaa1f80170d2b7c5ba23f3b59f766f3a0bb41155fbc32a69adfa1adaaef9/mcp-1.26.0-py3-none-any.whl", hash = "sha256:904a21c33c25aa98ddbeb47273033c435e595bbacfdb177f4bd87f6dceebe1ca", size = 233615, upload-time = "2026-01-24T19:40:30.652Z" },
1197
+ { url = "https://files.pythonhosted.org/packages/e2/5e/d118fce19f87a2e7d8101c35c8ae0ec289098a4df0ff244cec23e415aca0/mcp-1.28.1-py3-none-any.whl", hash = "sha256:2726bca5e7193f61c5dde8b12500a6de2d9acf6d1a1c0be9e8c2e706437991df", size = 222620, upload-time = "2026-06-26T12:57:27.218Z" },
1195
1198
  ]
1196
1199
 
1197
1200
  [[package]]
@@ -1420,7 +1423,10 @@ name = "numpy"
1420
1423
  version = "2.4.2"
1421
1424
  source = { registry = "https://pypi.org/simple" }
1422
1425
  resolution-markers = [
1423
- "python_full_version >= '3.11'",
1426
+ "python_full_version >= '3.14' and sys_platform == 'win32'",
1427
+ "python_full_version >= '3.14' and sys_platform != 'win32'",
1428
+ "python_full_version >= '3.11' and python_full_version < '3.14' and sys_platform == 'win32'",
1429
+ "python_full_version >= '3.11' and python_full_version < '3.14' and sys_platform != 'win32'",
1424
1430
  ]
1425
1431
  sdist = { url = "https://files.pythonhosted.org/packages/57/fd/0005efbd0af48e55eb3c7208af93f2862d4b1a56cd78e84309a2d959208d/numpy-2.4.2.tar.gz", hash = "sha256:659a6107e31a83c4e33f763942275fd278b21d095094044eb35569e86a21ddae", size = 20723651, upload-time = "2026-01-31T23:13:10.135Z" }
1426
1432
  wheels = [
@@ -12,7 +12,7 @@
12
12
  {
13
13
  "registryType": "pypi",
14
14
  "identifier": "clio-kit",
15
- "version": "2.4.9",
15
+ "version": "2.5.4",
16
16
  "transport": {
17
17
  "type": "stdio"
18
18
  },
@@ -1,6 +1,12 @@
1
1
  version = 1
2
2
  revision = 3
3
3
  requires-python = ">=3.10"
4
+ resolution-markers = [
5
+ "python_full_version >= '3.14' and sys_platform == 'win32'",
6
+ "python_full_version >= '3.14' and sys_platform != 'win32'",
7
+ "python_full_version < '3.14' and sys_platform == 'win32'",
8
+ "python_full_version < '3.14' and sys_platform != 'win32'",
9
+ ]
4
10
 
5
11
  [[package]]
6
12
  name = "aiofile"
@@ -1073,7 +1079,7 @@ wheels = [
1073
1079
 
1074
1080
  [[package]]
1075
1081
  name = "mcp"
1076
- version = "1.26.0"
1082
+ version = "1.28.1"
1077
1083
  source = { registry = "https://pypi.org/simple" }
1078
1084
  dependencies = [
1079
1085
  { name = "anyio" },
@@ -1091,9 +1097,9 @@ dependencies = [
1091
1097
  { name = "typing-inspection" },
1092
1098
  { name = "uvicorn", marker = "sys_platform != 'emscripten'" },
1093
1099
  ]
1094
- sdist = { url = "https://files.pythonhosted.org/packages/fc/6d/62e76bbb8144d6ed86e202b5edd8a4cb631e7c8130f3f4893c3f90262b10/mcp-1.26.0.tar.gz", hash = "sha256:db6e2ef491eecc1a0d93711a76f28dec2e05999f93afd48795da1c1137142c66", size = 608005, upload-time = "2026-01-24T19:40:32.468Z" }
1100
+ sdist = { url = "https://files.pythonhosted.org/packages/6e/77/9450b8f251a13affb6281997d0523c4615f8a8b35d0b21ff30db3a5aac9d/mcp-1.28.1.tar.gz", hash = "sha256:d51e36a5f5644faea4f85ea649bfffa6bc6c26770d42798ad6a3de3d2ba69683", size = 638501, upload-time = "2026-06-26T12:57:29.093Z" }
1095
1101
  wheels = [
1096
- { url = "https://files.pythonhosted.org/packages/fd/d9/eaa1f80170d2b7c5ba23f3b59f766f3a0bb41155fbc32a69adfa1adaaef9/mcp-1.26.0-py3-none-any.whl", hash = "sha256:904a21c33c25aa98ddbeb47273033c435e595bbacfdb177f4bd87f6dceebe1ca", size = 233615, upload-time = "2026-01-24T19:40:30.652Z" },
1102
+ { url = "https://files.pythonhosted.org/packages/e2/5e/d118fce19f87a2e7d8101c35c8ae0ec289098a4df0ff244cec23e415aca0/mcp-1.28.1-py3-none-any.whl", hash = "sha256:2726bca5e7193f61c5dde8b12500a6de2d9acf6d1a1c0be9e8c2e706437991df", size = 222620, upload-time = "2026-06-26T12:57:27.218Z" },
1097
1103
  ]
1098
1104
 
1099
1105
  [[package]]
@@ -12,7 +12,7 @@
12
12
  {
13
13
  "registryType": "pypi",
14
14
  "identifier": "clio-kit",
15
- "version": "2.4.9",
15
+ "version": "2.5.4",
16
16
  "transport": {
17
17
  "type": "stdio"
18
18
  },
@@ -1481,7 +1481,7 @@ wheels = [
1481
1481
 
1482
1482
  [[package]]
1483
1483
  name = "mcp"
1484
- version = "1.26.0"
1484
+ version = "1.28.1"
1485
1485
  source = { registry = "https://pypi.org/simple" }
1486
1486
  dependencies = [
1487
1487
  { name = "anyio" },
@@ -1499,9 +1499,9 @@ dependencies = [
1499
1499
  { name = "typing-inspection" },
1500
1500
  { name = "uvicorn", marker = "sys_platform != 'emscripten'" },
1501
1501
  ]
1502
- sdist = { url = "https://files.pythonhosted.org/packages/fc/6d/62e76bbb8144d6ed86e202b5edd8a4cb631e7c8130f3f4893c3f90262b10/mcp-1.26.0.tar.gz", hash = "sha256:db6e2ef491eecc1a0d93711a76f28dec2e05999f93afd48795da1c1137142c66", size = 608005, upload-time = "2026-01-24T19:40:32.468Z" }
1502
+ sdist = { url = "https://files.pythonhosted.org/packages/6e/77/9450b8f251a13affb6281997d0523c4615f8a8b35d0b21ff30db3a5aac9d/mcp-1.28.1.tar.gz", hash = "sha256:d51e36a5f5644faea4f85ea649bfffa6bc6c26770d42798ad6a3de3d2ba69683", size = 638501, upload-time = "2026-06-26T12:57:29.093Z" }
1503
1503
  wheels = [
1504
- { url = "https://files.pythonhosted.org/packages/fd/d9/eaa1f80170d2b7c5ba23f3b59f766f3a0bb41155fbc32a69adfa1adaaef9/mcp-1.26.0-py3-none-any.whl", hash = "sha256:904a21c33c25aa98ddbeb47273033c435e595bbacfdb177f4bd87f6dceebe1ca", size = 233615, upload-time = "2026-01-24T19:40:30.652Z" },
1504
+ { url = "https://files.pythonhosted.org/packages/e2/5e/d118fce19f87a2e7d8101c35c8ae0ec289098a4df0ff244cec23e415aca0/mcp-1.28.1-py3-none-any.whl", hash = "sha256:2726bca5e7193f61c5dde8b12500a6de2d9acf6d1a1c0be9e8c2e706437991df", size = 222620, upload-time = "2026-06-26T12:57:27.218Z" },
1505
1505
  ]
1506
1506
 
1507
1507
  [[package]]
@@ -12,7 +12,7 @@
12
12
  {
13
13
  "registryType": "pypi",
14
14
  "identifier": "clio-kit",
15
- "version": "2.4.9",
15
+ "version": "2.5.4",
16
16
  "transport": {
17
17
  "type": "stdio"
18
18
  },
@@ -1713,7 +1713,7 @@ wheels = [
1713
1713
 
1714
1714
  [[package]]
1715
1715
  name = "mcp"
1716
- version = "1.27.2"
1716
+ version = "1.28.1"
1717
1717
  source = { registry = "https://pypi.org/simple" }
1718
1718
  dependencies = [
1719
1719
  { name = "anyio" },
@@ -1731,9 +1731,9 @@ dependencies = [
1731
1731
  { name = "typing-inspection" },
1732
1732
  { name = "uvicorn", marker = "sys_platform != 'emscripten'" },
1733
1733
  ]
1734
- sdist = { url = "https://files.pythonhosted.org/packages/27/3c/347cf965d313f5d41764e7d46bea6ffe7d9ef13b983cc429b0340962a082/mcp-1.27.2.tar.gz", hash = "sha256:8e02db104096d1c25b28e64bde29a5c32b31bc241710213e12fd4d84985bdfef", size = 621116, upload-time = "2026-05-29T17:16:04.039Z" }
1734
+ sdist = { url = "https://files.pythonhosted.org/packages/6e/77/9450b8f251a13affb6281997d0523c4615f8a8b35d0b21ff30db3a5aac9d/mcp-1.28.1.tar.gz", hash = "sha256:d51e36a5f5644faea4f85ea649bfffa6bc6c26770d42798ad6a3de3d2ba69683", size = 638501, upload-time = "2026-06-26T12:57:29.093Z" }
1735
1735
  wheels = [
1736
- { url = "https://files.pythonhosted.org/packages/c9/11/252c6f971dc4f16af1d98a1c469d8ba523aab00d1bb76b4d3bc1ff32eacc/mcp-1.27.2-py3-none-any.whl", hash = "sha256:d6ff5160c6ca65d93013626efb3fc249de683c30b2d8570755ceddd490344de5", size = 220498, upload-time = "2026-05-29T17:16:02.442Z" },
1736
+ { url = "https://files.pythonhosted.org/packages/e2/5e/d118fce19f87a2e7d8101c35c8ae0ec289098a4df0ff244cec23e415aca0/mcp-1.28.1-py3-none-any.whl", hash = "sha256:2726bca5e7193f61c5dde8b12500a6de2d9acf6d1a1c0be9e8c2e706437991df", size = 222620, upload-time = "2026-06-26T12:57:27.218Z" },
1737
1737
  ]
1738
1738
 
1739
1739
  [[package]]
@@ -12,7 +12,7 @@
12
12
  {
13
13
  "registryType": "pypi",
14
14
  "identifier": "clio-kit",
15
- "version": "2.4.9",
15
+ "version": "2.5.4",
16
16
  "transport": {
17
17
  "type": "stdio"
18
18
  },
@@ -1,9 +1,12 @@
1
1
  version = 1
2
- revision = 2
2
+ revision = 3
3
3
  requires-python = ">=3.10"
4
4
  resolution-markers = [
5
5
  "python_full_version >= '3.15'",
6
- "python_full_version >= '3.11' and python_full_version < '3.15'",
6
+ "python_full_version == '3.14.*' and sys_platform == 'win32'",
7
+ "python_full_version == '3.14.*' and sys_platform != 'win32'",
8
+ "python_full_version >= '3.11' and python_full_version < '3.14' and sys_platform == 'win32'",
9
+ "python_full_version >= '3.11' and python_full_version < '3.14' and sys_platform != 'win32'",
7
10
  "python_full_version < '3.11'",
8
11
  ]
9
12
 
@@ -15,7 +18,7 @@ resolution-markers = [
15
18
  "python_full_version < '3.11'",
16
19
  ]
17
20
  dependencies = [
18
- { name = "caio", marker = "python_full_version < '3.11'" },
21
+ { name = "caio" },
19
22
  ]
20
23
  sdist = { url = "https://files.pythonhosted.org/packages/67/e2/d7cb819de8df6b5c1968a2756c3cb4122d4fa2b8fc768b53b7c9e5edb646/aiofile-3.9.0.tar.gz", hash = "sha256:e5ad718bb148b265b6df1b3752c4d1d83024b93da9bd599df74b9d9ffcf7919b", size = 17943, upload-time = "2024-10-08T10:39:35.846Z" }
21
24
  wheels = [
@@ -28,10 +31,13 @@ version = "3.11.1"
28
31
  source = { registry = "https://pypi.org/simple" }
29
32
  resolution-markers = [
30
33
  "python_full_version >= '3.15'",
31
- "python_full_version >= '3.11' and python_full_version < '3.15'",
34
+ "python_full_version == '3.14.*' and sys_platform == 'win32'",
35
+ "python_full_version == '3.14.*' and sys_platform != 'win32'",
36
+ "python_full_version >= '3.11' and python_full_version < '3.14' and sys_platform == 'win32'",
37
+ "python_full_version >= '3.11' and python_full_version < '3.14' and sys_platform != 'win32'",
32
38
  ]
33
39
  dependencies = [
34
- { name = "caio", marker = "python_full_version >= '3.11'" },
40
+ { name = "caio" },
35
41
  ]
36
42
  sdist = { url = "https://files.pythonhosted.org/packages/48/41/2fea7e193e061ce54eacc3b7bc0e6a99e4fcff43c78cf0a76dd781ed8334/aiofile-3.11.1.tar.gz", hash = "sha256:1f91912c6643d2a4e49ca4ae3514f0bf3867ce948a36d99a6411b8f4755f4cf9", size = 19342, upload-time = "2026-05-16T08:18:33.538Z" }
37
43
  wheels = [
@@ -874,7 +880,7 @@ name = "importlib-metadata"
874
880
  version = "9.0.0"
875
881
  source = { registry = "https://pypi.org/simple" }
876
882
  dependencies = [
877
- { name = "zipp", marker = "python_full_version < '3.15'" },
883
+ { name = "zipp" },
878
884
  ]
879
885
  sdist = { url = "https://files.pythonhosted.org/packages/a9/01/15bb152d77b21318514a96f43af312635eb2500c96b55398d020c93d86ea/importlib_metadata-9.0.0.tar.gz", hash = "sha256:a4f57ab599e6a2e3016d7595cfd72eb4661a5106e787a95bcc90c7105b831efc", size = 56405, upload-time = "2026-03-20T06:42:56.999Z" }
880
886
  wheels = [
@@ -1128,7 +1134,7 @@ wheels = [
1128
1134
 
1129
1135
  [[package]]
1130
1136
  name = "mcp"
1131
- version = "1.27.2"
1137
+ version = "1.28.1"
1132
1138
  source = { registry = "https://pypi.org/simple" }
1133
1139
  dependencies = [
1134
1140
  { name = "anyio" },
@@ -1146,9 +1152,9 @@ dependencies = [
1146
1152
  { name = "typing-inspection" },
1147
1153
  { name = "uvicorn", marker = "sys_platform != 'emscripten'" },
1148
1154
  ]
1149
- sdist = { url = "https://files.pythonhosted.org/packages/27/3c/347cf965d313f5d41764e7d46bea6ffe7d9ef13b983cc429b0340962a082/mcp-1.27.2.tar.gz", hash = "sha256:8e02db104096d1c25b28e64bde29a5c32b31bc241710213e12fd4d84985bdfef", size = 621116, upload-time = "2026-05-29T17:16:04.039Z" }
1155
+ sdist = { url = "https://files.pythonhosted.org/packages/6e/77/9450b8f251a13affb6281997d0523c4615f8a8b35d0b21ff30db3a5aac9d/mcp-1.28.1.tar.gz", hash = "sha256:d51e36a5f5644faea4f85ea649bfffa6bc6c26770d42798ad6a3de3d2ba69683", size = 638501, upload-time = "2026-06-26T12:57:29.093Z" }
1150
1156
  wheels = [
1151
- { url = "https://files.pythonhosted.org/packages/c9/11/252c6f971dc4f16af1d98a1c469d8ba523aab00d1bb76b4d3bc1ff32eacc/mcp-1.27.2-py3-none-any.whl", hash = "sha256:d6ff5160c6ca65d93013626efb3fc249de683c30b2d8570755ceddd490344de5", size = 220498, upload-time = "2026-05-29T17:16:02.442Z" },
1157
+ { url = "https://files.pythonhosted.org/packages/e2/5e/d118fce19f87a2e7d8101c35c8ae0ec289098a4df0ff244cec23e415aca0/mcp-1.28.1-py3-none-any.whl", hash = "sha256:2726bca5e7193f61c5dde8b12500a6de2d9acf6d1a1c0be9e8c2e706437991df", size = 222620, upload-time = "2026-06-26T12:57:27.218Z" },
1152
1158
  ]
1153
1159
 
1154
1160
  [[package]]
@@ -2033,7 +2039,10 @@ version = "2026.5.1"
2033
2039
  source = { registry = "https://pypi.org/simple" }
2034
2040
  resolution-markers = [
2035
2041
  "python_full_version >= '3.15'",
2036
- "python_full_version >= '3.11' and python_full_version < '3.15'",
2042
+ "python_full_version == '3.14.*' and sys_platform == 'win32'",
2043
+ "python_full_version == '3.14.*' and sys_platform != 'win32'",
2044
+ "python_full_version >= '3.11' and python_full_version < '3.14' and sys_platform == 'win32'",
2045
+ "python_full_version >= '3.11' and python_full_version < '3.14' and sys_platform != 'win32'",
2037
2046
  ]
2038
2047
  sdist = { url = "https://files.pythonhosted.org/packages/2e/43/25a8dcd3feedd735039a8f0b5b7e3b118232b5eae288c4fd9ab200d41094/rpds_py-2026.5.1.tar.gz", hash = "sha256:07b24fea40541e28570e5b795a4a38fbdcd12550c06bd0748005ecc8116ca256", size = 64459, upload-time = "2026-05-28T12:02:13.232Z" }
2039
2048
  wheels = [
@@ -12,7 +12,7 @@
12
12
  {
13
13
  "registryType": "pypi",
14
14
  "identifier": "clio-kit",
15
- "version": "2.4.9",
15
+ "version": "2.5.4",
16
16
  "transport": {
17
17
  "type": "stdio"
18
18
  },
@@ -2,7 +2,10 @@ version = 1
2
2
  revision = 3
3
3
  requires-python = ">=3.10"
4
4
  resolution-markers = [
5
- "python_full_version >= '3.11'",
5
+ "python_full_version >= '3.14' and sys_platform == 'win32'",
6
+ "python_full_version >= '3.14' and sys_platform != 'win32'",
7
+ "python_full_version >= '3.11' and python_full_version < '3.14' and sys_platform == 'win32'",
8
+ "python_full_version >= '3.11' and python_full_version < '3.14' and sys_platform != 'win32'",
6
9
  "python_full_version < '3.11'",
7
10
  ]
8
11
 
@@ -1137,7 +1140,7 @@ wheels = [
1137
1140
 
1138
1141
  [[package]]
1139
1142
  name = "mcp"
1140
- version = "1.26.0"
1143
+ version = "1.28.1"
1141
1144
  source = { registry = "https://pypi.org/simple" }
1142
1145
  dependencies = [
1143
1146
  { name = "anyio" },
@@ -1155,9 +1158,9 @@ dependencies = [
1155
1158
  { name = "typing-inspection" },
1156
1159
  { name = "uvicorn", marker = "sys_platform != 'emscripten'" },
1157
1160
  ]
1158
- sdist = { url = "https://files.pythonhosted.org/packages/fc/6d/62e76bbb8144d6ed86e202b5edd8a4cb631e7c8130f3f4893c3f90262b10/mcp-1.26.0.tar.gz", hash = "sha256:db6e2ef491eecc1a0d93711a76f28dec2e05999f93afd48795da1c1137142c66", size = 608005, upload-time = "2026-01-24T19:40:32.468Z" }
1161
+ sdist = { url = "https://files.pythonhosted.org/packages/6e/77/9450b8f251a13affb6281997d0523c4615f8a8b35d0b21ff30db3a5aac9d/mcp-1.28.1.tar.gz", hash = "sha256:d51e36a5f5644faea4f85ea649bfffa6bc6c26770d42798ad6a3de3d2ba69683", size = 638501, upload-time = "2026-06-26T12:57:29.093Z" }
1159
1162
  wheels = [
1160
- { url = "https://files.pythonhosted.org/packages/fd/d9/eaa1f80170d2b7c5ba23f3b59f766f3a0bb41155fbc32a69adfa1adaaef9/mcp-1.26.0-py3-none-any.whl", hash = "sha256:904a21c33c25aa98ddbeb47273033c435e595bbacfdb177f4bd87f6dceebe1ca", size = 233615, upload-time = "2026-01-24T19:40:30.652Z" },
1163
+ { url = "https://files.pythonhosted.org/packages/e2/5e/d118fce19f87a2e7d8101c35c8ae0ec289098a4df0ff244cec23e415aca0/mcp-1.28.1-py3-none-any.whl", hash = "sha256:2726bca5e7193f61c5dde8b12500a6de2d9acf6d1a1c0be9e8c2e706437991df", size = 222620, upload-time = "2026-06-26T12:57:27.218Z" },
1161
1164
  ]
1162
1165
 
1163
1166
  [[package]]
@@ -1376,7 +1379,10 @@ name = "numpy"
1376
1379
  version = "2.4.2"
1377
1380
  source = { registry = "https://pypi.org/simple" }
1378
1381
  resolution-markers = [
1379
- "python_full_version >= '3.11'",
1382
+ "python_full_version >= '3.14' and sys_platform == 'win32'",
1383
+ "python_full_version >= '3.14' and sys_platform != 'win32'",
1384
+ "python_full_version >= '3.11' and python_full_version < '3.14' and sys_platform == 'win32'",
1385
+ "python_full_version >= '3.11' and python_full_version < '3.14' and sys_platform != 'win32'",
1380
1386
  ]
1381
1387
  sdist = { url = "https://files.pythonhosted.org/packages/57/fd/0005efbd0af48e55eb3c7208af93f2862d4b1a56cd78e84309a2d959208d/numpy-2.4.2.tar.gz", hash = "sha256:659a6107e31a83c4e33f763942275fd278b21d095094044eb35569e86a21ddae", size = 20723651, upload-time = "2026-01-31T23:13:10.135Z" }
1382
1388
  wheels = [
@@ -1,5 +1,5 @@
1
1
  {
2
2
  "name": "clio-jarvis",
3
3
  "description": "JARVIS-CD MCP with a compact user pipeline contract and explicit admin compatibility profiles",
4
- "version": "3.1.1"
4
+ "version": "3.2.2"
5
5
  }
@@ -1,6 +1,6 @@
1
1
  [project]
2
2
  name = "jarvis-mcp"
3
- version = "3.1.1"
3
+ version = "3.2.2"
4
4
  description = "JARVIS-CD MCP with a compact user pipeline contract and explicit admin compatibility profiles"
5
5
  readme = "README.md"
6
6
  requires-python = ">=3.11"
@@ -15,7 +15,7 @@ dependencies = [
15
15
  "fastmcp>=3.2.0",
16
16
  "fastapi",
17
17
  "python-dotenv>=1.2.2",
18
- "jarvis-cd @ https://github.com/grc-iit/jarvis-cd/releases/download/v1.3.6/jarvis_cd-1.3.6-py3-none-any.whl#sha256=b963539a096a60d844ac5c43418361d88375566c14c06c8541102dd17ed6a1c9",
18
+ "jarvis-cd @ https://github.com/grc-iit/jarvis-cd/releases/download/v1.3.12/jarvis_cd-1.3.12-py3-none-any.whl#sha256=67541dde02e13842ab7a1581717a3577869f3d6ff7db4faf0238fd8c6319d3e3",
19
19
  "starlette>=1.3.1",
20
20
  "authlib>=1.6.12",
21
21
  "cryptography>=48.0.1",
@@ -18,13 +18,13 @@ from urllib.parse import urlsplit
18
18
 
19
19
 
20
20
  Json = dict[str, Any]
21
- EXPECTED_JARVIS_VERSION = "1.3.6"
21
+ EXPECTED_JARVIS_VERSION = "1.3.12"
22
22
  EXPECTED_JARVIS_URL = (
23
- "https://github.com/grc-iit/jarvis-cd/releases/download/v1.3.6/"
24
- "jarvis_cd-1.3.6-py3-none-any.whl"
23
+ "https://github.com/grc-iit/jarvis-cd/releases/download/v1.3.12/"
24
+ "jarvis_cd-1.3.12-py3-none-any.whl"
25
25
  )
26
26
  EXPECTED_JARVIS_SHA256 = (
27
- "b963539a096a60d844ac5c43418361d88375566c14c06c8541102dd17ed6a1c9"
27
+ "67541dde02e13842ab7a1581717a3577869f3d6ff7db4faf0238fd8c6319d3e3"
28
28
  )
29
29
 
30
30
 
@@ -3,7 +3,7 @@
3
3
  "name": "io.github.iowarp/jarvis-mcp",
4
4
  "title": "CLIO Jarvis",
5
5
  "description": "JARVIS-CD MCP with a compact user pipeline contract and explicit admin compatibility profiles",
6
- "version": "3.1.1",
6
+ "version": "3.2.2",
7
7
  "repository": {
8
8
  "url": "https://github.com/iowarp/clio-kit",
9
9
  "source": "github"
@@ -12,7 +12,7 @@
12
12
  {
13
13
  "registryType": "pypi",
14
14
  "identifier": "clio-kit",
15
- "version": "2.4.9",
15
+ "version": "2.5.4",
16
16
  "transport": {
17
17
  "type": "stdio"
18
18
  },
@@ -35,7 +35,7 @@
35
35
  },
36
36
  {
37
37
  "name": "jarvis_describe",
38
- "description": "Describe JARVIS packages, one package, a pipeline, or one pipeline step."
38
+ "description": "Describe JARVIS packages, one package, a pipeline, or one pipeline step. For a named application, first use target='package' with its unique short name or fully qualified package name. Use target='package_search' for bounded discovery, then describe the selected canonical name. target='packages' is an exhaustive legacy inventory with every package's settings and can be large; use it only when the complete installed catalog is explicitly required."
39
39
  },
40
40
  {
41
41
  "name": "jarvis_add_step",
@@ -3,12 +3,12 @@ Jarvis MCP Server
3
3
 
4
4
  Jarvis-CD MCP - Pipeline Management for High-Performance Computing with comprehensive workflow operations
5
5
 
6
- Version: 3.1.0
6
+ Version: 3.2.2
7
7
  Author: IoWarp Team - Gnosis Research Center
8
8
  License: BSD-3-Clause
9
9
  """
10
10
 
11
- __version__ = "3.1.0"
11
+ __version__ = "3.2.2"
12
12
  __author__ = "IoWarp Team - Gnosis Research Center"
13
13
  __email__ = "grc@illinoistech.edu"
14
14
  __license__ = "BSD-3-Clause"
@@ -2739,6 +2739,12 @@ def _runtime_metadata_from_documents(
2739
2739
  scheduler_provider = cast(str | None, handle_document["scheduler_provider"])
2740
2740
  scheduler_native_id = cast(str | None, handle_document["scheduler_native_id"])
2741
2741
  cluster = cast(str | None, handle_document["cluster"])
2742
+ scheduler_owned = (
2743
+ handle_document["mode"] == "scheduler"
2744
+ and scheduler_provider is not None
2745
+ and scheduler_native_id is not None
2746
+ and record_document["submitted"] is True
2747
+ )
2742
2748
  return {
2743
2749
  "schema_version": RUNTIME_METADATA_SCHEMA,
2744
2750
  "source": "jarvis_mcp",
@@ -2752,7 +2758,7 @@ def _runtime_metadata_from_documents(
2752
2758
  # above remain authoritative and are never recovered from stdout.
2753
2759
  "scheduler_type": scheduler_provider,
2754
2760
  "scheduler_job_id": scheduler_native_id,
2755
- "scheduler_phase": record_document["state"],
2761
+ "scheduler_phase": record_document["state"] if scheduler_owned else None,
2756
2762
  "script_path": script_path,
2757
2763
  "hostfile_path": (
2758
2764
  _native_optional_text(