clio-kit 2.4.2__tar.gz → 2.4.7__tar.gz

{clio_kit-2.4.2 → clio_kit-2.4.7}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: clio-kit
-Version: 2.4.2
+Version: 2.4.7
 Summary: CLIO Kit - MCP Servers, Clients, and Tools for AI Agents
 Project-URL: Homepage, https://github.com/iowarp/clio-kit
 Project-URL: Repository, https://github.com/iowarp/clio-kit
@@ -108,7 +108,7 @@ CLIO Kit is part of the IoWarp platform's comprehensive tooling ecosystem for AI
 
 ```bash
 # Install the released CLI into its own persistent tool environment
-uv tool install 'clio-kit==2.4.2'
+uv tool install 'clio-kit==2.4.3'
 # If uv reports that its executable directory is not on PATH:
 uv tool update-shell
 
@@ -130,7 +130,7 @@ clio-kit prompt code-coverage-prompt # Use a prompt
 ```
 
 `uv tool install` keeps CLIO Kit in a persistent, isolated tool environment.
-Use `uvx --from 'clio-kit==2.4.2' clio-kit ...` only for a temporary, one-shot
+Use `uvx --from 'clio-kit==2.4.3' clio-kit ...` only for a temporary, one-shot
 invocation.
 
 Released `clio-kit` wheels execute each embedded MCP server from that server's
@@ -273,7 +273,7 @@ Agents should discover first, install only when needed, then pass the exact
 | **`geo`** | 2.2.3 | Geospatial | Render GeoJSON vector layers with basemaps | `clio-kit mcp-server geo` |
 | **`geojson`** | 2.2.3 | Geospatial | Inspect, validate, and summarize GeoJSON | `clio-kit mcp-server geojson` |
 | **`hdf5`** | 2.2.3 | Data I/O | HPC-optimized scientific data with 27 tools, AI insights, caching, streaming | `clio-kit mcp-server hdf5` |
-| **`jarvis`** | 3.1.0 | Workflow | Durable pipeline, progress, artifact, and service-runtime management | `clio-kit mcp-server jarvis` |
+| **`jarvis`** | 3.1.1 | Workflow | Durable pipeline, progress, artifact, and service-runtime management | `clio-kit mcp-server jarvis` |
 | **`lmod`** | 2.2.3 | Environment | Environment module management | `clio-kit mcp-server lmod` |
 | **`ndp`** | 2.2.3 | Data Protocol | Search and discover datasets across CKAN instances | `clio-kit mcp-server ndp` |
 | **`node-hardware`** | 2.2.3 | System | System hardware information | `clio-kit mcp-server node-hardware` |
@@ -414,7 +414,7 @@ pip install uv
 Then install CLIO Kit persistently and expose uv's tool directory:
 
 ```bash
-uv tool install 'clio-kit==2.4.2'
+uv tool install 'clio-kit==2.4.3'
 uv tool update-shell
 ```
 

{clio_kit-2.4.2 → clio_kit-2.4.7}/README.md

@@ -82,7 +82,7 @@ CLIO Kit is part of the IoWarp platform's comprehensive tooling ecosystem for AI
 
 ```bash
 # Install the released CLI into its own persistent tool environment
-uv tool install 'clio-kit==2.4.2'
+uv tool install 'clio-kit==2.4.3'
 # If uv reports that its executable directory is not on PATH:
 uv tool update-shell
 
@@ -104,7 +104,7 @@ clio-kit prompt code-coverage-prompt # Use a prompt
 ```
 
 `uv tool install` keeps CLIO Kit in a persistent, isolated tool environment.
-Use `uvx --from 'clio-kit==2.4.2' clio-kit ...` only for a temporary, one-shot
+Use `uvx --from 'clio-kit==2.4.3' clio-kit ...` only for a temporary, one-shot
 invocation.
 
 Released `clio-kit` wheels execute each embedded MCP server from that server's
@@ -247,7 +247,7 @@ Agents should discover first, install only when needed, then pass the exact
 | **`geo`** | 2.2.3 | Geospatial | Render GeoJSON vector layers with basemaps | `clio-kit mcp-server geo` |
 | **`geojson`** | 2.2.3 | Geospatial | Inspect, validate, and summarize GeoJSON | `clio-kit mcp-server geojson` |
 | **`hdf5`** | 2.2.3 | Data I/O | HPC-optimized scientific data with 27 tools, AI insights, caching, streaming | `clio-kit mcp-server hdf5` |
-| **`jarvis`** | 3.1.0 | Workflow | Durable pipeline, progress, artifact, and service-runtime management | `clio-kit mcp-server jarvis` |
+| **`jarvis`** | 3.1.1 | Workflow | Durable pipeline, progress, artifact, and service-runtime management | `clio-kit mcp-server jarvis` |
 | **`lmod`** | 2.2.3 | Environment | Environment module management | `clio-kit mcp-server lmod` |
 | **`ndp`** | 2.2.3 | Data Protocol | Search and discover datasets across CKAN instances | `clio-kit mcp-server ndp` |
 | **`node-hardware`** | 2.2.3 | System | System hardware information | `clio-kit mcp-server node-hardware` |
@@ -388,7 +388,7 @@ pip install uv
 Then install CLIO Kit persistently and expose uv's tool directory:
 
 ```bash
-uv tool install 'clio-kit==2.4.2'
+uv tool install 'clio-kit==2.4.3'
 uv tool update-shell
 ```
 

{clio_kit-2.4.2 → clio_kit-2.4.7}/clio-kit-mcp-servers/adios/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.4.2",
+      "version": "2.4.7",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.4.2 → clio_kit-2.4.7}/clio-kit-mcp-servers/arxiv/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.4.2",
+      "version": "2.4.7",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.4.2 → clio_kit-2.4.7}/clio-kit-mcp-servers/chronolog/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.4.2",
+      "version": "2.4.7",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.4.2 → clio_kit-2.4.7}/clio-kit-mcp-servers/compression/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.4.2",
+      "version": "2.4.7",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.4.2 → clio_kit-2.4.7}/clio-kit-mcp-servers/darshan/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.4.2",
+      "version": "2.4.7",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.4.2 → clio_kit-2.4.7}/clio-kit-mcp-servers/geo/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.4.2",
+      "version": "2.4.7",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.4.2 → clio_kit-2.4.7}/clio-kit-mcp-servers/geojson/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.4.2",
+      "version": "2.4.7",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.4.2 → clio_kit-2.4.7}/clio-kit-mcp-servers/hdf5/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.4.2",
+      "version": "2.4.7",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.4.2 → clio_kit-2.4.7}/clio-kit-mcp-servers/jarvis/.claude-plugin/plugin.json

@@ -1,5 +1,5 @@
 {
   "name": "clio-jarvis",
   "description": "JARVIS-CD MCP with a compact user pipeline contract and explicit admin compatibility profiles",
-  "version": "3.1.0"
+  "version": "3.1.1"
 }

{clio_kit-2.4.2 → clio_kit-2.4.7}/clio-kit-mcp-servers/jarvis/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "jarvis-mcp"
-version = "3.1.0"
+version = "3.1.1"
 description = "JARVIS-CD MCP with a compact user pipeline contract and explicit admin compatibility profiles"
 readme = "README.md"
 requires-python = ">=3.11"
@@ -15,7 +15,7 @@ dependencies = [
   "fastmcp>=3.2.0",
   "fastapi",
   "python-dotenv>=1.2.2",
-  "jarvis-cd @ https://github.com/grc-iit/jarvis-cd/releases/download/v1.3.1/jarvis_cd-1.3.1-py3-none-any.whl#sha256=08411d49f8d457ec8a1a73ad9eacc71416a17919733682acee7e28e0011d8cea",
+  "jarvis-cd @ https://github.com/grc-iit/jarvis-cd/releases/download/v1.3.4/jarvis_cd-1.3.4-py3-none-any.whl#sha256=960debefd73b7789a141b5d02e89776fa10317144c357d791e0b843d730e4275",
   "starlette>=1.3.1",
   "authlib>=1.6.12",
   "cryptography>=48.0.1",

{clio_kit-2.4.2 → clio_kit-2.4.7}/clio-kit-mcp-servers/jarvis/scripts/live_ares_semantic_mcp_probe.py

@@ -18,13 +18,13 @@ from urllib.parse import urlsplit
 
 
 Json = dict[str, Any]
-EXPECTED_JARVIS_VERSION = "1.3.1"
+EXPECTED_JARVIS_VERSION = "1.3.4"
 EXPECTED_JARVIS_URL = (
-    "https://github.com/grc-iit/jarvis-cd/releases/download/v1.3.1/"
-    "jarvis_cd-1.3.1-py3-none-any.whl"
+    "https://github.com/grc-iit/jarvis-cd/releases/download/v1.3.4/"
+    "jarvis_cd-1.3.4-py3-none-any.whl"
 )
 EXPECTED_JARVIS_SHA256 = (
-    "08411d49f8d457ec8a1a73ad9eacc71416a17919733682acee7e28e0011d8cea"
+    "960debefd73b7789a141b5d02e89776fa10317144c357d791e0b843d730e4275"
 )
 
 

{clio_kit-2.4.2 → clio_kit-2.4.7}/clio-kit-mcp-servers/jarvis/server.json

@@ -3,7 +3,7 @@
   "name": "io.github.iowarp/jarvis-mcp",
   "title": "CLIO Jarvis",
   "description": "JARVIS-CD MCP with a compact user pipeline contract and explicit admin compatibility profiles",
-  "version": "3.1.0",
+  "version": "3.1.1",
   "repository": {
     "url": "https://github.com/iowarp/clio-kit",
     "source": "github"
@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.4.2",
+      "version": "2.4.7",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.4.2 → clio_kit-2.4.7}/clio-kit-mcp-servers/jarvis/src/jarvis_mcp/capabilities/jarvis_handler.py

@@ -695,6 +695,7 @@ async def run_pipeline(
                 raise ValueError(
                     "scheduler mode requires a configured pipeline scheduler"
                 )
+        assert pipeline is not None
         resolved_pipeline_id = _pipeline_id(pipeline) or pipeline_id
         if normalized == "scheduler" or (normalized == "auto" and has_scheduler):
             _require_execution_parameters(
@@ -1614,12 +1615,15 @@ def _open_spack_path_descriptor(path: Path, *, nonblocking: bool = False) -> int
         open_osfhandle = getattr(msvcrt, "open_osfhandle", None)
         if not callable(open_osfhandle):
             raise RuntimeError("Windows descriptor conversion APIs are unavailable")
-        return int(
-            open_osfhandle(
-                int(handle),
-                os.O_RDONLY | getattr(os, "O_BINARY", 0),
-            )
+        descriptor = open_osfhandle(
+            int(cast(Any, handle)),
+            os.O_RDONLY | getattr(os, "O_BINARY", 0),
         )
+        if not isinstance(descriptor, int):
+            raise RuntimeError(
+                "Windows descriptor conversion returned an invalid value"
+            )
+        return descriptor
     except BaseException:
         kernel32.CloseHandle(handle)
         raise
@@ -3224,7 +3228,7 @@ def _normalize_package_config_request(
             + ", ".join(null_names)
         )
 
-    parser = get_argparse()
+    parser = cast(Any, get_argparse())
     try:
         parser.parse(["configure", *_kwargs_to_config_args(kwargs)])
     except SystemExit as exc:
@@ -3268,9 +3272,23 @@ def _kwargs_to_config_args(kwargs: dict[str, Any]) -> list[str]:
         if value is None:
             continue
         if isinstance(value, bool):
-            args.append(f"{key}={str(value).lower()}")
+            rendered = str(value).lower()
+        elif isinstance(value, (dict, list)):
+            try:
+                rendered = json.dumps(
+                    value,
+                    allow_nan=False,
+                    ensure_ascii=False,
+                    separators=(",", ":"),
+                    sort_keys=True,
+                )
+            except (TypeError, ValueError) as exc:
+                raise ValueError(
+                    f"Package setting '{key}' must contain JSON-compatible values"
+                ) from exc
         else:
-            args.append(f"{key}={value}")
+            rendered = str(value)
+        args.append(f"{key}={rendered}")
     return args
 
 

{clio_kit-2.4.2 → clio_kit-2.4.7}/clio-kit-mcp-servers/jarvis/uv.lock

@@ -791,8 +791,8 @@ wheels = [
 
 [[package]]
 name = "jarvis-cd"
-version = "1.3.1"
-source = { url = "https://github.com/grc-iit/jarvis-cd/releases/download/v1.3.1/jarvis_cd-1.3.1-py3-none-any.whl" }
+version = "1.3.4"
+source = { url = "https://github.com/grc-iit/jarvis-cd/releases/download/v1.3.4/jarvis_cd-1.3.4-py3-none-any.whl" }
 dependencies = [
     { name = "pandas" },
     { name = "podman-compose" },
@@ -800,7 +800,7 @@ dependencies = [
     { name = "pyyaml" },
 ]
 wheels = [
-    { url = "https://github.com/grc-iit/jarvis-cd/releases/download/v1.3.1/jarvis_cd-1.3.1-py3-none-any.whl", hash = "sha256:08411d49f8d457ec8a1a73ad9eacc71416a17919733682acee7e28e0011d8cea" },
+    { url = "https://github.com/grc-iit/jarvis-cd/releases/download/v1.3.4/jarvis_cd-1.3.4-py3-none-any.whl", hash = "sha256:960debefd73b7789a141b5d02e89776fa10317144c357d791e0b843d730e4275" },
 ]
 
 [package.metadata]
@@ -813,7 +813,7 @@ requires-dist = [
 
 [[package]]
 name = "jarvis-mcp"
-version = "3.1.0"
+version = "3.1.1"
 source = { editable = "." }
 dependencies = [
     { name = "authlib" },
@@ -853,7 +853,7 @@ requires-dist = [
     { name = "fastapi" },
     { name = "fastmcp", specifier = ">=3.2.0" },
     { name = "idna", specifier = ">=3.15" },
-    { name = "jarvis-cd", url = "https://github.com/grc-iit/jarvis-cd/releases/download/v1.3.1/jarvis_cd-1.3.1-py3-none-any.whl" },
+    { name = "jarvis-cd", url = "https://github.com/grc-iit/jarvis-cd/releases/download/v1.3.4/jarvis_cd-1.3.4-py3-none-any.whl" },
     { name = "pydantic", specifier = ">=2.12.5" },
     { name = "pydantic-settings", specifier = ">=2.14.2" },
     { name = "pygments", specifier = ">=2.20.0" },

{clio_kit-2.4.2 → clio_kit-2.4.7}/clio-kit-mcp-servers/lmod/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.4.2",
+      "version": "2.4.7",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.4.2 → clio_kit-2.4.7}/clio-kit-mcp-servers/ndp/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.4.2",
+      "version": "2.4.7",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.4.2 → clio_kit-2.4.7}/clio-kit-mcp-servers/node-hardware/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.4.2",
+      "version": "2.4.7",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.4.2 → clio_kit-2.4.7}/clio-kit-mcp-servers/pandas/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.4.2",
+      "version": "2.4.7",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.4.2 → clio_kit-2.4.7}/clio-kit-mcp-servers/parallel-sort/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.4.2",
+      "version": "2.4.7",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.4.2 → clio_kit-2.4.7}/clio-kit-mcp-servers/paraview/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.4.2",
+      "version": "2.4.7",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.4.2 → clio_kit-2.4.7}/clio-kit-mcp-servers/parquet/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.4.2",
+      "version": "2.4.7",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.4.2 → clio_kit-2.4.7}/clio-kit-mcp-servers/plot/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.4.2",
+      "version": "2.4.7",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.4.2 → clio_kit-2.4.7}/clio-kit-mcp-servers/sac/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.4.2",
+      "version": "2.4.7",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.4.2 → clio_kit-2.4.7}/clio-kit-mcp-servers/scientific-catalog/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.4.2",
+      "version": "2.4.7",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.4.2 → clio_kit-2.4.7}/clio-kit-mcp-servers/seismic/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.4.2",
+      "version": "2.4.7",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.4.2 → clio_kit-2.4.7}/clio-kit-mcp-servers/slurm/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.4.2",
+      "version": "2.4.7",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.4.2 → clio_kit-2.4.7}/clio-kit-mcp-servers/spack/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.4.2",
+      "version": "2.4.7",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.4.2 → clio_kit-2.4.7}/clio-kit-mcp-servers/terrain/server.json

@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.4.2",
+      "version": "2.4.7",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.4.2 → clio_kit-2.4.7}/mcp-server-versions.toml

@@ -4,7 +4,7 @@ schema-version = 1
 # Existing Registry versions are immutable and must not be republished merely
 # because a newer clio-kit wheel also contains their unchanged implementation.
 [mcp-registry-release]
-publish = ["scientific-catalog"]
+publish = ["jarvis"]
 
 # Generated website metadata must not depend on the wall clock. Advance this
 # date intentionally whenever current contract metadata is regenerated.
@@ -23,7 +23,7 @@ darshan = "2.2.3"
 geo = "2.2.3"
 geojson = "2.2.3"
 hdf5 = "2.2.3"
-jarvis = "3.1.0"
+jarvis = "3.1.1"
 lmod = "2.2.3"
 ndp = "2.2.3"
 node-hardware = "2.2.3"

{clio_kit-2.4.2 → clio_kit-2.4.7}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
 
 [project]
 name = "clio-kit"
-version = "2.4.2"
+version = "2.4.7"
 description = "CLIO Kit - MCP Servers, Clients, and Tools for AI Agents"
 readme = "README.md"
 requires-python = ">=3.10"