clio-kit 2.2.1__tar.gz → 2.2.3__tar.gz

{clio_kit-2.2.1 → clio_kit-2.2.3}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: clio-kit
-Version: 2.2.1
+Version: 2.2.3
 Summary: CLIO Kit - MCP Servers, Clients, and Tools for AI Agents
 Project-URL: Homepage, https://github.com/iowarp/clio-kit
 Project-URL: Repository, https://github.com/iowarp/clio-kit

{clio_kit-2.2.1 → clio_kit-2.2.3}/clio-kit-mcp-servers/adios/server.json

@@ -3,7 +3,7 @@
   "name": "io.github.iowarp/adios-mcp",
   "title": "CLIO Adios",
   "description": "Fetch and analyze BP5 data files using ADIOS2. Access scientific data, metadata, and attributes...",
-  "version": "2.2.1",
+  "version": "2.2.3",
   "repository": {
     "url": "https://github.com/iowarp/clio-kit",
     "source": "github"
@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.2.1",
+      "version": "2.2.3",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.2.1 → clio_kit-2.2.3}/clio-kit-mcp-servers/arxiv/server.json

@@ -3,7 +3,7 @@
   "name": "io.github.iowarp/arxiv-mcp",
   "title": "CLIO Arxiv",
   "description": "ArXiv MCP server implementation using Model Context Protocol",
-  "version": "2.2.1",
+  "version": "2.2.3",
   "repository": {
     "url": "https://github.com/iowarp/clio-kit",
     "source": "github"
@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.2.1",
+      "version": "2.2.3",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.2.1 → clio_kit-2.2.3}/clio-kit-mcp-servers/compression/server.json

@@ -3,7 +3,7 @@
   "name": "io.github.iowarp/compression-mcp",
   "title": "CLIO Compression",
   "description": "Compression MCP server implementation using Model Context Protocol",
-  "version": "2.2.1",
+  "version": "2.2.3",
   "repository": {
     "url": "https://github.com/iowarp/clio-kit",
     "source": "github"
@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.2.1",
+      "version": "2.2.3",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.2.1 → clio_kit-2.2.3}/clio-kit-mcp-servers/darshan/server.json

@@ -3,7 +3,7 @@
   "name": "io.github.iowarp/darshan-mcp",
   "title": "CLIO Darshan",
   "description": "Darshan I/O profiler MCP server for analyzing I/O trace files",
-  "version": "2.2.1",
+  "version": "2.2.3",
   "repository": {
     "url": "https://github.com/iowarp/clio-kit",
     "source": "github"
@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.2.1",
+      "version": "2.2.3",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.2.1 → clio_kit-2.2.3}/clio-kit-mcp-servers/geo/server.json

@@ -3,7 +3,7 @@
   "name": "io.github.iowarp/geo-mcp",
   "title": "CLIO Geo",
   "description": "MCP server for rendering GeoJSON vector layers into map images with basemaps",
-  "version": "2.2.1",
+  "version": "2.2.3",
   "repository": {
     "url": "https://github.com/iowarp/clio-kit",
     "source": "github"
@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.2.1",
+      "version": "2.2.3",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.2.1 → clio_kit-2.2.3}/clio-kit-mcp-servers/geojson/server.json

@@ -3,7 +3,7 @@
   "name": "io.github.iowarp/geojson-mcp",
   "title": "CLIO Geojson",
   "description": "MCP server for inspecting, validating, and summarizing GeoJSON documents (stdlib only)",
-  "version": "2.2.1",
+  "version": "2.2.3",
   "repository": {
     "url": "https://github.com/iowarp/clio-kit",
     "source": "github"
@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.2.1",
+      "version": "2.2.3",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.2.1 → clio_kit-2.2.3}/clio-kit-mcp-servers/hdf5/server.json

@@ -3,7 +3,7 @@
   "name": "io.github.iowarp/hdf5-mcp",
   "title": "CLIO Hdf5",
   "description": "HDF5 FastMCP - Scientific Data Access for AI Agents | CLIO Kit MCP Server",
-  "version": "2.2.1",
+  "version": "2.2.3",
   "repository": {
     "url": "https://github.com/iowarp/clio-kit",
     "source": "github"
@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.2.1",
+      "version": "2.2.3",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.2.1 → clio_kit-2.2.3}/clio-kit-mcp-servers/jarvis/server.json

@@ -3,7 +3,7 @@
   "name": "io.github.iowarp/jarvis-mcp",
   "title": "CLIO Jarvis",
   "description": "Jarvis-CD MCP - Pipeline Management for High-Performance Computing with comprehensive workflow...",
-  "version": "2.2.1",
+  "version": "2.2.3",
   "repository": {
     "url": "https://github.com/iowarp/clio-kit",
     "source": "github"
@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.2.1",
+      "version": "2.2.3",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.2.1 → clio_kit-2.2.3}/clio-kit-mcp-servers/lmod/server.json

@@ -3,7 +3,7 @@
   "name": "io.github.iowarp/lmod-mcp",
   "title": "CLIO Lmod",
   "description": "Lmod MCP - Environment Module Management for LLMs with comprehensive module operations",
-  "version": "2.2.1",
+  "version": "2.2.3",
   "repository": {
     "url": "https://github.com/iowarp/clio-kit",
     "source": "github"
@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.2.1",
+      "version": "2.2.3",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.2.1 → clio_kit-2.2.3}/clio-kit-mcp-servers/ndp/server.json

@@ -3,7 +3,7 @@
   "name": "io.github.iowarp/ndp-mcp",
   "title": "CLIO Ndp",
   "description": "National Data Platform (NDP) MCP server for searching and discovering datasets across multiple...",
-  "version": "2.2.1",
+  "version": "2.2.3",
   "repository": {
     "url": "https://github.com/iowarp/clio-kit",
     "source": "github"
@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.2.1",
+      "version": "2.2.3",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.2.1 → clio_kit-2.2.3}/clio-kit-mcp-servers/ndp/src/ndp_mcp/server.py

@@ -2,7 +2,6 @@ import asyncio
 import os
 import shutil
 import subprocess
-import tempfile
 from pathlib import Path
 from typing import Annotated, Any
 
@@ -56,29 +55,39 @@ _SIZE_UNITS = {
 }
 
 
-def artifacts_root() -> Path:
+def artifacts_root(output_dir: str | Path | None = None) -> Path:
     """Return the writable root for staged resources and generated artifacts.
 
-    Configurable via the ``CLIO_KIT_ARTIFACTS`` environment variable; otherwise a
-    stable per-user temp directory is used. No clio-agent paths are hardcoded.
+    Precedence: an explicit ``output_dir`` (caller-supplied destination) wins;
+    otherwise the ``CLIO_KIT_ARTIFACTS`` environment variable; otherwise the
+    current working directory. Falling back to the process CWD lets a caller
+    that launches the server with a chosen working directory control where
+    artifacts land by default. The tool writes where it is told — no destination
+    is hardcoded and nothing is rerouted.
     """
+    explicit = str(output_dir).strip() if output_dir not in (None, "") else ""
     configured = os.environ.get("CLIO_KIT_ARTIFACTS", "").strip()
-    if configured:
+    if explicit:
+        root = Path(explicit).expanduser()
+    elif configured:
         root = Path(configured).expanduser()
     else:
-        root = Path(tempfile.gettempdir()) / "clio-kit-ndp-artifacts"
+        root = Path.cwd()
     root.mkdir(parents=True, exist_ok=True)
     return root.resolve()
 
 
-def _validate_output_path(candidate: str | Path, *, default_name: str) -> Path:
-    """Resolve an output path, confining writes to the configurable artifacts root.
+def _validate_output_path(
+    candidate: str | Path, *, default_name: str, output_dir: str | Path | None = None
+) -> Path:
+    """Resolve an output path, confining writes to the resolved artifacts root.
 
-    A relative path, bare filename, or any path outside the artifacts root is
-    relocated under the artifacts root using only its filename. This is the
-    standalone allowed-root check (no clio-agent file policy dependency).
+    The root is ``output_dir`` if supplied (the caller's chosen destination),
+    else the configurable artifacts root. A relative path, bare filename, or any
+    path outside that root is relocated under it using only its filename — a
+    self-contained allowed-root check with no external dependency.
     """
-    root = artifacts_root()
+    root = artifacts_root(output_dir)
     raw = Path(str(candidate)).expanduser() if candidate else Path(default_name)
     name = raw.name or default_name
     if raw.is_absolute():
@@ -540,6 +549,15 @@ async def stage_resource(
         str | None,
         Field(description="Optional filename for the staged file; derived from URL if omitted."),
     ] = None,
+    output_dir: Annotated[
+        str | None,
+        Field(
+            description=(
+                "Optional destination directory for the staged file. Defaults to "
+                "CLIO_KIT_ARTIFACTS or the current working directory if omitted."
+            )
+        ),
+    ] = None,
     max_bytes: Annotated[
         int | str | None,
         Field(description="Maximum download size in bytes (default 50 MiB)."),
@@ -565,7 +583,9 @@ async def stage_resource(
     max_stage_bytes = _clean_max_bytes(max_bytes)
     filename_source = output_name or Path(target_url.split("?", 1)[0]).name
     filename = _safe_filename(filename_source, default="ndp-resource")
-    output_path = _validate_output_path(filename, default_name="ndp-resource")
+    output_path = _validate_output_path(
+        filename, default_name="ndp-resource", output_dir=output_dir
+    )
 
     is_osdf = target_url.lower().startswith("osdf://")
     if is_osdf:

{clio_kit-2.2.1 → clio_kit-2.2.3}/clio-kit-mcp-servers/node-hardware/server.json

@@ -3,7 +3,7 @@
   "name": "io.github.iowarp/node-hardware-mcp",
   "title": "CLIO Node Hardware",
   "description": "Node Hardware MCP - Comprehensive Hardware Monitoring and System Analysis for LLMs with...",
-  "version": "2.2.1",
+  "version": "2.2.3",
   "repository": {
     "url": "https://github.com/iowarp/clio-kit",
     "source": "github"
@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.2.1",
+      "version": "2.2.3",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.2.1 → clio_kit-2.2.3}/clio-kit-mcp-servers/pandas/server.json

@@ -3,7 +3,7 @@
   "name": "io.github.iowarp/pandas-mcp",
   "title": "CLIO Pandas",
   "description": "Pandas MCP - Advanced Data Analysis for LLMs with comprehensive pandas operations",
-  "version": "2.2.1",
+  "version": "2.2.3",
   "repository": {
     "url": "https://github.com/iowarp/clio-kit",
     "source": "github"
@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.2.1",
+      "version": "2.2.3",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.2.1 → clio_kit-2.2.3}/clio-kit-mcp-servers/parallel-sort/server.json

@@ -3,7 +3,7 @@
   "name": "io.github.iowarp/parallel-sort-mcp",
   "title": "CLIO Parallel Sort",
   "description": "Parallel Sort MCP - High-Performance Log File Processing for LLMs with advanced sorting and analysis",
-  "version": "2.2.1",
+  "version": "2.2.3",
   "repository": {
     "url": "https://github.com/iowarp/clio-kit",
     "source": "github"
@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.2.1",
+      "version": "2.2.3",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.2.1 → clio_kit-2.2.3}/clio-kit-mcp-servers/paraview/server.json

@@ -3,7 +3,7 @@
   "name": "io.github.iowarp/paraview-mcp",
   "title": "CLIO Paraview",
   "description": "MCP server for ParaView scientific visualization",
-  "version": "2.2.1",
+  "version": "2.2.3",
   "repository": {
     "url": "https://github.com/iowarp/clio-kit",
     "source": "github"
@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.2.1",
+      "version": "2.2.3",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.2.1 → clio_kit-2.2.3}/clio-kit-mcp-servers/parquet/server.json

@@ -3,7 +3,7 @@
   "name": "io.github.iowarp/parquet-mcp",
   "title": "CLIO Parquet",
   "description": "MCP server for Apache Parquet files",
-  "version": "2.2.1",
+  "version": "2.2.3",
   "repository": {
     "url": "https://github.com/iowarp/clio-kit",
     "source": "github"
@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.2.1",
+      "version": "2.2.3",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.2.1 → clio_kit-2.2.3}/clio-kit-mcp-servers/plot/server.json

@@ -3,7 +3,7 @@
   "name": "io.github.iowarp/plot-mcp",
   "title": "CLIO Plot",
   "description": "MCP server for advanced data visualization and plotting operations",
-  "version": "2.2.1",
+  "version": "2.2.3",
   "repository": {
     "url": "https://github.com/iowarp/clio-kit",
     "source": "github"
@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.2.1",
+      "version": "2.2.3",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.2.1 → clio_kit-2.2.3}/clio-kit-mcp-servers/sac/server.json

@@ -3,7 +3,7 @@
   "name": "io.github.iowarp/sac-mcp",
   "title": "CLIO Sac",
   "description": "MCP server for analyzing SAC seismic-waveform files and TAR archives: inspect members, compute...",
-  "version": "2.2.1",
+  "version": "2.2.3",
   "repository": {
     "url": "https://github.com/iowarp/clio-kit",
     "source": "github"
@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.2.1",
+      "version": "2.2.3",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.2.1 → clio_kit-2.2.3}/clio-kit-mcp-servers/seismic/server.json

@@ -3,7 +3,7 @@
   "name": "io.github.iowarp/seismic-mcp",
   "title": "CLIO Seismic",
   "description": "MCP server for earthquake-sequence analysis on saved catalogs: completeness magnitude,...",
-  "version": "2.2.1",
+  "version": "2.2.3",
   "repository": {
     "url": "https://github.com/iowarp/clio-kit",
     "source": "github"
@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.2.1",
+      "version": "2.2.3",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.2.1 → clio_kit-2.2.3}/clio-kit-mcp-servers/slurm/server.json

@@ -3,7 +3,7 @@
   "name": "io.github.iowarp/slurm-mcp",
   "title": "CLIO Slurm",
   "description": "MCP server for Slurm workload management and HPC job scheduling",
-  "version": "2.2.1",
+  "version": "2.2.3",
   "repository": {
     "url": "https://github.com/iowarp/clio-kit",
     "source": "github"
@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.2.1",
+      "version": "2.2.3",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.2.1 → clio_kit-2.2.3}/clio-kit-mcp-servers/terrain/server.json

@@ -3,7 +3,7 @@
   "name": "io.github.iowarp/terrain-mcp",
   "title": "CLIO Terrain",
   "description": "MCP server for terrain analysis: DEM slope/aspect/suitability and point-cloud reading/gridding",
-  "version": "2.2.1",
+  "version": "2.2.3",
   "repository": {
     "url": "https://github.com/iowarp/clio-kit",
     "source": "github"
@@ -12,7 +12,7 @@
     {
       "registryType": "pypi",
       "identifier": "clio-kit",
-      "version": "2.2.1",
+      "version": "2.2.3",
       "transport": {
         "type": "stdio"
       },

{clio_kit-2.2.1 → clio_kit-2.2.3}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
 
 [project]
 name = "clio-kit"
-version = "2.2.1"
+version = "2.2.3"
 description = "CLIO Kit - MCP Servers, Clients, and Tools for AI Agents"
 readme = "README.md"
 requires-python = ">=3.10"