claudemol 0.1.0__tar.gz → 0.2.0__tar.gz

{claudemol-0.1.0 → claudemol-0.2.0}/PKG-INFO

@@ -1,9 +1,9 @@
 Metadata-Version: 2.4
 Name: claudemol
-Version: 0.1.0
+Version: 0.2.0
 Summary: PyMOL integration for Claude Code - control molecular visualization via natural language
-Project-URL: Homepage, https://github.com/ANaka/ai-mol
-Project-URL: Repository, https://github.com/ANaka/ai-mol
+Project-URL: Homepage, https://github.com/ANaka/claudemol
+Project-URL: Repository, https://github.com/ANaka/claudemol
 Author: Alex Naka
 License: MIT
 License-File: LICENSE
@@ -20,12 +20,10 @@ Classifier: Topic :: Scientific/Engineering :: Visualization
 Requires-Python: >=3.10
 Description-Content-Type: text/markdown
 
-# ai-mol: Control PyMOL with Claude Code
+# claudemol: Control PyMOL with Claude Code
 
 Control PyMOL through natural language using Claude Code. This integration enables conversational structural biology, molecular visualization, and analysis.
 
-https://github.com/user-attachments/assets/687f43dc-d45e-477e-ac2b-7438e175cb36
-
 ## Features
 
 - **Natural language control**: Tell Claude what you want to visualize and it executes PyMOL commands
@@ -49,30 +47,20 @@ Claude Code → TCP Socket (port 9880) → PyMOL Plugin → cmd.* execution
 
 ### Installation
 
-1. **Clone the repository:**
-
-   ```bash
-   git clone https://github.com/ANaka/ai-mol
-   cd ai-mol
-   ```
-
-2. **Set up the PyMOL plugin:**
-
-   Add this line to your `~/.pymolrc` (create it if it doesn't exist):
-
-   ```python
-   run /path/to/ai-mol/claude_socket_plugin.py
-   ```
+```bash
+pip install claudemol
+claudemol setup
+```
 
-   Replace `/path/to/ai-mol` with the actual path where you cloned the repository.
+This installs the package and configures PyMOL to auto-load the socket plugin.
 
-3. **Start using it:**
+### Start Using It
 
-   Open Claude Code in the `ai-mol` directory and say:
+Open Claude Code and say:
 
-   > "Open PyMOL and load structure 1UBQ"
+> "Open PyMOL and load structure 1UBQ"
 
-   Claude will launch PyMOL (with the socket listener active) and load the structure.
+Claude will launch PyMOL (with the socket listener active) and load the structure.
 
 ## Usage
 
@@ -126,9 +114,8 @@ Claude Code has built-in skills for common workflows:
 
 ### Plugin Not Loading
 
-- Verify the path in your `~/.pymolrc` is correct
+- Run `claudemol setup` to configure PyMOL
 - Check PyMOL's output for any error messages on startup
-- Try running `run /path/to/claude_socket_plugin.py` manually in PyMOL
 
 ### First-Time Setup Help
 
@@ -139,9 +126,9 @@ Run the `/pymol-setup` skill in Claude Code for guided setup assistance.
 The default socket port is **9880**. Both the plugin and Claude Code connection module use this port.
 
 Key files:
-- `claude_socket_plugin.py` - PyMOL plugin (headless, auto-loads via pymolrc)
-- `pymol_connection.py` - Python module for socket communication
-- `.claude/skills/` - Claude Code skills for PyMOL workflows
+- `src/claudemol/plugin.py` - PyMOL plugin (auto-loads via pymolrc)
+- `src/claudemol/connection.py` - Python module for socket communication
+- `claude-plugin/skills/` - Claude Code skills for PyMOL workflows
 
 ## Limitations
 

{claudemol-0.1.0 → claudemol-0.2.0}/README.md

@@ -1,9 +1,7 @@
-# ai-mol: Control PyMOL with Claude Code
+# claudemol: Control PyMOL with Claude Code
 
 Control PyMOL through natural language using Claude Code. This integration enables conversational structural biology, molecular visualization, and analysis.
 
-https://github.com/user-attachments/assets/687f43dc-d45e-477e-ac2b-7438e175cb36
-
 ## Features
 
 - **Natural language control**: Tell Claude what you want to visualize and it executes PyMOL commands
@@ -27,30 +25,20 @@ Claude Code → TCP Socket (port 9880) → PyMOL Plugin → cmd.* execution
 
 ### Installation
 
-1. **Clone the repository:**
-
-   ```bash
-   git clone https://github.com/ANaka/ai-mol
-   cd ai-mol
-   ```
-
-2. **Set up the PyMOL plugin:**
-
-   Add this line to your `~/.pymolrc` (create it if it doesn't exist):
-
-   ```python
-   run /path/to/ai-mol/claude_socket_plugin.py
-   ```
+```bash
+pip install claudemol
+claudemol setup
+```
 
-   Replace `/path/to/ai-mol` with the actual path where you cloned the repository.
+This installs the package and configures PyMOL to auto-load the socket plugin.
 
-3. **Start using it:**
+### Start Using It
 
-   Open Claude Code in the `ai-mol` directory and say:
+Open Claude Code and say:
 
-   > "Open PyMOL and load structure 1UBQ"
+> "Open PyMOL and load structure 1UBQ"
 
-   Claude will launch PyMOL (with the socket listener active) and load the structure.
+Claude will launch PyMOL (with the socket listener active) and load the structure.
 
 ## Usage
 
@@ -104,9 +92,8 @@ Claude Code has built-in skills for common workflows:
 
 ### Plugin Not Loading
 
-- Verify the path in your `~/.pymolrc` is correct
+- Run `claudemol setup` to configure PyMOL
 - Check PyMOL's output for any error messages on startup
-- Try running `run /path/to/claude_socket_plugin.py` manually in PyMOL
 
 ### First-Time Setup Help
 
@@ -117,9 +104,9 @@ Run the `/pymol-setup` skill in Claude Code for guided setup assistance.
 The default socket port is **9880**. Both the plugin and Claude Code connection module use this port.
 
 Key files:
-- `claude_socket_plugin.py` - PyMOL plugin (headless, auto-loads via pymolrc)
-- `pymol_connection.py` - Python module for socket communication
-- `.claude/skills/` - Claude Code skills for PyMOL workflows
+- `src/claudemol/plugin.py` - PyMOL plugin (auto-loads via pymolrc)
+- `src/claudemol/connection.py` - Python module for socket communication
+- `claude-plugin/skills/` - Claude Code skills for PyMOL workflows
 
 ## Limitations
 

{claudemol-0.1.0 → claudemol-0.2.0}/claude-plugin/README.md

@@ -1,23 +1,23 @@
-# ai-mol Skills for Claude Code
+# claudemol Skills for Claude Code
 
 PyMOL visualization skills for Claude Code.
 
 ## Installation
 
 ```bash
-/plugin marketplace add ANaka/ai-mol?path=claude-plugin
-/plugin install ai-mol-skills
+/plugin marketplace add ANaka/claudemol?path=claude-plugin
+/plugin install claudemol-skills
 ```
 
 Then restart Claude Code.
 
 ## Prerequisites
 
-You need the `ai-mol` pip package installed:
+You need the `claudemol` pip package installed:
 
 ```bash
-pip install ai-mol
-ai-mol setup
+pip install claudemol
+claudemol setup
 ```
 
 ## Available Skills

{claudemol-0.1.0 → claudemol-0.2.0}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "claudemol"
-version = "0.1.0"
+version = "0.2.0"
 description = "PyMOL integration for Claude Code - control molecular visualization via natural language"
 readme = "README.md"
 requires-python = ">=3.10"
@@ -24,8 +24,8 @@ dependencies = []
 claudemol = "claudemol.cli:main"
 
 [project.urls]
-Homepage = "https://github.com/ANaka/ai-mol"
-Repository = "https://github.com/ANaka/ai-mol"
+Homepage = "https://github.com/ANaka/claudemol"
+Repository = "https://github.com/ANaka/claudemol"
 
 [build-system]
 requires = ["hatchling"]

{claudemol-0.1.0 → claudemol-0.2.0}/src/claudemol/cli.py

@@ -138,7 +138,7 @@ Commands:
   info      Show installation info
 
 For Claude Code skills, install the claudemol-skills plugin:
-  /plugin marketplace add ANaka/ai-mol?path=claude-plugin
+  /plugin marketplace add ANaka/claudemol?path=claude-plugin
   /plugin install claudemol-skills
 """,
     )

{claudemol-0.1.0 → claudemol-0.2.0}/src/claudemol/connection.py

@@ -195,7 +195,7 @@ def launch_pymol(file_path=None, wait_for_socket=True, timeout=10.0):
     if not pymol_cmd:
         raise RuntimeError(
             "PyMOL not found. Please install PyMOL:\n"
-            "  - Run: ai-mol setup\n"
+            "  - Run: claudemol setup\n"
             "  - Or: pip install pymol-open-source-whl\n"
             "  - Or: brew install pymol (macOS)"
         )

{claudemol-0.1.0 → claudemol-0.2.0}/src/claudemol/view.py

@@ -4,7 +4,7 @@ Visual feedback helper for PyMOL.
 Provides a simple way to execute commands and save/view the result.
 
 Usage:
-    from ai_mol.view import pymol_view
+    from claudemol.view import pymol_view
 
     # Execute commands and save a snapshot
     path = pymol_view("cmd.fetch('1ubq'); cmd.show('cartoon')", name="ubq_cartoon")
@@ -21,7 +21,7 @@ from pathlib import Path
 
 DEFAULT_HOST = "localhost"
 DEFAULT_PORT = 9880
-SCRATCH_DIR = Path.home() / ".ai-mol" / "scratch"
+SCRATCH_DIR = Path.home() / ".claudemol" / "scratch"
 
 
 def ensure_scratch_dir():