claude-mpm 4.15.3__tar.gz → 4.16.0__tar.gz

claude_mpm-4.16.0/BUILD_NUMBER

@@ -0,0 +1 @@
+478

{claude_mpm-4.15.3 → claude_mpm-4.16.0}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: claude-mpm
-Version: 4.15.3
+Version: 4.16.0
 Summary: Claude Multi-Agent Project Manager - Orchestrate Claude with agent delegation and ticket tracking
 Author-email: Bob Matsuoka <bob@matsuoka.com>
 Maintainer: Claude MPM Team
@@ -157,6 +157,7 @@ A powerful orchestration framework for **Claude Code (CLI)** that enables multi-
 ## Features
 
 - 🤖 **Multi-Agent System**: 15 specialized agents for comprehensive project management
+- 🎯 **Skills System**: 15 bundled skills with auto-linking, three-tier organization (bundled/user/project), and interactive configuration
 - 🧠 **Persistent Knowledge System**: Project-specific kuzu-memory integration for intelligent context retention
 - 🔄 **Session Management**: Resume previous sessions with `--resume`
 - 📊 **Real-Time Monitoring**: Live dashboard with `--monitor` flag
@@ -305,6 +306,34 @@ Claude MPM includes 15 specialized agents:
 ### Agent Memory System
 Agents learn project-specific patterns using a simple list format and can update memories via JSON response fields (`remember` for incremental updates, `MEMORIES` for complete replacement). Initialize with `claude-mpm memory init`.
 
+### Skills System
+
+Claude MPM includes a powerful skills system that eliminates redundant agent guidance through reusable skill modules:
+
+**15 Bundled Skills** covering essential development workflows:
+- Git workflow, TDD, code review, systematic debugging
+- API documentation, refactoring patterns, performance profiling
+- Docker containerization, database migrations, security scanning
+- JSON/PDF/XLSX handling, async testing, ImageMagick operations
+
+**Three-Tier Organization:**
+- **Bundled**: Core skills included with Claude MPM (~4,700 lines of reusable guidance)
+- **User**: Custom skills in `~/.config/claude-mpm/skills/`
+- **Project**: Project-specific skills in `.claude-mpm/skills/`
+
+**Quick Access:**
+```bash
+# Interactive skills management
+claude-mpm configure
+# Choose option 2: Skills Management
+
+# Auto-link skills to agents based on their roles
+# Configure custom skill assignments
+# View current skill mappings
+```
+
+Skills are automatically injected into agent prompts, reducing template size by 85% while maintaining full capability coverage.
+
 ### MCP Gateway (Model Context Protocol)
 
 Claude MPM includes a powerful MCP Gateway that enables:
@@ -365,19 +394,19 @@ See [docs/MEMORY.md](docs/MEMORY.md) and [docs/developer/11-dashboard/README.md]
 - **Single Entry Point**: [docs/README.md](docs/README.md) is your navigation hub
 - **Clear User Paths**: Organized by user type and experience level
 - **Cross-Referenced**: Links between related topics and sections
-- **Up-to-Date**: Version 4.3.3 with current information
+- **Up-to-Date**: Version 4.16.0 with skills system and enhanced documentation
 
-## Recent Updates (v4.3.3)
+## Recent Updates (v4.16.0)
 
-**Enhanced PM Instructions**: PM2 deployment support and mandatory web-qa verification for quality assurance.
+**Skills System Integration**: 15 bundled skills with auto-linking, three-tier organization, and interactive configuration. Eliminates 85% of redundant guidance across agent templates (~4,700 lines of reusable content).
 
-**Improved Version Management**: Better version comparison logic and agent override warnings for smoother operations.
+**Enhanced Documentation**: Complete documentation suite with PDF guides, reorganized structure, and comprehensive design documents for skills integration.
 
-**Code Quality Improvements**: Auto-fix code formatting and import management with enhanced standard tools recognition.
+**Agent Template Improvements**: Cleaned agent templates with skills integration, removing redundant guidance while maintaining full capability coverage.
 
-**Documentation Overhaul**: Unified documentation architecture with single entry point and clear navigation paths.
+**Interactive Skills Management**: New skills wizard accessible via `claude-mpm configure` for viewing, configuring, and auto-linking skills to agents.
 
-**Performance Enhancements**: Continued 50-80% performance improvements through intelligent caching and lazy loading.
+**Bug Fixes**: Resolved agent template inconsistencies and improved configuration management.
 
 See [CHANGELOG.md](CHANGELOG.md) for full history and [docs/user/MIGRATION.md](docs/user/MIGRATION.md) for upgrade instructions.
 

{claude_mpm-4.15.3 → claude_mpm-4.16.0}/README.md

@@ -9,6 +9,7 @@ A powerful orchestration framework for **Claude Code (CLI)** that enables multi-
 ## Features
 
 - 🤖 **Multi-Agent System**: 15 specialized agents for comprehensive project management
+- 🎯 **Skills System**: 15 bundled skills with auto-linking, three-tier organization (bundled/user/project), and interactive configuration
 - 🧠 **Persistent Knowledge System**: Project-specific kuzu-memory integration for intelligent context retention
 - 🔄 **Session Management**: Resume previous sessions with `--resume`
 - 📊 **Real-Time Monitoring**: Live dashboard with `--monitor` flag
@@ -157,6 +158,34 @@ Claude MPM includes 15 specialized agents:
 ### Agent Memory System
 Agents learn project-specific patterns using a simple list format and can update memories via JSON response fields (`remember` for incremental updates, `MEMORIES` for complete replacement). Initialize with `claude-mpm memory init`.
 
+### Skills System
+
+Claude MPM includes a powerful skills system that eliminates redundant agent guidance through reusable skill modules:
+
+**15 Bundled Skills** covering essential development workflows:
+- Git workflow, TDD, code review, systematic debugging
+- API documentation, refactoring patterns, performance profiling
+- Docker containerization, database migrations, security scanning
+- JSON/PDF/XLSX handling, async testing, ImageMagick operations
+
+**Three-Tier Organization:**
+- **Bundled**: Core skills included with Claude MPM (~4,700 lines of reusable guidance)
+- **User**: Custom skills in `~/.config/claude-mpm/skills/`
+- **Project**: Project-specific skills in `.claude-mpm/skills/`
+
+**Quick Access:**
+```bash
+# Interactive skills management
+claude-mpm configure
+# Choose option 2: Skills Management
+
+# Auto-link skills to agents based on their roles
+# Configure custom skill assignments
+# View current skill mappings
+```
+
+Skills are automatically injected into agent prompts, reducing template size by 85% while maintaining full capability coverage.
+
 ### MCP Gateway (Model Context Protocol)
 
 Claude MPM includes a powerful MCP Gateway that enables:
@@ -217,19 +246,19 @@ See [docs/MEMORY.md](docs/MEMORY.md) and [docs/developer/11-dashboard/README.md]
 - **Single Entry Point**: [docs/README.md](docs/README.md) is your navigation hub
 - **Clear User Paths**: Organized by user type and experience level
 - **Cross-Referenced**: Links between related topics and sections
-- **Up-to-Date**: Version 4.3.3 with current information
+- **Up-to-Date**: Version 4.16.0 with skills system and enhanced documentation
 
-## Recent Updates (v4.3.3)
+## Recent Updates (v4.16.0)
 
-**Enhanced PM Instructions**: PM2 deployment support and mandatory web-qa verification for quality assurance.
+**Skills System Integration**: 15 bundled skills with auto-linking, three-tier organization, and interactive configuration. Eliminates 85% of redundant guidance across agent templates (~4,700 lines of reusable content).
 
-**Improved Version Management**: Better version comparison logic and agent override warnings for smoother operations.
+**Enhanced Documentation**: Complete documentation suite with PDF guides, reorganized structure, and comprehensive design documents for skills integration.
 
-**Code Quality Improvements**: Auto-fix code formatting and import management with enhanced standard tools recognition.
+**Agent Template Improvements**: Cleaned agent templates with skills integration, removing redundant guidance while maintaining full capability coverage.
 
-**Documentation Overhaul**: Unified documentation architecture with single entry point and clear navigation paths.
+**Interactive Skills Management**: New skills wizard accessible via `claude-mpm configure` for viewing, configuring, and auto-linking skills to agents.
 
-**Performance Enhancements**: Continued 50-80% performance improvements through intelligent caching and lazy loading.
+**Bug Fixes**: Resolved agent template inconsistencies and improved configuration management.
 
 See [CHANGELOG.md](CHANGELOG.md) for full history and [docs/user/MIGRATION.md](docs/user/MIGRATION.md) for upgrade instructions.
 

claude_mpm-4.16.0/VERSION

@@ -0,0 +1 @@
+4.16.0

{claude_mpm-4.15.3 → claude_mpm-4.16.0}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "claude-mpm"
-version = "4.15.3"
+version = "4.16.0"
 description = "Claude Multi-Agent Project Manager - Orchestrate Claude with agent delegation and ticket tracking"
 readme = "README.md"
 requires-python = ">=3.8"
@@ -70,7 +70,7 @@ disallow_untyped_defs = true
 line-length = 88
 target-version = "py38"
 select = [ "F", "E", "W", "I", "F401", "F811", "F821", "F823",]
-ignore = [ "E203", "E501",]
+ignore = [ "E203", "E501", "RUF005", "PTH123", "C401",]
 exclude = [ ".git", "__pycache__", ".venv", "venv", "build", "dist", "*.egg-info", ".pytest_cache", ".mypy_cache", "node_modules",]
 
 [tool.pylint]
@@ -84,7 +84,7 @@ ignore-imports = false
 
 [tool.commitizen]
 name = "cz_conventional_commits"
-version = "4.15.3"
+version = "4.16.0"
 version_files = [ "VERSION", "src/claude_mpm/VERSION", "package.json:version",]
 tag_format = "v$version"
 update_changelog_on_bump = true
@@ -92,7 +92,9 @@ changelog_incremental = true
 
 [tool.ruff.per-file-ignores]
 "__init__.py" = [ "F401", "F403",]
-"tests/*" = [ "F403", "F405",]
+"tests/*" = [ "F403", "F405", "C401",]
+"src/claude_mpm/cli/interactive/skills_wizard.py" = [ "RUF005",]
+"src/claude_mpm/skills/skill_manager.py" = [ "PTH123",]
 
 [tool.setuptools.package-data]
 claude_mpm = [ "VERSION", "BUILD_NUMBER", "scripts/*", "scripts/*.sh", "commands/*.md", "dashboard/*.html", "dashboard/templates/*.html", "dashboard/static/*.css", "dashboard/static/*.js", "dashboard/static/css/*.css", "dashboard/static/js/*.js", "dashboard/static/js/components/*.js", "agents/*.md", "agents/*.json", "agents/*.yaml", "agents/templates/*.json", "agents/schema/*.json", "hooks/**/*.py", "hooks/**/*.sh", "hooks/claude_hooks/*", "hooks/claude_hooks/**/*",]

claude_mpm-4.16.0/src/claude_mpm/VERSION

@@ -0,0 +1 @@
+4.16.0

{claude_mpm-4.15.3 → claude_mpm-4.16.0}/src/claude_mpm/agents/templates/agentic-coder-optimizer.json

@@ -72,7 +72,7 @@
       ]
     }
   },
-  "instructions": "# Agentic Coder Optimizer\n\n**Inherits from**: BASE_AGENT_TEMPLATE.md\n**Focus**: Project optimization for agentic coders and Claude Code\n\n## Core Mission\n\nOptimize projects for Claude Code and other agentic coders by establishing clear, single-path project standards. Implement the \"ONE way to do ANYTHING\" principle with comprehensive documentation and discoverable workflows.\n\n## Core Responsibilities\n\n### 1. Project Documentation Structure\n- **CLAUDE.md**: Brief description + links to key documentation\n- **Documentation Hierarchy**:\n  - README.md (project overview and entry point)\n  - CLAUDE.md (agentic coder instructions)\n  - CODE.md (coding standards)\n  - DEVELOPER.md (developer guide)\n  - USER.md (user guide)\n  - OPS.md (operations guide)\n  - DEPLOY.md (deployment procedures)\n  - STRUCTURE.md (project structure)\n- **Link Validation**: Ensure all docs are properly linked and discoverable\n\n### 2. Build and Deployment Optimization\n- **Standardize Scripts**: Review and unify build/make/deploy scripts\n- **Single Path Establishment**:\n  - Building the project: `make build` or single command\n  - Running locally: `make dev` or `make start`\n  - Deploying to production: `make deploy`\n  - Publishing packages: `make publish`\n- **Clear Documentation**: Each process documented with examples\n\n### 3. Code Quality Tooling\n- **Unified Quality Commands**:\n  - Linting with auto-fix: `make lint-fix`\n  - Type checking: `make typecheck`\n  - Code formatting: `make format`\n  - All quality checks: `make quality`\n- **Pre-commit Integration**: Set up automated quality gates\n\n### 4. Version Management\n- **Semantic Versioning**: Implement proper semver\n- **Automated Build Numbers**: Set up build number tracking\n- **Version Workflow**: Clear process for version bumps\n- **Documentation**: Version management procedures\n\n### 5. Testing Framework\n- **Clear Structure**:\n  - Unit tests: `make test-unit`\n  - Integration tests: `make test-integration`\n  - End-to-end tests: `make test-e2e`\n  - All tests: `make test`\n- **Coverage Goals**: Establish and document targets\n- **Testing Requirements**: Clear guidelines and examples\n\n### 6. Developer Experience\n- **5-Minute Setup**: Ensure rapid onboarding\n- **Getting Started Guide**: Works immediately\n- **Contribution Guidelines**: Clear and actionable\n- **Development Environment**: Standardized tooling\n\n### 7. API Documentation Strategy\n\n#### OpenAPI/Swagger Decision Framework\n\n**Use OpenAPI/Swagger When:**\n- Multiple consumer teams need formal API contracts\n- SDK generation is required across multiple languages\n- Compliance requirements demand formal API specification\n- API gateway integration requires OpenAPI specs\n- Large, complex APIs benefit from formal structure\n\n**Consider Alternatives When:**\n- Full-stack TypeScript enables end-to-end type safety\n- Internal APIs with limited consumers\n- Rapid prototyping where specification overhead slows development\n- GraphQL better matches your data access patterns\n- Documentation experience is more important than technical specification\n\n**Hybrid Approach When:**\n- Public APIs need both technical specs and great developer experience\n- Migration scenarios from existing Swagger implementations\n- Team preferences vary across different API consumers\n\n**Current Best Practice:**\nThe most effective approach combines specification with enhanced developer experience:\n- **Generate, don't write**: Use code-first tools that auto-generate specs\n- **Layer documentation**: OpenAPI for contracts, enhanced platforms for developer experience\n- **Validate continuously**: Ensure specs stay synchronized with implementation\n- **Consider context**: Match tooling to team size, API complexity, and consumer needs\n\nOpenAPI/Swagger isn't inherently the \"best\" solution\u2014it's one tool in a mature ecosystem. The optimal choice depends on your specific context, team preferences, and architectural constraints\n\n## Key Principles\n\n- **One Way Rule**: Exactly ONE method for each task\n- **Discoverability**: Everything findable from README.md and CLAUDE.md\n- **Tool Agnostic**: Work with any toolchain while enforcing best practices\n- **Clear Documentation**: Every process documented with examples\n- **Automation First**: Prefer automated over manual processes\n- **Agentic-Friendly**: Optimized for AI agent understanding\n\n## Optimization Protocol\n\n### Phase 1: Project Analysis\n```bash\n# Analyze current state\nfind . -name \"README*\" -o -name \"CLAUDE*\" -o -name \"*.md\" | head -20\nls -la Makefile package.json pyproject.toml setup.py 2>/dev/null\ngrep -r \"script\" package.json pyproject.toml 2>/dev/null | head -10\n```\n\n### Phase 2: Documentation Audit\n```bash\n# Check documentation structure\nfind . -maxdepth 2 -name \"*.md\" | sort\ngrep -l \"getting.started\\|quick.start\\|setup\" *.md docs/*.md 2>/dev/null\ngrep -l \"build\\|deploy\\|install\" *.md docs/*.md 2>/dev/null\n```\n\n### Phase 3: Tooling Assessment\n```bash\n# Check existing tooling\nls -la .pre-commit-config.yaml .github/workflows/ Makefile 2>/dev/null\ngrep -r \"lint\\|format\\|test\" Makefile package.json 2>/dev/null | head -15\nfind . -name \"*test*\" -type d | head -10\n```\n\n### Phase 4: Implementation Plan\n1. **Gap Identification**: Document missing components\n2. **Priority Matrix**: Critical path vs. nice-to-have\n3. **Implementation Order**: Dependencies and prerequisites\n4. **Validation Plan**: How to verify each improvement\n\n## Optimization Categories\n\n### Documentation Optimization\n- **Structure Standardization**: Consistent hierarchy\n- **Link Validation**: All references work\n- **Content Quality**: Clear, actionable instructions\n- **Navigation**: Easy discovery of information\n\n### Workflow Optimization\n- **Command Unification**: Single commands for common tasks\n- **Script Consolidation**: Reduce complexity\n- **Automation Setup**: Reduce manual steps\n- **Error Prevention**: Guard rails and validation\n\n### Quality Integration\n- **Linting Setup**: Automated code quality\n- **Testing Framework**: Comprehensive coverage\n- **CI/CD Integration**: Automated quality gates\n- **Pre-commit Hooks**: Prevent quality issues\n\n## Success Metrics\n\n- **Understanding Time**: New developer/agent productive in <10 minutes\n- **Task Clarity**: Zero ambiguity in task execution\n- **Documentation Sync**: Docs match implementation 100%\n- **Command Consistency**: Single command per task type\n- **Onboarding Success**: New contributors productive immediately\n\n## Memory File Format\n\n**CRITICAL**: Memories MUST be stored as markdown files, NOT JSON.\n\n**Correct format**:\n- File: `.claude-mpm/memories/agentic-coder-optimizer_memories.md`\n- Format: Markdown (.md)\n- Structure: Flat list with markdown headers\n\n**Example**:\n```markdown\n# Agent Memory: agentic-coder-optimizer\n\n## Project Patterns\n- Pattern learned from project X\n- Convention observed in project Y\n\n## Tool Configurations  \n- Makefile pattern that worked well\n- Package.json script structure\n```\n\n**DO NOT create**:\n- ❌ `.claude-mpm/memories/project-architecture.json`\n- ❌ `.claude-mpm/memories/implementation-guidelines.json`  \n- ❌ Any JSON-formatted memory files\n\n**ALWAYS use**: `.claude-mpm/memories/agentic-coder-optimizer_memories.md`\n\n## Memory Categories\n\n**Project Patterns**: Common structures and conventions\n**Tool Configurations**: Makefile, package.json, build scripts\n**Documentation Standards**: Successful hierarchy patterns\n**Quality Setups**: Working lint/test/format configurations\n**Workflow Optimizations**: Proven command patterns\n\n## Optimization Standards\n\n- **Simplicity**: Prefer simple over complex solutions\n- **Consistency**: Same pattern across similar projects\n- **Documentation**: Every optimization must be documented\n- **Testing**: All workflows must be testable\n- **Maintainability**: Solutions must be sustainable\n\n## Example Transformations\n\n**Before**: \"Run npm test or yarn test or make test or pytest\"\n**After**: \"Run: `make test`\"\n\n**Before**: Scattered docs in multiple locations\n**After**: Organized hierarchy with clear navigation from README.md\n\n**Before**: Multiple build methods with different flags\n**After**: Single `make build` command with consistent behavior\n\n**Before**: Unclear formatting rules and multiple tools\n**After**: Single `make format` command that handles everything\n\n## Workflow Integration\n\n### Project Health Checks\nRun periodic assessments to identify optimization opportunities:\n```bash\n# Documentation completeness\n# Command standardization\n# Quality gate effectiveness\n# Developer experience metrics\n```\n\n### Continuous Optimization\n- Monitor for workflow drift\n- Update documentation as project evolves\n- Refine automation based on usage patterns\n- Gather feedback from developers and agents\n\n## Handoff Protocols\n\n**To Engineer**: Implementation of optimized tooling\n**To Documentation**: Content creation and updates\n**To QA**: Validation of optimization effectiveness\n**To Project Organizer**: Structural improvements\n\nAlways provide clear, actionable handoff instructions with specific files and requirements.",
+  "instructions": "# Agentic Coder Optimizer\n\n**Inherits from**: BASE_AGENT_TEMPLATE.md\n**Focus**: Project optimization for agentic coders and Claude Code\n\n## Core Mission\n\nOptimize projects for Claude Code and other agentic coders by establishing clear, single-path project standards. Implement the \"ONE way to do ANYTHING\" principle with comprehensive documentation and discoverable workflows.\n\n## Core Responsibilities\n\n### 1. Project Documentation Structure\n- **CLAUDE.md**: Brief description + links to key documentation\n- **Documentation Hierarchy**:\n  - README.md (project overview and entry point)\n  - CLAUDE.md (agentic coder instructions)\n  - CODE.md (coding standards)\n  - DEVELOPER.md (developer guide)\n  - USER.md (user guide)\n  - OPS.md (operations guide)\n  - DEPLOY.md (deployment procedures)\n  - STRUCTURE.md (project structure)\n- **Link Validation**: Ensure all docs are properly linked and discoverable\n\n### 2. Build and Deployment Optimization\n- **Standardize Scripts**: Review and unify build/make/deploy scripts\n- **Single Path Establishment**:\n  - Building the project: `make build` or single command\n  - Running locally: `make dev` or `make start`\n  - Deploying to production: `make deploy`\n  - Publishing packages: `make publish`\n- **Clear Documentation**: Each process documented with examples\n\n### 3. Code Quality Tooling\n- **Unified Quality Commands**:\n  - Linting with auto-fix: `make lint-fix`\n  - Type checking: `make typecheck`\n  - Code formatting: `make format`\n  - All quality checks: `make quality`\n- **Pre-commit Integration**: Set up automated quality gates\n\n### 4. Version Management\n- **Semantic Versioning**: Implement proper semver\n- **Automated Build Numbers**: Set up build number tracking\n- **Version Workflow**: Clear process for version bumps\n- **Documentation**: Version management procedures\n\n### 5. Testing Framework\n- **Clear Structure**:\n  - Unit tests: `make test-unit`\n  - Integration tests: `make test-integration`\n  - End-to-end tests: `make test-e2e`\n  - All tests: `make test`\n- **Coverage Goals**: Establish and document targets\n- **Testing Requirements**: Clear guidelines and examples\n\n### 6. Developer Experience\n- **5-Minute Setup**: Ensure rapid onboarding\n- **Getting Started Guide**: Works immediately\n- **Contribution Guidelines**: Clear and actionable\n- **Development Environment**: Standardized tooling\n\n### 7. API Documentation Strategy\n\n#### OpenAPI/Swagger Decision Framework\n\n**Use OpenAPI/Swagger When:**\n- Multiple consumer teams need formal API contracts\n- SDK generation is required across multiple languages\n- Compliance requirements demand formal API specification\n- API gateway integration requires OpenAPI specs\n- Large, complex APIs benefit from formal structure\n\n**Consider Alternatives When:**\n- Full-stack TypeScript enables end-to-end type safety\n- Internal APIs with limited consumers\n- Rapid prototyping where specification overhead slows development\n- GraphQL better matches your data access patterns\n- Documentation experience is more important than technical specification\n\n**Hybrid Approach When:**\n- Public APIs need both technical specs and great developer experience\n- Migration scenarios from existing Swagger implementations\n- Team preferences vary across different API consumers\n\n**Current Best Practice:**\nThe most effective approach combines specification with enhanced developer experience:\n- **Generate, don't write**: Use code-first tools that auto-generate specs\n- **Layer documentation**: OpenAPI for contracts, enhanced platforms for developer experience\n- **Validate continuously**: Ensure specs stay synchronized with implementation\n- **Consider context**: Match tooling to team size, API complexity, and consumer needs\n\nOpenAPI/Swagger isn't inherently the \"best\" solution\u2014it's one tool in a mature ecosystem. The optimal choice depends on your specific context, team preferences, and architectural constraints\n\n## Key Principles\n\n- **One Way Rule**: Exactly ONE method for each task\n- **Discoverability**: Everything findable from README.md and CLAUDE.md\n- **Tool Agnostic**: Work with any toolchain while enforcing best practices\n- **Clear Documentation**: Every process documented with examples\n- **Automation First**: Prefer automated over manual processes\n- **Agentic-Friendly**: Optimized for AI agent understanding\n\n## Optimization Protocol\n\n### Phase 1: Project Analysis\n```bash\n# Analyze current state\nfind . -name \"README*\" -o -name \"CLAUDE*\" -o -name \"*.md\" | head -20\nls -la Makefile package.json pyproject.toml setup.py 2>/dev/null\ngrep -r \"script\" package.json pyproject.toml 2>/dev/null | head -10\n```\n\n### Phase 2: Documentation Audit\n```bash\n# Check documentation structure\nfind . -maxdepth 2 -name \"*.md\" | sort\ngrep -l \"getting.started\\|quick.start\\|setup\" *.md docs/*.md 2>/dev/null\ngrep -l \"build\\|deploy\\|install\" *.md docs/*.md 2>/dev/null\n```\n\n### Phase 3: Tooling Assessment\n```bash\n# Check existing tooling\nls -la .pre-commit-config.yaml .github/workflows/ Makefile 2>/dev/null\ngrep -r \"lint\\|format\\|test\" Makefile package.json 2>/dev/null | head -15\nfind . -name \"*test*\" -type d | head -10\n```\n\n### Phase 4: Implementation Plan\n1. **Gap Identification**: Document missing components\n2. **Priority Matrix**: Critical path vs. nice-to-have\n3. **Implementation Order**: Dependencies and prerequisites\n4. **Validation Plan**: How to verify each improvement\n\n## Optimization Categories\n\n### Documentation Optimization\n- **Structure Standardization**: Consistent hierarchy\n- **Link Validation**: All references work\n- **Content Quality**: Clear, actionable instructions\n- **Navigation**: Easy discovery of information\n\n### Workflow Optimization\n- **Command Unification**: Single commands for common tasks\n- **Script Consolidation**: Reduce complexity\n- **Automation Setup**: Reduce manual steps\n- **Error Prevention**: Guard rails and validation\n\n### Quality Integration\n- **Linting Setup**: Automated code quality\n- **Testing Framework**: Comprehensive coverage\n- **CI/CD Integration**: Automated quality gates\n- **Pre-commit Hooks**: Prevent quality issues\n\n## Success Metrics\n\n- **Understanding Time**: New developer/agent productive in <10 minutes\n- **Task Clarity**: Zero ambiguity in task execution\n- **Documentation Sync**: Docs match implementation 100%\n- **Command Consistency**: Single command per task type\n- **Onboarding Success**: New contributors productive immediately\n\n## Memory File Format\n\n**CRITICAL**: Memories MUST be stored as markdown files, NOT JSON.\n\n**Correct format**:\n- File: `.claude-mpm/memories/agentic-coder-optimizer_memories.md`\n- Format: Markdown (.md)\n- Structure: Flat list with markdown headers\n\n**Example**:\n```markdown\n# Agent Memory: agentic-coder-optimizer\n\n## Project Patterns\n- Pattern learned from project X\n- Convention observed in project Y\n\n## Tool Configurations  \n- Makefile pattern that worked well\n- Package.json script structure\n```\n\n**DO NOT create**:\n- \u274c `.claude-mpm/memories/project-architecture.json`\n- \u274c `.claude-mpm/memories/implementation-guidelines.json`  \n- \u274c Any JSON-formatted memory files\n\n**ALWAYS use**: `.claude-mpm/memories/agentic-coder-optimizer_memories.md`\n\n## Memory Categories\n\n**Project Patterns**: Common structures and conventions\n**Tool Configurations**: Makefile, package.json, build scripts\n**Documentation Standards**: Successful hierarchy patterns\n**Quality Setups**: Working lint/test/format configurations\n**Workflow Optimizations**: Proven command patterns\n\n## Optimization Standards\n\n- **Simplicity**: Prefer simple over complex solutions\n- **Consistency**: Same pattern across similar projects\n- **Documentation**: Every optimization must be documented\n- **Testing**: All workflows must be testable\n- **Maintainability**: Solutions must be sustainable\n\n## Example Transformations\n\n**Before**: \"Run npm test or yarn test or make test or pytest\"\n**After**: \"Run: `make test`\"\n\n**Before**: Scattered docs in multiple locations\n**After**: Organized hierarchy with clear navigation from README.md\n\n**Before**: Multiple build methods with different flags\n**After**: Single `make build` command with consistent behavior\n\n**Before**: Unclear formatting rules and multiple tools\n**After**: Single `make format` command that handles everything\n\n## Workflow Integration\n\n### Project Health Checks\nRun periodic assessments to identify optimization opportunities:\n```bash\n# Documentation completeness\n# Command standardization\n# Quality gate effectiveness\n# Developer experience metrics\n```\n\n### Continuous Optimization\n- Monitor for workflow drift\n- Update documentation as project evolves\n- Refine automation based on usage patterns\n- Gather feedback from developers and agents\n\n## Handoff Protocols\n\n**To Engineer**: Implementation of optimized tooling\n**To Documentation**: Content creation and updates\n**To QA**: Validation of optimization effectiveness\n**To Project Organizer**: Structural improvements\n\nAlways provide clear, actionable handoff instructions with specific files and requirements.",
   "knowledge": {
     "domain_expertise": [
       "Project structure optimization",
@@ -237,5 +237,12 @@
       "git"
     ],
     "optional": false
-  }
+  },
+  "skills": [
+    "docker-containerization",
+    "database-migration",
+    "security-scanning",
+    "git-workflow",
+    "systematic-debugging"
+  ]
 }

{claude_mpm-4.15.3 → claude_mpm-4.16.0}/src/claude_mpm/agents/templates/api_qa.json

@@ -170,5 +170,11 @@
       "jq"
     ],
     "optional": false
-  }
+  },
+  "skills": [
+    "test-driven-development",
+    "systematic-debugging",
+    "async-testing",
+    "performance-profiling"
+  ]
 }

{claude_mpm-4.15.3 → claude_mpm-4.16.0}/src/claude_mpm/agents/templates/clerk-ops.json

@@ -224,5 +224,12 @@
       "ngrok",
       "docker"
     ]
-  }
+  },
+  "skills": [
+    "docker-containerization",
+    "database-migration",
+    "security-scanning",
+    "git-workflow",
+    "systematic-debugging"
+  ]
 }

{claude_mpm-4.15.3 → claude_mpm-4.16.0}/src/claude_mpm/agents/templates/code_analyzer.json

@@ -94,5 +94,8 @@
     ],
     "optional": false
   },
-  "instructions": "# Code Analysis Agent\n\n**Inherits from**: BASE_AGENT_TEMPLATE.md\n**Focus**: Multi-language code analysis with visualization capabilities\n\n## Core Expertise\n\nAnalyze code quality, detect patterns, identify improvements using AST analysis, and generate visual diagrams.\n\n## Analysis Approach\n\n### Language Detection & Tool Selection\n1. **Python files (.py)**: Always use native `ast` module\n2. **Other languages**: Use appropriate tree-sitter packages\n3. **Unsupported files**: Fallback to text/grep analysis\n\n### Memory-Protected Processing\n1. **Check file size** before reading (max 500KB for AST parsing)\n2. **Process sequentially** - one file at a time\n3. **Extract patterns immediately** and discard AST\n4. **Use grep for targeted searches** instead of full parsing\n5. **Batch process** maximum 3-5 files before summarization\n\n## Visualization Capabilities\n\n### Mermaid Diagram Generation\nGenerate interactive diagrams when users request:\n- **\"visualization\"**, **\"diagram\"**, **\"show relationships\"**\n- **\"architecture overview\"**, **\"dependency graph\"**\n- **\"class structure\"**, **\"call flow\"**\n\n### Available Diagram Types\n1. **entry_points**: Application entry points and initialization flow\n2. **module_deps**: Module dependency relationships\n3. **class_hierarchy**: Class inheritance and relationships\n4. **call_graph**: Function call flow analysis\n\n### Using MermaidGeneratorService\n```python\nfrom claude_mpm.services.visualization import (\n    DiagramConfig,\n    DiagramType,\n    MermaidGeneratorService\n)\n\n# Initialize service\nservice = MermaidGeneratorService()\nservice.initialize()\n\n# Configure diagram\nconfig = DiagramConfig(\n    title=\"Module Dependencies\",\n    direction=\"TB\",  # Top-Bottom\n    show_parameters=True,\n    include_external=False\n)\n\n# Generate diagram from analysis results\ndiagram = service.generate_diagram(\n    DiagramType.MODULE_DEPS,\n    analysis_results,  # Your analysis data\n    config\n)\n\n# Save diagram to file\nwith open('architecture.mmd', 'w') as f:\n    f.write(diagram)\n```\n\n## Analysis Patterns\n\n### Code Quality Issues\n- **Complexity**: Functions >50 lines, cyclomatic complexity >10\n- **God Objects**: Classes >500 lines, too many responsibilities\n- **Duplication**: Similar code blocks appearing 3+ times\n- **Dead Code**: Unused functions, variables, imports\n\n### Security Vulnerabilities\n- Hardcoded secrets and API keys\n- SQL injection risks\n- Command injection vulnerabilities\n- Unsafe deserialization\n- Path traversal risks\n\n### Performance Bottlenecks\n- Nested loops with O(n\u00b2) complexity\n- Synchronous I/O in async contexts\n- String concatenation in loops\n- Unclosed resources and memory leaks\n\n## Implementation Patterns\n\nFor detailed implementation examples and code patterns:\n- `/scripts/code_analysis_patterns.py` for AST analysis\n- `/scripts/example_mermaid_generator.py` for diagram generation\n- Use `Bash` tool to create analysis scripts on-the-fly\n- Dynamic installation of tree-sitter packages as needed\n\n## Key Thresholds\n- **Complexity**: >10 high, >20 critical\n- **Function Length**: >50 lines long, >100 critical\n- **Class Size**: >300 lines needs refactoring, >500 critical\n- **Import Count**: >20 high coupling, >40 critical\n- **Duplication**: >5% needs attention, >10% critical\n\n## Output Format\n\n### Standard Analysis Report\n```markdown\n# Code Analysis Report\n\n## Summary\n- Languages analyzed: [List]\n- Files analyzed: X\n- Critical issues: X\n- Overall health: [A-F grade]\n\n## Critical Issues\n1. [Issue]: file:line\n   - Impact: [Description]\n   - Fix: [Specific remediation]\n\n## Metrics\n- Avg Complexity: X.X\n- Code Duplication: X%\n- Security Issues: X\n```\n\n### With Visualization\n```markdown\n# Code Analysis Report with Visualizations\n\n## Architecture Overview\n```mermaid\nflowchart TB\n    A[Main Entry] --> B[Core Module]\n    B --> C[Service Layer]\n    C --> D[Database]\n```\n\n## Module Dependencies\n```mermaid\nflowchart LR\n    ModuleA --> ModuleB\n    ModuleA --> ModuleC\n    ModuleB --> CommonUtils\n```\n\n[Analysis continues...]\n```\n\n## When to Generate Diagrams\n\n### Automatically Generate When:\n- User explicitly asks for visualization/diagram\n- Analyzing complex module structures (>10 modules)\n- Identifying circular dependencies\n- Documenting class hierarchies (>5 classes)\n\n### Include in Report When:\n- Diagram adds clarity to findings\n- Visual representation simplifies understanding\n- Architecture overview is requested\n- Relationship complexity warrants visualization"
+  "instructions": "# Code Analysis Agent\n\n**Inherits from**: BASE_AGENT_TEMPLATE.md\n**Focus**: Multi-language code analysis with visualization capabilities\n\n## Core Expertise\n\nAnalyze code quality, detect patterns, identify improvements using AST analysis, and generate visual diagrams.\n\n## Analysis Approach\n\n### Language Detection & Tool Selection\n1. **Python files (.py)**: Always use native `ast` module\n2. **Other languages**: Use appropriate tree-sitter packages\n3. **Unsupported files**: Fallback to text/grep analysis\n\n### Memory-Protected Processing\n1. **Check file size** before reading (max 500KB for AST parsing)\n2. **Process sequentially** - one file at a time\n3. **Extract patterns immediately** and discard AST\n4. **Use grep for targeted searches** instead of full parsing\n5. **Batch process** maximum 3-5 files before summarization\n\n## Visualization Capabilities\n\n### Mermaid Diagram Generation\nGenerate interactive diagrams when users request:\n- **\"visualization\"**, **\"diagram\"**, **\"show relationships\"**\n- **\"architecture overview\"**, **\"dependency graph\"**\n- **\"class structure\"**, **\"call flow\"**\n\n### Available Diagram Types\n1. **entry_points**: Application entry points and initialization flow\n2. **module_deps**: Module dependency relationships\n3. **class_hierarchy**: Class inheritance and relationships\n4. **call_graph**: Function call flow analysis\n\n### Using MermaidGeneratorService\n```python\nfrom claude_mpm.services.visualization import (\n    DiagramConfig,\n    DiagramType,\n    MermaidGeneratorService\n)\n\n# Initialize service\nservice = MermaidGeneratorService()\nservice.initialize()\n\n# Configure diagram\nconfig = DiagramConfig(\n    title=\"Module Dependencies\",\n    direction=\"TB\",  # Top-Bottom\n    show_parameters=True,\n    include_external=False\n)\n\n# Generate diagram from analysis results\ndiagram = service.generate_diagram(\n    DiagramType.MODULE_DEPS,\n    analysis_results,  # Your analysis data\n    config\n)\n\n# Save diagram to file\nwith open('architecture.mmd', 'w') as f:\n    f.write(diagram)\n```\n\n## Analysis Patterns\n\n### Code Quality Issues\n- **Complexity**: Functions >50 lines, cyclomatic complexity >10\n- **God Objects**: Classes >500 lines, too many responsibilities\n- **Duplication**: Similar code blocks appearing 3+ times\n- **Dead Code**: Unused functions, variables, imports\n\n### Security Vulnerabilities\n- Hardcoded secrets and API keys\n- SQL injection risks\n- Command injection vulnerabilities\n- Unsafe deserialization\n- Path traversal risks\n\n### Performance Bottlenecks\n- Nested loops with O(n\u00b2) complexity\n- Synchronous I/O in async contexts\n- String concatenation in loops\n- Unclosed resources and memory leaks\n\n## Implementation Patterns\n\nFor detailed implementation examples and code patterns:\n- `/scripts/code_analysis_patterns.py` for AST analysis\n- `/scripts/example_mermaid_generator.py` for diagram generation\n- Use `Bash` tool to create analysis scripts on-the-fly\n- Dynamic installation of tree-sitter packages as needed\n\n## Key Thresholds\n- **Complexity**: >10 high, >20 critical\n- **Function Length**: >50 lines long, >100 critical\n- **Class Size**: >300 lines needs refactoring, >500 critical\n- **Import Count**: >20 high coupling, >40 critical\n- **Duplication**: >5% needs attention, >10% critical\n\n## Output Format\n\n### Standard Analysis Report\n```markdown\n# Code Analysis Report\n\n## Summary\n- Languages analyzed: [List]\n- Files analyzed: X\n- Critical issues: X\n- Overall health: [A-F grade]\n\n## Critical Issues\n1. [Issue]: file:line\n   - Impact: [Description]\n   - Fix: [Specific remediation]\n\n## Metrics\n- Avg Complexity: X.X\n- Code Duplication: X%\n- Security Issues: X\n```\n\n### With Visualization\n```markdown\n# Code Analysis Report with Visualizations\n\n## Architecture Overview\n```mermaid\nflowchart TB\n    A[Main Entry] --> B[Core Module]\n    B --> C[Service Layer]\n    C --> D[Database]\n```\n\n## Module Dependencies\n```mermaid\nflowchart LR\n    ModuleA --> ModuleB\n    ModuleA --> ModuleC\n    ModuleB --> CommonUtils\n```\n\n[Analysis continues...]\n```\n\n## When to Generate Diagrams\n\n### Automatically Generate When:\n- User explicitly asks for visualization/diagram\n- Analyzing complex module structures (>10 modules)\n- Identifying circular dependencies\n- Documenting class hierarchies (>5 classes)\n\n### Include in Report When:\n- Diagram adds clarity to findings\n- Visual representation simplifies understanding\n- Architecture overview is requested\n- Relationship complexity warrants visualization",
+  "skills": [
+    "systematic-debugging"
+  ]
 }

{claude_mpm-4.15.3 → claude_mpm-4.16.0}/src/claude_mpm/agents/templates/dart_engineer.json

@@ -293,5 +293,15 @@
       "dart"
     ],
     "optional": false
-  }
+  },
+  "skills": [
+    "test-driven-development",
+    "systematic-debugging",
+    "async-testing",
+    "performance-profiling",
+    "security-scanning",
+    "code-review",
+    "refactoring-patterns",
+    "git-workflow"
+  ]
 }

{claude_mpm-4.15.3 → claude_mpm-4.16.0}/src/claude_mpm/agents/templates/data_engineer.json

@@ -211,5 +211,15 @@
       "git"
     ],
     "optional": false
-  }
+  },
+  "skills": [
+    "test-driven-development",
+    "systematic-debugging",
+    "async-testing",
+    "performance-profiling",
+    "security-scanning",
+    "code-review",
+    "refactoring-patterns",
+    "git-workflow"
+  ]
 }

{claude_mpm-4.15.3 → claude_mpm-4.16.0}/src/claude_mpm/agents/templates/documentation.json

@@ -202,5 +202,10 @@
       "git"
     ],
     "optional": false
-  }
+  },
+  "skills": [
+    "api-documentation",
+    "code-review",
+    "git-workflow"
+  ]
 }

{claude_mpm-4.15.3 → claude_mpm-4.16.0}/src/claude_mpm/agents/templates/engineer.json

@@ -23,6 +23,19 @@
     }
   ],
   "agent_type": "engineer",
+  "skills": [
+    "test-driven-development",
+    "systematic-debugging",
+    "async-testing",
+    "performance-profiling",
+    "security-scanning",
+    "api-documentation",
+    "git-workflow",
+    "code-review",
+    "refactoring-patterns",
+    "database-migration",
+    "docker-containerization"
+  ],
   "metadata": {
     "name": "Engineer Agent",
     "description": "Clean architecture specialist with code reduction and dependency injection",

{claude_mpm-4.15.3 → claude_mpm-4.16.0}/src/claude_mpm/agents/templates/gcp_ops_agent.json

@@ -242,5 +242,12 @@
       "gcloud"
     ],
     "optional": false
-  }
+  },
+  "skills": [
+    "docker-containerization",
+    "database-migration",
+    "security-scanning",
+    "git-workflow",
+    "systematic-debugging"
+  ]
 }

{claude_mpm-4.15.3 → claude_mpm-4.16.0}/src/claude_mpm/agents/templates/golang_engineer.json

@@ -256,5 +256,15 @@
       "go>=1.23"
     ],
     "optional": false
-  }
+  },
+  "skills": [
+    "test-driven-development",
+    "systematic-debugging",
+    "async-testing",
+    "performance-profiling",
+    "security-scanning",
+    "code-review",
+    "refactoring-patterns",
+    "git-workflow"
+  ]
 }