classy 3.2.3.2__tar.gz → 3.2.5.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (397) hide show
  1. {classy-3.2.3.2/classy.egg-info → classy-3.2.5.0}/PKG-INFO +1 -1
  2. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/.github/workflows/test_nightly.yml +25 -13
  3. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/.github/workflows/test_on_pull_request.yml +8 -5
  4. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/.github/workflows/test_on_push.yml +6 -4
  5. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/Makefile +8 -1
  6. classy-3.2.5.0/class_public/class +0 -0
  7. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/explanatory.ini +3 -0
  8. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/Calc2D/CalculationClass.py +2 -2
  9. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/Calc2D/Database.py +9 -9
  10. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/Calc2D/TransferFunction.py +1 -0
  11. classy-3.2.5.0/class_public/external/RealSpaceInterface/README +23 -0
  12. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/tornadoserver.py +5 -4
  13. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/include/background.h +1 -4
  14. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/include/common.h +1 -1
  15. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/include/distortions.h +2 -0
  16. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/include/fourier.h +3 -0
  17. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/include/harmonic.h +2 -0
  18. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/include/input.h +4 -3
  19. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/include/lensing.h +2 -0
  20. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/include/parser.h +13 -0
  21. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/include/perturbations.h +4 -0
  22. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/include/primordial.h +2 -0
  23. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/include/thermodynamics.h +1 -0
  24. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/include/transfer.h +3 -3
  25. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/python/cclassy.pxd +9 -0
  26. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/python/classy.pyx +461 -143
  27. classy-3.2.5.0/class_public/python/dist/classy-3.2.3-py3.10-linux-x86_64.egg +0 -0
  28. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/python/setup.py +2 -2
  29. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/python/test_class.py +95 -20
  30. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/source/background.c +4 -0
  31. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/source/distortions.c +3 -0
  32. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/source/fourier.c +12 -1
  33. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/source/harmonic.c +2 -0
  34. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/source/input.c +130 -117
  35. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/source/lensing.c +4 -0
  36. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/source/perturbations.c +29 -24
  37. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/source/primordial.c +4 -0
  38. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/source/thermodynamics.c +4 -0
  39. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/source/transfer.c +24 -22
  40. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/tools/parser.c +32 -0
  41. {classy-3.2.3.2 → classy-3.2.5.0/classy.egg-info}/PKG-INFO +1 -1
  42. {classy-3.2.3.2 → classy-3.2.5.0}/classy.egg-info/SOURCES.txt +1 -0
  43. {classy-3.2.3.2 → classy-3.2.5.0}/pyproject.toml +1 -1
  44. {classy-3.2.3.2 → classy-3.2.5.0}/setup.py +1 -1
  45. classy-3.2.3.2/class_public/class +0 -0
  46. classy-3.2.3.2/class_public/external/RealSpaceInterface/README +0 -18
  47. {classy-3.2.3.2 → classy-3.2.5.0}/MANIFEST.in +0 -0
  48. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/.gitignore +0 -0
  49. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/CLASS_rename.py +0 -0
  50. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/CPU.py +0 -0
  51. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/README.md +0 -0
  52. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/__init__.py +0 -0
  53. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/base_2015_plikHM_TT_lowTEB_lensing.ini +0 -0
  54. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/base_2018_plikHM_TTTEEE_lowl_lowE_lensing.ini +0 -0
  55. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/cl_permille.pre +0 -0
  56. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/cl_ref.pre +0 -0
  57. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/cpp/ClassEngine.cc +0 -0
  58. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/cpp/ClassEngine.hh +0 -0
  59. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/cpp/Engine.cc +0 -0
  60. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/cpp/Engine.hh +0 -0
  61. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/cpp/Makefile +0 -0
  62. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/cpp/README +0 -0
  63. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/cpp/testKlass.cc +0 -0
  64. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/default.ini +0 -0
  65. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/doc/README +0 -0
  66. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/doc/input/chap2.md +0 -0
  67. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/doc/input/chap3.md +0 -0
  68. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/doc/input/doxyconf +0 -0
  69. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/doc/input/doxygen.sty +0 -0
  70. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/doc/input/intro.md +0 -0
  71. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/doc/input/latex/class.aux +0 -0
  72. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/doc/input/latex/class.log +0 -0
  73. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/doc/input/latex/class.pdf +0 -0
  74. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/doc/input/latex/class.synctex.gz +0 -0
  75. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/doc/input/latex/class.tex +0 -0
  76. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/doc/input/make1.sh +0 -0
  77. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/doc/input/make2.sh +0 -0
  78. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/doc/input/mod.md +0 -0
  79. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/doc/manual/CLASS_MANUAL.pdf +0 -0
  80. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/HyRec2020/Alpha_inf.dat +0 -0
  81. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/HyRec2020/README.md +0 -0
  82. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/HyRec2020/R_inf.dat +0 -0
  83. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/HyRec2020/energy_injection.c +0 -0
  84. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/HyRec2020/energy_injection.h +0 -0
  85. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/HyRec2020/fit_swift.dat +0 -0
  86. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/HyRec2020/helium.c +0 -0
  87. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/HyRec2020/helium.h +0 -0
  88. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/HyRec2020/history.c +0 -0
  89. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/HyRec2020/history.h +0 -0
  90. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/HyRec2020/hydrogen.c +0 -0
  91. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/HyRec2020/hydrogen.h +0 -0
  92. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/HyRec2020/hyrec.c +0 -0
  93. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/HyRec2020/hyrectools.c +0 -0
  94. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/HyRec2020/hyrectools.h +0 -0
  95. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/HyRec2020/input.dat +0 -0
  96. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/HyRec2020/output_xe.dat +0 -0
  97. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/HyRec2020/readme.pdf +0 -0
  98. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/HyRec2020/two_photon_tables.dat +0 -0
  99. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/HyRec2020/two_photon_tables_hires.dat +0 -0
  100. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/HyRec2020/wrap_hyrec.c +0 -0
  101. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/HyRec2020/wrap_hyrec.h +0 -0
  102. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/Calc2D/DataGeneration.py +0 -0
  103. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/Calc2D/DataPropagation.py +0 -0
  104. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/Calc2D/__init__.py +0 -0
  105. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/Calc2D/rFourier.py +0 -0
  106. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/cache/.keep +0 -0
  107. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/colormap_converter.py +0 -0
  108. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/config.py +0 -0
  109. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/requirements.txt +0 -0
  110. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/css/custom.css +0 -0
  111. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/css/timeline.css +0 -0
  112. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/favicon-16x16.png +0 -0
  113. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/favicon-32x32.png +0 -0
  114. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/fonts/open-iconic/.gitignore +0 -0
  115. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/fonts/open-iconic/FONT-LICENSE +0 -0
  116. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/fonts/open-iconic/ICON-LICENSE +0 -0
  117. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/fonts/open-iconic/README.md +0 -0
  118. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/fonts/open-iconic/bower.json +0 -0
  119. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/fonts/open-iconic/font/css/open-iconic-bootstrap.css +0 -0
  120. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/fonts/open-iconic/font/css/open-iconic-bootstrap.less +0 -0
  121. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/fonts/open-iconic/font/css/open-iconic-bootstrap.min.css +0 -0
  122. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/fonts/open-iconic/font/css/open-iconic-bootstrap.scss +0 -0
  123. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/fonts/open-iconic/font/css/open-iconic-bootstrap.styl +0 -0
  124. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/fonts/open-iconic/font/css/open-iconic-foundation.css +0 -0
  125. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/fonts/open-iconic/font/css/open-iconic-foundation.less +0 -0
  126. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/fonts/open-iconic/font/css/open-iconic-foundation.min.css +0 -0
  127. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/fonts/open-iconic/font/css/open-iconic-foundation.scss +0 -0
  128. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/fonts/open-iconic/font/css/open-iconic-foundation.styl +0 -0
  129. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/fonts/open-iconic/font/css/open-iconic.css +0 -0
  130. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/fonts/open-iconic/font/css/open-iconic.less +0 -0
  131. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/fonts/open-iconic/font/css/open-iconic.min.css +0 -0
  132. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/fonts/open-iconic/font/css/open-iconic.scss +0 -0
  133. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/fonts/open-iconic/font/css/open-iconic.styl +0 -0
  134. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/fonts/open-iconic/font/fonts/open-iconic.eot +0 -0
  135. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/fonts/open-iconic/font/fonts/open-iconic.otf +0 -0
  136. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/fonts/open-iconic/font/fonts/open-iconic.svg +0 -0
  137. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/fonts/open-iconic/font/fonts/open-iconic.ttf +0 -0
  138. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/fonts/open-iconic/font/fonts/open-iconic.woff +0 -0
  139. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/fonts/open-iconic/package.json +0 -0
  140. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/images/cmap.png +0 -0
  141. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/images/colormaps/Default/default.png +0 -0
  142. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/images/colormaps/Diverging/RdYlBu.png +0 -0
  143. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/images/colormaps/Diverging/Spectral.png +0 -0
  144. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/images/colormaps/Diverging/seismic.png +0 -0
  145. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/images/colormaps/Miscellaneous/jet.png +0 -0
  146. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/images/colormaps/Uniform/inferno.png +0 -0
  147. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/images/colormaps/Uniform/magma.png +0 -0
  148. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/images/colormaps/Uniform/plasma.png +0 -0
  149. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/images/colormaps/Uniform/viridis.png +0 -0
  150. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/js/.Rhistory +0 -0
  151. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/js/RSI.js +0 -0
  152. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/js/gif.js +0 -0
  153. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/js/gif.worker.js +0 -0
  154. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/js/gridLayout.js +0 -0
  155. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/js/jquery.flot.axislabels.js +0 -0
  156. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/js/paramGui.js +0 -0
  157. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/js/parameterConfig.js +0 -0
  158. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/js/playerPanel.js +0 -0
  159. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/js/redshiftModal.js +0 -0
  160. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/js/simulation.js +0 -0
  161. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/js/simulationList.js +0 -0
  162. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/js/sockjs.min.js +0 -0
  163. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/threejs/Detector.js +0 -0
  164. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/threejs/controls/OrbitControls.js +0 -0
  165. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/static/threejs/libs/stats.min.js +0 -0
  166. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/external/RealSpaceInterface/templates/AlreadySimulatedModal.html +0 -0
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  343. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/output/test01_pk.dat +0 -0
  344. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/pk_ref.pre +0 -0
  345. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/plot_CLASS_output.m +0 -0
  346. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/psd_FD_single.dat +0 -0
  347. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/python/README +0 -0
  348. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/python/classy.cpp +0 -0
  349. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/python/classy.egg-info/PKG-INFO +0 -0
  350. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/python/classy.egg-info/SOURCES.txt +0 -0
  351. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/python/classy.egg-info/dependency_links.txt +0 -0
  352. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/python/classy.egg-info/top_level.txt +0 -0
  353. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/python/dist/classy-3.2.3-py3.8-linux-x86_64.egg +0 -0
  354. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/python/extract_errors.py +0 -0
  355. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/python/interface_generator.py +0 -0
  356. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/scripts/Growth_with_w.py +0 -0
  357. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/scripts/check_PPF_approx.py +0 -0
  358. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/scripts/cl_ST.py +0 -0
  359. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/scripts/cltt_terms.py +0 -0
  360. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/scripts/distances.py +0 -0
  361. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/scripts/many_times.py +0 -0
  362. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/scripts/neutrinohierarchy.py +0 -0
  363. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/scripts/one_k.py +0 -0
  364. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/scripts/one_time.py +0 -0
  365. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/scripts/thermo.py +0 -0
  366. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/scripts/varying_neff.py +0 -0
  367. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/scripts/varying_pann.py +0 -0
  368. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/scripts/warmup.py +0 -0
  369. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/source/output.c +0 -0
  370. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/test/test_background.c +0 -0
  371. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/test/test_fourier.c +0 -0
  372. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/test/test_harmonic.c +0 -0
  373. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/test/test_hyperspherical.c +0 -0
  374. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/test/test_loops.c +0 -0
  375. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/test/test_loops_omp.c +0 -0
  376. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/test/test_perturbations.c +0 -0
  377. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/test/test_thermodynamics.c +0 -0
  378. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/test/test_transfer.c +0 -0
  379. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/test.ini +0 -0
  380. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/test.py +0 -0
  381. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/tools/arrays.c +0 -0
  382. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/tools/common.c +0 -0
  383. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/tools/dei_rkck.c +0 -0
  384. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/tools/evolver_ndf15.c +0 -0
  385. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/tools/evolver_rkck.c +0 -0
  386. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/tools/growTable.c +0 -0
  387. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/tools/hermite3_interpolation_csource.h +0 -0
  388. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/tools/hermite4_interpolation_csource.h +0 -0
  389. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/tools/hermite6_interpolation_csource.h +0 -0
  390. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/tools/hyperspherical.c +0 -0
  391. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/tools/quadrature.c +0 -0
  392. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/tools/sparse.c +0 -0
  393. {classy-3.2.3.2 → classy-3.2.5.0}/class_public/tools/trigonometric_integrals.c +0 -0
  394. {classy-3.2.3.2 → classy-3.2.5.0}/classy.egg-info/dependency_links.txt +0 -0
  395. {classy-3.2.3.2 → classy-3.2.5.0}/classy.egg-info/requires.txt +0 -0
  396. {classy-3.2.3.2 → classy-3.2.5.0}/classy.egg-info/top_level.txt +0 -0
  397. {classy-3.2.3.2 → classy-3.2.5.0}/setup.cfg +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: classy
3
- Version: 3.2.3.2
3
+ Version: 3.2.5.0
4
4
  Summary: The class code from https://lesgourg.github.io/class_public/class.html
5
5
  Home-page: http://www.class-code.net
6
6
  Author: Julien Lesgourgues & Thomas Tram
@@ -41,7 +41,7 @@ jobs:
41
41
  if: needs.iftest.outputs.should_run > 0
42
42
  steps:
43
43
  - name: Checkout 🛎
44
- uses: actions/checkout@v2
44
+ uses: actions/checkout@v4
45
45
  with:
46
46
  path: main_class
47
47
  - name: Create or update virtual Python environment
@@ -60,7 +60,7 @@ jobs:
60
60
  OMP_NUM_THREADS=32 COMPARE_OUTPUT_GAUGE=1 TEST_LEVEL=3 nosetests -v -a test_scenario test_class.py --nologcapture --nocapture
61
61
  - name: Upload plots 📤
62
62
  if: success() || failure()
63
- uses: actions/upload-artifact@v2
63
+ uses: actions/upload-artifact@v4
64
64
  with:
65
65
  name: ComparePlots
66
66
  path: main_class/python/faulty_figs
@@ -72,23 +72,29 @@ jobs:
72
72
  timeout-minutes: 1440
73
73
  steps:
74
74
  - name: Checkout 🛎
75
- uses: actions/checkout@v2
75
+ uses: actions/checkout@v4
76
76
  with:
77
77
  path: main_class
78
78
  - name: Create or update virtual Python environment
79
79
  run: |
80
- rm -f venv/bin/python
80
+ rm -rf venv
81
81
  virtualenv venv
82
82
  source venv/bin/activate
83
83
  pip install --upgrade pip
84
84
  pip install numpy scipy pandas matplotlib cython nose parameterized
85
+ deactivate
85
86
  - name: make
86
- run: cd main_class && make OMPFLAG="" -j
87
+ run: |
88
+ source venv/bin/activate
89
+ cd main_class
90
+ make -j
91
+ deactivate
87
92
  - name: Generate input files
88
93
  run: |
89
94
  source venv/bin/activate
90
95
  cd main_class/python
91
- TEST_LEVEL=3 CLASS_VERBOSE=1 nosetests -a dump_ini_files test_class.py
96
+ TEST_LEVEL=3 VALGRIND_MODE=1 CLASS_VERBOSE=1 python "$(which nosetests)" -a dump_ini_files test_class.py
97
+ deactivate
92
98
  - name: Valgrind 🤖
93
99
  run: |
94
100
  cd main_class/python/faulty_figs
@@ -98,11 +104,11 @@ jobs:
98
104
  find . -name "*.ini" -type f -print0 | xargs -0 -I {} -n 1 -P 32 bash -c ': \
99
105
  && printf "\nk_step_sub = 10.0\nk_step_super = 0.4\nk_per_decade_for_pk = 2\nk_per_decade_for_bao = 5\n" >> {}'
100
106
  find . -name "*.ini" -type f -print0 | xargs -0 -I {} -n 1 -P 32 bash -c ': \
101
- && (valgrind --track-origins=yes --show-leak-kinds=all --leak-check=full --error-exitcode=3 ./class {} &> {}.out && echo {} "...ok") \
107
+ && (OMP_NUM_THREADS=1 valgrind --track-origins=yes --show-leak-kinds=all --leak-check=full --error-exitcode=3 ./class {} &> {}.out && echo {} "...ok") \
102
108
  || (echo {} "...fail" && cp {}* valgrind_output && exit 3)'
103
109
  - name: Upload errors 📤
104
110
  if: success() || failure()
105
- uses: actions/upload-artifact@v2
111
+ uses: actions/upload-artifact@v4
106
112
  with:
107
113
  name: ValgrindOutputWideShallow
108
114
  path: main_class/python/faulty_figs/valgrind_output
@@ -114,23 +120,29 @@ jobs:
114
120
  timeout-minutes: 1440
115
121
  steps:
116
122
  - name: Checkout 🛎
117
- uses: actions/checkout@v2
123
+ uses: actions/checkout@v4
118
124
  with:
119
125
  path: main_class
120
126
  - name: Create or update virtual Python environment
121
127
  run: |
122
- rm -f venv/bin/python
128
+ rm -rf venv
123
129
  virtualenv venv
124
130
  source venv/bin/activate
125
131
  pip install --upgrade pip
126
132
  pip install numpy scipy pandas matplotlib cython nose parameterized
133
+ deactivate
127
134
  - name: make
128
- run: cd main_class && make OMPFLAG="" -j
135
+ run: |
136
+ source venv/bin/activate
137
+ cd main_class
138
+ make -j
139
+ deactivate
129
140
  - name: Generate input files
130
141
  run: |
131
142
  source venv/bin/activate
132
143
  cd main_class/python
133
144
  TEST_LEVEL=1 CLASS_VERBOSE=1 nosetests -a dump_ini_files test_class.py
145
+ deactivate
134
146
  - name: Valgrind 🤖
135
147
  run: |
136
148
  cd main_class/python/faulty_figs
@@ -138,11 +150,11 @@ jobs:
138
150
  rm -rf valgrind_output && mkdir valgrind_output
139
151
  cp ../../class .
140
152
  find . -name "*.ini" -type f -print0 | xargs -0 -I {} -n 1 -P 32 bash -c ': \
141
- && (valgrind --track-origins=yes --show-leak-kinds=all --leak-check=full --error-exitcode=3 ./class {} &> {}.out && echo {} "...ok") \
153
+ && (OMP_NUM_THREADS=1 valgrind --track-origins=yes --show-leak-kinds=all --leak-check=full --error-exitcode=3 ./class {} &> {}.out && echo {} "...ok") \
142
154
  || (echo {} "...fail" && cp {}* valgrind_output && exit 3)'
143
155
  - name: Upload errors 📤
144
156
  if: success() || failure()
145
- uses: actions/upload-artifact@v2
157
+ uses: actions/upload-artifact@v4
146
158
  with:
147
159
  name: ValgrindOutputNarrowDeep
148
160
  path: main_class/python/faulty_figs/valgrind_output
@@ -8,11 +8,11 @@ jobs:
8
8
 
9
9
  steps:
10
10
  - name: Checkout 🛎
11
- uses: actions/checkout@v2
11
+ uses: actions/checkout@v4
12
12
  with:
13
13
  path: main_class
14
14
  - name: Checkout reference 🛎
15
- uses: actions/checkout@v2
15
+ uses: actions/checkout@v4
16
16
  with:
17
17
  ref: devel
18
18
  path: ref_class
@@ -23,8 +23,9 @@ jobs:
23
23
  source venv/bin/activate
24
24
  pip install --upgrade pip
25
25
  pip install numpy scipy pandas matplotlib cython nose parameterized
26
+ deactivate
26
27
  - name: make classy
27
- run: source venv/bin/activate && cd main_class && make -j
28
+ run: source venv/bin/activate && cd main_class && make -j && deactivate
28
29
  - name: make reference classy
29
30
  run: |
30
31
  source venv/bin/activate
@@ -32,14 +33,16 @@ jobs:
32
33
  sed -i.bak "s/'classy'/'classyref'/g" python/setup.py
33
34
  sed -i.bak 's/"classy"/"classyref"/g' python/setup.py
34
35
  make -j
36
+ deactivate
35
37
  - name: Testing 🤖
36
38
  run: |
37
39
  source venv/bin/activate
38
40
  cd main_class/python
39
- OMP_NUM_THREADS=16 COMPARE_OUTPUT_REF=1 TEST_LEVEL=2 nosetests -v -a test_scenario test_class.py --nologcapture --nocapture
41
+ OMP_NUM_THREADS=16 COMPARE_OUTPUT_REF=1 TEST_LEVEL=3 nosetests -v -a test_scenario test_class.py --nologcapture --nocapture
42
+ deactivate
40
43
  - name: Upload plots 📤
41
44
  if: success() || failure()
42
- uses: actions/upload-artifact@v2
45
+ uses: actions/upload-artifact@v4
43
46
  with:
44
47
  name: BranchVsMasterPlots
45
48
  path: main_class/python/faulty_figs
@@ -8,7 +8,7 @@ jobs:
8
8
 
9
9
  steps:
10
10
  - name: Checkout 🛎
11
- uses: actions/checkout@v2
11
+ uses: actions/checkout@v4
12
12
  with:
13
13
  path: main_class
14
14
  - name: make
@@ -21,7 +21,7 @@ jobs:
21
21
 
22
22
  steps:
23
23
  - name: Checkout 🛎
24
- uses: actions/checkout@v2
24
+ uses: actions/checkout@v4
25
25
  with:
26
26
  path: main_class
27
27
  - name: Create or update virtual Python environment
@@ -31,10 +31,12 @@ jobs:
31
31
  source venv/bin/activate
32
32
  pip install --upgrade pip
33
33
  pip install numpy scipy pandas matplotlib cython nose parameterized
34
+ deactivate
34
35
  - name: make classy
35
- run: source venv/bin/activate && cd main_class && make -j
36
+ run: source venv/bin/activate && cd main_class && make -j && deactivate
36
37
  - name: Testing 🤖
37
38
  run: |
38
39
  source venv/bin/activate
39
40
  cd main_class/python
40
- OMP_NUM_THREADS=16 TEST_LEVEL=1 nosetests -v -a test_scenario test_class.py --nologcapture --nocapture
41
+ OMP_NUM_THREADS=16 TEST_LEVEL=1 python "$(which nosetests)" -v -a test_scenario test_class.py --nologcapture --nocapture
42
+ deactivate
@@ -195,7 +195,14 @@ tar: $(C_ALL) $(C_TEST) $(H_ALL) $(PRE_ALL) $(INI_ALL) $(MISC_FILES) $(HYREC) $(
195
195
  tar czvf class.tar.gz $(C_ALL) $(H_ALL) $(PRE_ALL) $(INI_ALL) $(MISC_FILES) $(HYREC) $(PYTHON_FILES)
196
196
 
197
197
  classy: libclass.a python/classy.pyx python/cclassy.pxd
198
- cd python; export CC=$(CC); $(PYTHON) setup.py install || $(PYTHON) setup.py install --user
198
+ cd python; export CC=$(CC); output=$$($(PYTHON) -m pip install . 2>&1); \
199
+ echo "$$output"; \
200
+ if echo "$$output" | grep -q "ERROR: Cannot uninstall"; then \
201
+ site_packages=$$($(PYTHON) -c "import distutils.sysconfig; print(distutils.sysconfig.get_python_lib())" || $(PYTHON) -c "import site; print(site.getsitepackages()[0])") && \
202
+ echo "Cleaning up previous installation in: $$site_packages" && \
203
+ rm -rf $$site_packages/classy* && \
204
+ $(PYTHON) -m pip install .; \
205
+ fi
199
206
 
200
207
  clean: .base
201
208
  rm -rf $(WRKDIR);
Binary file
@@ -151,6 +151,9 @@ gauge = synchronous
151
151
  # (default: set to 'no')
152
152
  #nbody_gauge_transfer_functions = yes
153
153
 
154
+ # 4.c) Do you want the source functions for total non-relativistic matter, delta_m and theta_m, and baryon+cdm, delta_cb and theta_cb, to be outputed in the current gauge (the one selected in 4.a), instead of being automatically expressed as a gauge-invariant (GI) quantity, likeL: delta_m^GI=delta_m + 3 a H theta_m/k2, theta_m^GI=theta_m+alpha*k2 (default: no, that is, convert to GI)
155
+ #matter_source_in_current_gauge= no
156
+
154
157
  # 5) Hubble parameter : either 'H0' in km/s/Mpc or 'h' (or 'theta_s_100'), where
155
158
  # the latter is the peak scale parameter defined exactly as 100(ds_dec/da_dec)
156
159
  # with a decoupling time given by maximum of visibility function (quite different
@@ -71,7 +71,7 @@ class Calculation(object):
71
71
  Valuenew = dict()
72
72
  FValue_abs = np.abs(self.FValue)
73
73
  _min, _max = FValue_abs.min(), FValue_abs.max()
74
- dimensions = (self.endshape[0] / 2, self.endshape[1])
74
+ dimensions = (self.endshape[0] // 2, self.endshape[1])
75
75
  for quantity, FT in FValuenew.items():
76
76
  FT_abs = np.abs(FT)
77
77
  FT_normalized = cv2.resize(FT_abs, dimensions).ravel()
@@ -98,7 +98,7 @@ class Calculation(object):
98
98
  return Value.ravel(), cv2.resize(
99
99
  (np.abs(self.FValue) - np.abs(self.FValue).min()) /
100
100
  (np.abs(self.FValue).max() - np.abs(self.FValue).min()),
101
- (self.endshape[0] / 2, self.endshape[1])).ravel(), (minimum,
101
+ (self.endshape[0] // 2, self.endshape[1])).ravel(), (minimum,
102
102
  maximum)
103
103
 
104
104
  def getTransferData(self, redshiftindex):
@@ -14,22 +14,22 @@ class Database:
14
14
  self.db_path = os.path.join(directory, db_file)
15
15
  if not os.path.exists(self.db_path):
16
16
  logging.info("No database found; Creating one at {}.".format(self.db_path))
17
- with open(self.db_path, "w") as f:
17
+ with open(self.db_path, "wb") as f:
18
18
  pickle.dump(dict(), f)
19
19
 
20
20
  self.db = self.__read_database()
21
21
 
22
22
  def __read_database(self):
23
- with open(self.db_path) as f:
24
- return pickle.load(f)
23
+ with open(self.db_path, "rb") as f:
24
+ return pickle.load(f, encoding='latin1')
25
25
 
26
26
  def __write_database(self):
27
- with open(self.db_path, "w") as f:
28
- pickle.dump(self.db, f)
27
+ with open(self.db_path, "wb") as f:
28
+ pickle.dump(self.db, f, protocol=pickle.HIGHEST_PROTOCOL)
29
29
 
30
30
  def __create_file(self, data):
31
31
  filename = str(uuid.uuid4())
32
- with open(os.path.join(self.directory, filename), "w") as f:
32
+ with open(os.path.join(self.directory, filename), "wb") as f:
33
33
  pickle.dump(data, f)
34
34
  return filename
35
35
 
@@ -40,8 +40,8 @@ class Database:
40
40
  frozen_key = self.__get_frozen_key(key)
41
41
  if frozen_key in self.db:
42
42
  filename = self.db[frozen_key]
43
- with open(os.path.join(self.directory, filename)) as f:
44
- return pickle.load(f)
43
+ with open(os.path.join(self.directory, filename), "rb") as f:
44
+ return pickle.load(f, encoding='latin1')
45
45
  else:
46
46
  raise KeyError("No data for key: {}".format(key))
47
47
 
@@ -55,4 +55,4 @@ class Database:
55
55
  Return whether `self` contains a record
56
56
  for the given `key`.
57
57
  """
58
- return self.__get_frozen_key(key) in self.db
58
+ return self.__get_frozen_key(key) in self.db
@@ -42,6 +42,7 @@ def ComputeTransferFunctionList(cosmologicalParameters, redshift, kperdecade=200
42
42
  class_settings.update({
43
43
  "output": "mTk",
44
44
  "gauge": "newtonian",
45
+ "matter_source_in_current_gauge": "yes",
45
46
  "evolver": "1",
46
47
  "P_k_max_h/Mpc": P_k_max,
47
48
  "k_per_decade_for_pk": kperdecade,
@@ -0,0 +1,23 @@
1
+ CLASS real space interface
2
+ 07.2015: started by Max Beutelspacher
3
+ 09.2018: improved by Georgios Samaras and released in class v2.7.0
4
+ 10.2025: for v3.2.5: made compatible with python 3, credits Timothy Morton and Mowen Zhao
5
+
6
+
7
+ For installation of python packages, run
8
+
9
+ pip install -r requirements.txt
10
+
11
+ To see the real space interface, go to this directory (external/RealSpaceInterface/) and launch the application with
12
+
13
+ python tornadoserver.py
14
+
15
+ Then in any browser open the URL
16
+
17
+ http://localhost:7777
18
+
19
+ ------------------------------------------------------------
20
+
21
+ Cache files are located in cache/, so to clear the cache, run
22
+
23
+ rm cache/*
@@ -143,8 +143,8 @@ class DataConnection(tornado.websocket.WebSocketHandler):
143
143
  self.write_message(json.dumps({'type': 'extrema', 'extrema': extrema}))
144
144
  progress = float(redindex) / len(self.calc.redshift)
145
145
 
146
- real = {quantity: base64.b64encode(data.astype(np.float32)) for quantity, data in Valuenew.iteritems()}
147
- transfer = {quantity: base64.b64encode(data.astype(np.float32)) for quantity, data in TransferData.iteritems()}
146
+ real = {quantity: base64.b64encode(data.astype(np.float32)).decode() for quantity, data in Valuenew.items()}
147
+ transfer = {quantity: base64.b64encode(data.astype(np.float32)).decode() for quantity, data in TransferData.items()}
148
148
  self.write_message(
149
149
  json.dumps({
150
150
  'type': 'data',
@@ -166,9 +166,9 @@ class DataConnection(tornado.websocket.WebSocketHandler):
166
166
  extremastring = json.dumps({'type': 'extrema', 'extrema': extrema})
167
167
  datastring = json.dumps({
168
168
  'type': 'data',
169
- 'real': base64.b64encode(Value.astype(np.float32)),
169
+ 'real': base64.b64encode(Value.astype(np.float32)).decode(),
170
170
  'fourier': [],
171
- 'transfer': base64.b64encode(TransferData.astype(np.float32)),
171
+ 'transfer': base64.b64encode(TransferData.astype(np.float32)).decode(),
172
172
  'k': krange.tolist()
173
173
  })
174
174
  self.write_message(extremastring)
@@ -212,6 +212,7 @@ class DataConnection(tornado.websocket.WebSocketHandler):
212
212
 
213
213
  z_of_decoupling = self.calc.z_dec
214
214
  frame_of_decoupling = np.argmin(np.abs(z_of_decoupling - self.calc.redshift))
215
+ frame_of_decoupling = int(frame_of_decoupling) # this is np.int64 object, which json doesn't like
215
216
  if self.calc.redshift[frame_of_decoupling] > z_of_decoupling:
216
217
  frame_of_decoupling -= 1
217
218
  messages.append({
@@ -10,10 +10,6 @@
10
10
  #include "dei_rkck.h"
11
11
  #include "parser.h"
12
12
 
13
- /** list of possible types of spatial curvature */
14
-
15
- enum spatial_curvature {flat,open,closed};
16
-
17
13
  /** list of possible parametrisations of the DE equation of state */
18
14
 
19
15
  enum equation_of_state {CLP,EDE};
@@ -328,6 +324,7 @@ struct background
328
324
 
329
325
  ErrorMsg error_message; /**< zone for writing error messages */
330
326
 
327
+ short is_allocated; /**< flag is set to true if allocated */
331
328
  //@}
332
329
  };
333
330
 
@@ -15,7 +15,7 @@
15
15
  #ifndef __COMMON__
16
16
  #define __COMMON__
17
17
 
18
- #define _VERSION_ "v3.2.3"
18
+ #define _VERSION_ "v3.2.5"
19
19
 
20
20
  /* @cond INCLUDE_WITH_DOXYGEN */
21
21
 
@@ -181,6 +181,8 @@ struct distortions
181
181
 
182
182
  ErrorMsg error_message; /**< zone for writing error messages */
183
183
 
184
+ short is_allocated; /**< flag is set to true if allocated */
185
+
184
186
  //@}
185
187
 
186
188
  };
@@ -192,6 +192,8 @@ struct fourier {
192
192
 
193
193
  ErrorMsg error_message; /**< zone for writing error messages */
194
194
 
195
+ short is_allocated; /**< flag is set to true if allocated */
196
+
195
197
  //@}
196
198
  };
197
199
 
@@ -354,6 +356,7 @@ extern "C" {
354
356
 
355
357
  int fourier_get_k_list(
356
358
  struct precision *ppr,
359
+ struct primordial *ppm,
357
360
  struct perturbations * ppt,
358
361
  struct fourier * pfo
359
362
  );
@@ -134,6 +134,8 @@ struct harmonic {
134
134
 
135
135
  ErrorMsg error_message; /**< zone for writing error messages */
136
136
 
137
+ short is_allocated; /**< flag is set to true if allocated */
138
+
137
139
  //@}
138
140
  };
139
141
 
@@ -203,10 +203,11 @@
203
203
  * For shooting method: definition of the possible targets
204
204
  */
205
205
 
206
- enum target_names {theta_s, theta_s_100, Omega_dcdmdr, omega_dcdmdr, Omega_scf, Omega_ini_dcdm, omega_ini_dcdm, sigma8, S8};
206
+ enum target_names {theta_s, theta_s_100, Neff, Omega_dcdmdr, omega_dcdmdr, Omega_scf, Omega_ini_dcdm, omega_ini_dcdm, sigma8, S8};
207
207
  /* Important: Keep this number equal to the number of target_names (except sigma8, S8), and keep sigma8, S8 at the very end */
208
- #define _NUM_TARGETS_ 7
209
- /* Important: add one for each new target_names */
208
+ #define _NUM_TARGETS_ 8
209
+
210
+ /* Until which class stage is being computed? Pretty much fixed list, don't change. */
210
211
  enum computation_stage {cs_background, cs_thermodynamics, cs_perturbations, cs_primordial, cs_nonlinear, cs_transfer, cs_spectra};
211
212
 
212
213
  /**
@@ -89,6 +89,8 @@ struct lensing {
89
89
 
90
90
  ErrorMsg error_message; /**< zone for writing error messages */
91
91
 
92
+ short is_allocated; /**< flag is set to true if allocated */
93
+
92
94
  //@}
93
95
  };
94
96
 
@@ -100,6 +100,19 @@ extern "C" {
100
100
  int N_options,
101
101
  int* valid);
102
102
 
103
+ int parser_extend(struct file_content * pfc,
104
+ int N_extend,
105
+ ErrorMsg errmsg);
106
+
107
+ int parser_copy(struct file_content * pfc_source,
108
+ struct file_content * pfc_destination,
109
+ int index_start,
110
+ int index_end);
111
+
112
+ int parser_init_from_pfc(struct file_content * pfc_source,
113
+ struct file_content * pfc_destination,
114
+ ErrorMsg errmsg);
115
+
103
116
  #ifdef __cplusplus
104
117
  }
105
118
  #endif
@@ -198,6 +198,8 @@ struct perturbations
198
198
 
199
199
  enum possible_gauges gauge; /**< gauge in which to perform this calculation */
200
200
 
201
+ short has_matter_source_in_current_gauge; /**< whether to keep matter and baryon+CDM sources in current gauge, instead of automatic conversion to gauge-invariant variables */
202
+
201
203
  //@}
202
204
 
203
205
  /** @name - indices running on modes (scalar, vector, tensor) */
@@ -440,6 +442,8 @@ struct perturbations
440
442
 
441
443
  ErrorMsg error_message; /**< zone for writing error messages */
442
444
 
445
+ short is_allocated; /**< flag is set to true if allocated */
446
+
443
447
  //@}
444
448
 
445
449
  };
@@ -300,6 +300,8 @@ struct primordial {
300
300
 
301
301
  ErrorMsg error_message; /**< zone for writing error messages */
302
302
 
303
+ short is_allocated; /**< flag is set to true if allocated */
304
+
303
305
  };
304
306
 
305
307
  struct primordial_inflation_parameters_and_workspace {
@@ -328,6 +328,7 @@ struct thermodynamics
328
328
 
329
329
  ErrorMsg error_message; /**< zone for writing error messages */
330
330
 
331
+ short is_allocated; /**< flag is set to true if allocated */
331
332
  //@}
332
333
 
333
334
  };
@@ -5,8 +5,6 @@
5
5
 
6
6
  #include "fourier.h"
7
7
  #include "hyperspherical.h"
8
- #include <sys/shm.h>
9
- #include <sys/stat.h>
10
8
  #include "errno.h"
11
9
 
12
10
  /* macro: test if index_tt is in the range between index and index+num, while the flag is true */
@@ -207,6 +205,8 @@ struct transfer {
207
205
 
208
206
  ErrorMsg error_message; /**< zone for writing error messages */
209
207
 
208
+ short is_allocated; /**< flag is set to true if allocated */
209
+
210
210
  //@}
211
211
  };
212
212
 
@@ -675,7 +675,7 @@ extern "C" {
675
675
  int transfer_workspace_init(
676
676
  struct transfer * ptr,
677
677
  struct precision * ppr,
678
- struct transfer_workspace **ptw,
678
+ struct transfer_workspace *ptw,
679
679
  int perturbations_tau_size,
680
680
  int tau_size_max,
681
681
  double K,
@@ -53,6 +53,7 @@ cdef extern from "class.h":
53
53
  ErrorMsg error_message
54
54
 
55
55
  cdef struct background:
56
+ short is_allocated
56
57
  ErrorMsg error_message
57
58
  int bg_size
58
59
  int index_bg_ang_distance
@@ -106,6 +107,7 @@ cdef extern from "class.h":
106
107
  double tau_eq
107
108
 
108
109
  cdef struct thermodynamics:
110
+ short is_allocated
109
111
  ErrorMsg error_message
110
112
  int th_size
111
113
  int index_th_xe
@@ -141,6 +143,7 @@ cdef extern from "class.h":
141
143
  int tt_size
142
144
 
143
145
  cdef struct perturbations:
146
+ short is_allocated
144
147
  ErrorMsg error_message
145
148
  short has_scalars
146
149
  short has_vectors
@@ -277,9 +280,11 @@ cdef extern from "class.h":
277
280
  int ln_tau_size
278
281
 
279
282
  cdef struct transfer:
283
+ short is_allocated
280
284
  ErrorMsg error_message
281
285
 
282
286
  cdef struct primordial:
287
+ short is_allocated
283
288
  ErrorMsg error_message
284
289
  double k_pivot
285
290
  double A_s
@@ -311,6 +316,7 @@ cdef extern from "class.h":
311
316
  int lnk_size
312
317
 
313
318
  cdef struct harmonic:
319
+ short is_allocated
314
320
  ErrorMsg error_message
315
321
  int has_tt
316
322
  int has_te
@@ -350,6 +356,7 @@ cdef extern from "class.h":
350
356
  ErrorMsg error_message
351
357
 
352
358
  cdef struct distortions:
359
+ short is_allocated
353
360
  double * sd_parameter_table
354
361
  int index_type_g
355
362
  int index_type_mu
@@ -365,6 +372,7 @@ cdef extern from "class.h":
365
372
  ErrorMsg error_message
366
373
 
367
374
  cdef struct lensing:
375
+ short is_allocated
368
376
  int has_tt
369
377
  int has_ee
370
378
  int has_te
@@ -395,6 +403,7 @@ cdef extern from "class.h":
395
403
  ErrorMsg error_message
396
404
 
397
405
  cdef struct fourier:
406
+ short is_allocated
398
407
  short has_pk_matter
399
408
  int method
400
409
  int ic_size