clabtoolkit 0.3.3__tar.gz → 0.4.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (70) hide show
  1. clabtoolkit-0.4.0/HISTORY.rst +20 -0
  2. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/PKG-INFO +1 -1
  3. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/clabtoolkit/__init__.py +1 -1
  4. clabtoolkit-0.4.0/clabtoolkit/build_visualization_layout.py +1993 -0
  5. clabtoolkit-0.4.0/clabtoolkit/colorstools.py +3358 -0
  6. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/clabtoolkit/config/viz_views.json +18 -0
  7. clabtoolkit-0.4.0/clabtoolkit/config/viz_views_test.json +29 -0
  8. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/clabtoolkit/dwitools.py +3 -0
  9. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/clabtoolkit/freesurfertools.py +227 -57
  10. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/clabtoolkit/imagetools.py +586 -17
  11. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/clabtoolkit/misctools.py +735 -1706
  12. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/clabtoolkit/networktools.py +330 -2
  13. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/clabtoolkit/parcellationtools.py +82 -667
  14. clabtoolkit-0.4.0/clabtoolkit/pointstools.py +1630 -0
  15. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/clabtoolkit/segmentationtools.py +2 -4
  16. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/clabtoolkit/surfacetools.py +829 -144
  17. clabtoolkit-0.4.0/clabtoolkit/tracttools.py +2579 -0
  18. clabtoolkit-0.4.0/clabtoolkit/visualization_utils.py +2954 -0
  19. clabtoolkit-0.4.0/clabtoolkit/visualizationtools.py +1935 -0
  20. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/clabtoolkit.egg-info/PKG-INFO +1 -1
  21. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/clabtoolkit.egg-info/SOURCES.txt +9 -0
  22. clabtoolkit-0.4.0/docs/build/html/_static/file.png +0 -0
  23. clabtoolkit-0.4.0/docs/build/html/_static/minus.png +0 -0
  24. clabtoolkit-0.4.0/docs/build/html/_static/plus.png +0 -0
  25. clabtoolkit-0.4.0/docs/source/conf.py +203 -0
  26. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/docs/source/index.rst +15 -8
  27. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/docs/source/modules/freesurfertools.rst +24 -0
  28. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/docs/source/modules/imagetools.rst +37 -1
  29. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/docs/source/modules/surfacetools.rst +24 -0
  30. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/docs/source/modules/visualizationtools.rst +4 -4
  31. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/pyproject.toml +1 -1
  32. clabtoolkit-0.3.3/HISTORY.rst +0 -8
  33. clabtoolkit-0.3.3/clabtoolkit/visualizationtools.py +0 -5575
  34. clabtoolkit-0.3.3/docs/source/conf.py +0 -78
  35. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/AUTHORS.rst +0 -0
  36. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/CONTRIBUTING.rst +0 -0
  37. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/LICENSE +0 -0
  38. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/MANIFEST.in +0 -0
  39. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/README.rst +0 -0
  40. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/clabtoolkit/bidstools.py +0 -0
  41. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/clabtoolkit/config/bids.json +0 -0
  42. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/clabtoolkit/config/config.json +0 -0
  43. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/clabtoolkit/config/lobes.json +0 -0
  44. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/clabtoolkit/config/stats_mapping.json +0 -0
  45. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/clabtoolkit/connectivitytools.py +0 -0
  46. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/clabtoolkit/dicomtools.py +0 -0
  47. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/clabtoolkit/morphometrytools.py +0 -0
  48. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/clabtoolkit/pipelinetools.py +0 -0
  49. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/clabtoolkit/plottools.py +0 -0
  50. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/clabtoolkit/qcqatools.py +0 -0
  51. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/clabtoolkit.egg-info/dependency_links.txt +0 -0
  52. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/clabtoolkit.egg-info/requires.txt +0 -0
  53. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/clabtoolkit.egg-info/top_level.txt +0 -0
  54. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/docs/Makefile +0 -0
  55. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/docs/clabtoolkit.rst +0 -0
  56. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/docs/make.bat +0 -0
  57. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/docs/modules.rst +0 -0
  58. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/docs/source/modules/bidstools.rst +0 -0
  59. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/docs/source/modules/connectivitytools.rst +0 -0
  60. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/docs/source/modules/dicomtools.rst +0 -0
  61. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/docs/source/modules/dwitools.rst +0 -0
  62. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/docs/source/modules/misctools.rst +0 -0
  63. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/docs/source/modules/morphometrytools.rst +0 -0
  64. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/docs/source/modules/networktools.rst +0 -0
  65. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/docs/source/modules/parcellationtools.rst +0 -0
  66. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/docs/source/modules/pipelinetools.rst +0 -0
  67. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/docs/source/modules/plottools.rst +0 -0
  68. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/docs/source/modules/qcqatools.rst +0 -0
  69. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/docs/source/modules/segmentationtools.rst +0 -0
  70. {clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/setup.cfg +0 -0
clabtoolkit-0.4.0/HISTORY.rst ADDED
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+ =======
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+ History
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+ =======
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+
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+ 0.3.4 (2025-01-09)
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+ ------------------
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+
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+ * Enhanced documentation and ReadTheDocs configuration
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+ * Moved region growing method to imagetools module
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+ * Improved Sphinx autodoc configuration for better API documentation
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+ * Multiple improvements to surface visualization and plotting functionality
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+ * Added new morphometry and connectivity analysis tools
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+ * Enhanced BIDS dataset handling and entity management
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+ * Improved surface mesh operations and color mapping
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+ * Added network analysis tools and visualization capabilities
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+
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+ 0.3.1 (2025-05-22)
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+ ------------------
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+
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+ * Fourth release on PyPI.
{clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/PKG-INFO RENAMED
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  Metadata-Version: 2.4
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  Name: clabtoolkit
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- Version: 0.3.3
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+ Version: 0.4.0
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  Summary: A comprehensive toolkit for neuroimaging data processing and analysis
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  Author-email: Yasser Alemán-Gómez <yasseraleman@protonmail.com>
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  Maintainer-email: Yasser Alemán-Gómez <yasseraleman@protonmail.com>
{clabtoolkit-0.3.3 → clabtoolkit-0.4.0}/clabtoolkit/__init__.py RENAMED
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  __author__ = """Yasser Alemán-Gómez"""
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  __email__ = "yasseraleman@protonmail.com"
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- __version__ = "0.3.3"
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+ __version__ = "0.4.0"