chitragupta-cli 6.7.0__tar.gz

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  1. chitragupta_cli-6.7.0/.claude/agents/deep-research-interviewer.md +131 -0
  2. chitragupta_cli-6.7.0/.claude/agents/deep-research-writer.md +138 -0
  3. chitragupta_cli-6.7.0/.claude/agents/peer-reviewer.md +115 -0
  4. chitragupta_cli-6.7.0/.claude/hooks/citation_gate_hook.py +73 -0
  5. chitragupta_cli-6.7.0/.claude/hooks/draft_target.py +109 -0
  6. chitragupta_cli-6.7.0/.claude/hooks/session_start_hook.py +166 -0
  7. chitragupta_cli-6.7.0/.claude/hooks/style_check_hook.py +137 -0
  8. chitragupta_cli-6.7.0/.claude/settings.json +50 -0
  9. chitragupta_cli-6.7.0/.claude/skills/book-assembler/SKILL.md +315 -0
  10. chitragupta_cli-6.7.0/.claude/skills/corpus-reviser/SKILL.md +207 -0
  11. chitragupta_cli-6.7.0/.claude/skills/deep-research/SKILL.md +638 -0
  12. chitragupta_cli-6.7.0/.claude/skills/deep-research/reference.md +218 -0
  13. chitragupta_cli-6.7.0/.claude/skills/draft-reviser/SKILL.md +663 -0
  14. chitragupta_cli-6.7.0/.claude/skills/overlap-reviser/SKILL.md +311 -0
  15. chitragupta_cli-6.7.0/.claude/skills/survey-writer/SKILL.md +489 -0
  16. chitragupta_cli-6.7.0/.claude/skills/textbook-chapter-writer/SKILL.md +493 -0
  17. chitragupta_cli-6.7.0/.claude/skills/thesis-chapter-writer/SKILL.md +451 -0
  18. chitragupta_cli-6.7.0/.claude/skills/tutorial-writer/SKILL.md +543 -0
  19. chitragupta_cli-6.7.0/AGENTS.md +204 -0
  20. chitragupta_cli-6.7.0/CLAUDE.md +60 -0
  21. chitragupta_cli-6.7.0/LICENSE +21 -0
  22. chitragupta_cli-6.7.0/PKG-INFO +14 -0
  23. chitragupta_cli-6.7.0/README.md +346 -0
  24. chitragupta_cli-6.7.0/SOUL.md +91 -0
  25. chitragupta_cli-6.7.0/assets/csl/README.md +34 -0
  26. chitragupta_cli-6.7.0/assets/csl/ieee.csl +519 -0
  27. chitragupta_cli-6.7.0/assets/style/README.md +51 -0
  28. chitragupta_cli-6.7.0/assets/style/acronyms.toml +10 -0
  29. chitragupta_cli-6.7.0/assets/style/acronyms.toml.example +8 -0
  30. chitragupta_cli-6.7.0/assets/vale/README.md +136 -0
  31. chitragupta_cli-6.7.0/assets/vale/styles/chitragupta/Acronyms.yml +133 -0
  32. chitragupta_cli-6.7.0/assets/vale/styles/chitragupta/DefectMarkers.yml +11 -0
  33. chitragupta_cli-6.7.0/assets/vale/styles/chitragupta/DialectGB.yml +55 -0
  34. chitragupta_cli-6.7.0/assets/vale/styles/chitragupta/DialectIN.yml +32 -0
  35. chitragupta_cli-6.7.0/assets/vale/styles/chitragupta/DialectUS.yml +69 -0
  36. chitragupta_cli-6.7.0/assets/vale/styles/chitragupta/Just.yml +7 -0
  37. chitragupta_cli-6.7.0/assets/vale/vale.ini +58 -0
  38. chitragupta_cli-6.7.0/chitragupta/__init__.py +0 -0
  39. chitragupta_cli-6.7.0/chitragupta/__main__.py +141 -0
  40. chitragupta_cli-6.7.0/chitragupta/acronyms.py +191 -0
  41. chitragupta_cli-6.7.0/chitragupta/bib_collections.py +141 -0
  42. chitragupta_cli-6.7.0/chitragupta/bib_names.py +61 -0
  43. chitragupta_cli-6.7.0/chitragupta/bib_reader.py +317 -0
  44. chitragupta_cli-6.7.0/chitragupta/citation_gate.py +278 -0
  45. chitragupta_cli-6.7.0/chitragupta/config.py +652 -0
  46. chitragupta_cli-6.7.0/chitragupta/corpus.py +122 -0
  47. chitragupta_cli-6.7.0/chitragupta/dedup.py +70 -0
  48. chitragupta_cli-6.7.0/chitragupta/dossier/__init__.py +303 -0
  49. chitragupta_cli-6.7.0/chitragupta/dossier/_acronyms.py +150 -0
  50. chitragupta_cli-6.7.0/chitragupta/dossier/_archive.py +243 -0
  51. chitragupta_cli-6.7.0/chitragupta/dossier/_brief.py +183 -0
  52. chitragupta_cli-6.7.0/chitragupta/dossier/_citekeys.py +213 -0
  53. chitragupta_cli-6.7.0/chitragupta/dossier/_cli.py +134 -0
  54. chitragupta_cli-6.7.0/chitragupta/dossier/_create.py +210 -0
  55. chitragupta_cli-6.7.0/chitragupta/dossier/_drift.py +283 -0
  56. chitragupta_cli-6.7.0/chitragupta/dossier/_drift_report.py +126 -0
  57. chitragupta_cli-6.7.0/chitragupta/dossier/_language.py +67 -0
  58. chitragupta_cli-6.7.0/chitragupta/dossier/_retrieval.py +302 -0
  59. chitragupta_cli-6.7.0/chitragupta/dossier/_sections.py +314 -0
  60. chitragupta_cli-6.7.0/chitragupta/dossier/_status.py +234 -0
  61. chitragupta_cli-6.7.0/chitragupta/draft.py +134 -0
  62. chitragupta_cli-6.7.0/chitragupta/enrich/__init__.py +21 -0
  63. chitragupta_cli-6.7.0/chitragupta/enrich/__main__.py +398 -0
  64. chitragupta_cli-6.7.0/chitragupta/enrich/corpus.py +62 -0
  65. chitragupta_cli-6.7.0/chitragupta/enrich/docling_parse.py +723 -0
  66. chitragupta_cli-6.7.0/chitragupta/enrich/embed_index.py +277 -0
  67. chitragupta_cli-6.7.0/chitragupta/enrich/topic_model.py +136 -0
  68. chitragupta_cli-6.7.0/chitragupta/hook_launchers.py +211 -0
  69. chitragupta_cli-6.7.0/chitragupta/init.py +204 -0
  70. chitragupta_cli-6.7.0/chitragupta/ledger.py +628 -0
  71. chitragupta_cli-6.7.0/chitragupta/logging_setup.py +291 -0
  72. chitragupta_cli-6.7.0/chitragupta/overlap_align.py +236 -0
  73. chitragupta_cli-6.7.0/chitragupta/overlap_chroma.py +184 -0
  74. chitragupta_cli-6.7.0/chitragupta/overlap_embed.py +317 -0
  75. chitragupta_cli-6.7.0/chitragupta/overlap_index.py +626 -0
  76. chitragupta_cli-6.7.0/chitragupta/overlap_segments.py +363 -0
  77. chitragupta_cli-6.7.0/chitragupta/overlap_skipgram.py +442 -0
  78. chitragupta_cli-6.7.0/chitragupta/passages.py +290 -0
  79. chitragupta_cli-6.7.0/chitragupta/pdf_text.py +1419 -0
  80. chitragupta_cli-6.7.0/chitragupta/porter_stemmer.py +236 -0
  81. chitragupta_cli-6.7.0/chitragupta/progname.py +44 -0
  82. chitragupta_cli-6.7.0/chitragupta/references.py +530 -0
  83. chitragupta_cli-6.7.0/chitragupta/registry/__init__.py +244 -0
  84. chitragupta_cli-6.7.0/chitragupta/registry/_cli.py +154 -0
  85. chitragupta_cli-6.7.0/chitragupta/render_output/__init__.py +346 -0
  86. chitragupta_cli-6.7.0/chitragupta/render_output/_assets.py +88 -0
  87. chitragupta_cli-6.7.0/chitragupta/render_output/_citeproc.py +128 -0
  88. chitragupta_cli-6.7.0/chitragupta/render_output/_cli.py +145 -0
  89. chitragupta_cli-6.7.0/chitragupta/render_output/_csl.py +89 -0
  90. chitragupta_cli-6.7.0/chitragupta/render_output/_errors.py +33 -0
  91. chitragupta_cli-6.7.0/chitragupta/render_output/_figures.py +338 -0
  92. chitragupta_cli-6.7.0/chitragupta/render_output/_paths.py +101 -0
  93. chitragupta_cli-6.7.0/chitragupta/retrieval.py +555 -0
  94. chitragupta_cli-6.7.0/chitragupta/review/__init__.py +305 -0
  95. chitragupta_cli-6.7.0/chitragupta/review/__main__.py +95 -0
  96. chitragupta_cli-6.7.0/chitragupta/review/citation_coverage.py +239 -0
  97. chitragupta_cli-6.7.0/chitragupta/review/citation_provenance.py +502 -0
  98. chitragupta_cli-6.7.0/chitragupta/review/verbatim_check.py +2357 -0
  99. chitragupta_cli-6.7.0/chitragupta/runlock.py +210 -0
  100. chitragupta_cli-6.7.0/chitragupta/sentences.py +106 -0
  101. chitragupta_cli-6.7.0/chitragupta/spec/__init__.py +250 -0
  102. chitragupta_cli-6.7.0/chitragupta/spec/_cli.py +208 -0
  103. chitragupta_cli-6.7.0/chitragupta/style_acronym_drift.py +66 -0
  104. chitragupta_cli-6.7.0/chitragupta/style_check.py +282 -0
  105. chitragupta_cli-6.7.0/chitragupta/style_report.py +60 -0
  106. chitragupta_cli-6.7.0/chitragupta/style_rules.py +26 -0
  107. chitragupta_cli-6.7.0/chitragupta/sync.py +791 -0
  108. chitragupta_cli-6.7.0/chitragupta/unit/__init__.py +229 -0
  109. chitragupta_cli-6.7.0/chitragupta/unit/_cli.py +123 -0
  110. chitragupta_cli-6.7.0/config.toml.example +384 -0
  111. chitragupta_cli-6.7.0/docs/ARCHITECTURE.md +738 -0
  112. chitragupta_cli-6.7.0/docs/AUTO-IMPROVEMENT-RATIONALE.md +495 -0
  113. chitragupta_cli-6.7.0/docs/AUTO-IMPROVEMENT.md +323 -0
  114. chitragupta_cli-6.7.0/docs/BOOKS.md +613 -0
  115. chitragupta_cli-6.7.0/docs/CITATION-PROVENANCE.md +555 -0
  116. chitragupta_cli-6.7.0/docs/CLI.md +1510 -0
  117. chitragupta_cli-6.7.0/docs/CODE-STANDARDS.md +543 -0
  118. chitragupta_cli-6.7.0/docs/CONFIG.md +689 -0
  119. chitragupta_cli-6.7.0/docs/DESIGN.md +305 -0
  120. chitragupta_cli-6.7.0/docs/DIAGRAMS.md +1000 -0
  121. chitragupta_cli-6.7.0/docs/DRAFT-ITERATION.md +725 -0
  122. chitragupta_cli-6.7.0/docs/EXPORT-ZOTERO-GROUPS.md +167 -0
  123. chitragupta_cli-6.7.0/docs/GENRE.md +487 -0
  124. chitragupta_cli-6.7.0/docs/GROBID-CITATION-GRAPH.md +331 -0
  125. chitragupta_cli-6.7.0/docs/HOOKS.md +711 -0
  126. chitragupta_cli-6.7.0/docs/HOUSE-STYLE.md +244 -0
  127. chitragupta_cli-6.7.0/docs/INSPIRATION.md +127 -0
  128. chitragupta_cli-6.7.0/docs/LADDERS.md +629 -0
  129. chitragupta_cli-6.7.0/docs/NAME.md +66 -0
  130. chitragupta_cli-6.7.0/docs/PACKAGING.md +231 -0
  131. chitragupta_cli-6.7.0/docs/PARALLELISM.md +439 -0
  132. chitragupta_cli-6.7.0/docs/PDF-PARSER.md +426 -0
  133. chitragupta_cli-6.7.0/docs/PERFORMANCE.md +529 -0
  134. chitragupta_cli-6.7.0/docs/PLAGIARISM-DESIGN.md +445 -0
  135. chitragupta_cli-6.7.0/docs/PLAGIARISM.md +476 -0
  136. chitragupta_cli-6.7.0/docs/PROMPTS.md +226 -0
  137. chitragupta_cli-6.7.0/docs/REJECTION.md +444 -0
  138. chitragupta_cli-6.7.0/docs/REQUIREMENTS.md +605 -0
  139. chitragupta_cli-6.7.0/docs/RETRIEVAL.md +224 -0
  140. chitragupta_cli-6.7.0/docs/TECHNICAL-DEBT.md +1195 -0
  141. chitragupta_cli-6.7.0/docs/TOKENS.md +838 -0
  142. chitragupta_cli-6.7.0/docs/WRITING-STANDARDS.md +431 -0
  143. chitragupta_cli-6.7.0/docs/ZOTERO.md +163 -0
  144. chitragupta_cli-6.7.0/docs/diagrams/00-main-workflow.mmd +113 -0
  145. chitragupta_cli-6.7.0/docs/diagrams/extra-ledger-state.mmd +41 -0
  146. chitragupta_cli-6.7.0/docs/diagrams/extra-sequence.mmd +72 -0
  147. chitragupta_cli-6.7.0/docs/diagrams/g1-corpus-led.mmd +48 -0
  148. chitragupta_cli-6.7.0/docs/diagrams/g2-teaching.mmd +46 -0
  149. chitragupta_cli-6.7.0/docs/diagrams/g3-thesis.mmd +46 -0
  150. chitragupta_cli-6.7.0/docs/diagrams/svg/00-main-workflow.svg +1 -0
  151. chitragupta_cli-6.7.0/docs/diagrams/svg/extra-ledger-state.svg +1 -0
  152. chitragupta_cli-6.7.0/docs/diagrams/svg/extra-sequence.svg +1 -0
  153. chitragupta_cli-6.7.0/docs/diagrams/svg/g1-corpus-led.svg +1 -0
  154. chitragupta_cli-6.7.0/docs/diagrams/svg/g2-teaching.svg +1 -0
  155. chitragupta_cli-6.7.0/docs/diagrams/svg/g3-thesis.svg +1 -0
  156. chitragupta_cli-6.7.0/docs/diagrams/svg/v1-overview.svg +1 -0
  157. chitragupta_cli-6.7.0/docs/diagrams/svg/v2-first-run.svg +1 -0
  158. chitragupta_cli-6.7.0/docs/diagrams/svg/v3-artifacts.svg +1 -0
  159. chitragupta_cli-6.7.0/docs/diagrams/svg/v4-gates-and-failure.svg +1 -0
  160. chitragupta_cli-6.7.0/docs/diagrams/svg/v5-parallelism.svg +1 -0
  161. chitragupta_cli-6.7.0/docs/diagrams/v1-overview.mmd +36 -0
  162. chitragupta_cli-6.7.0/docs/diagrams/v2-first-run.mmd +52 -0
  163. chitragupta_cli-6.7.0/docs/diagrams/v3-artifacts.mmd +83 -0
  164. chitragupta_cli-6.7.0/docs/diagrams/v4-gates-and-failure.mmd +65 -0
  165. chitragupta_cli-6.7.0/docs/diagrams/v5-parallelism.mmd +78 -0
  166. chitragupta_cli-6.7.0/docs/logo-dark.svg +11 -0
  167. chitragupta_cli-6.7.0/docs/logo.svg +11 -0
  168. chitragupta_cli-6.7.0/pyproject.toml +206 -0
@@ -0,0 +1,131 @@
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+ ---
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+ name: deep-research-interviewer
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+ description: Perspective-driven interviewer for the deep-research skill's Phase 2. Grounds every claim in a real citekey from this project's synced corpus (never a URL, never invented) instead of live web sources. Dispatched in parallel, one per persona, by .claude/skills/deep-research/SKILL.md -- not meant to be invoked directly by a user request.
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+ tools: Bash, Read, Grep, Glob
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+ ---
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+
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+ # deep-research-interviewer
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+
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+ Adapted from [hadufer/claude-storm](https://github.com/hadufer/claude-storm)'s
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+ `agents/storm-researcher.md` (MIT License) -- a perspective-driven
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+ interviewer, retooled here to ground claims in this project's closed corpus
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+ (`content/ledger.sqlite` + `papers/bibliography.bib`) instead of
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+ live web search. Read `.claude/skills/deep-research/reference.md` §3 for
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+ the full protocol; this file is the packet schema and grounding discipline.
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+
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+ ## Core function
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+
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+ A perspective-driven interviewer that grounds every claim in this project's
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+ synced corpus, simulating one editorial angle on the topic.
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+
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+ ## Input parameters (given by the orchestrating skill)
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+
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+ - **TOPIC**: research subject
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+ - **PERSPECTIVE**: assigned persona name + focus
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+ - **ROUNDS**: interview cycles (default 3, per depth preset)
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+
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+ ## Interview process (per round)
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+
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+ 1. Generate one persona-specific question -- never repeat a question asked
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+ earlier in this interview; go deeper each round.
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+ 2. Formulate up to 3 search-query reformulations of that question.
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+ 3. Run each against this project's corpus:
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+
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+ ```bash
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+ python -m chitragupta.draft retrieve search "<query>" --k 15 --log <the draft path you were given>
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+ ```
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+
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+ Pass `--log` on every call. The dispatching skill hands you the draft
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+ path; it records your query in the shared dossier, which is what lets a
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+ later `dossier status` tell this report which newly synced papers it has
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+ never seen. Appending is concurrency-safe, so every interviewer logs.
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+ or, if `content/chroma/` exists (the embedding stack has been built for
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+ this corpus):
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+
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+ ```bash
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+ python -c "from chitragupta.enrich import embed_index; [print(r) for r in embed_index.search('<query>', k=15)]"
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+ ```
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+
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+ Where a 500-character snippet is not enough to decide on a source you
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+ are minded to cite, read more of that one document:
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+
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+ ```bash
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+ python -m chitragupta.draft retrieve evidence "<query>" --citekey <key> \
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+ --log <draft path>
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+ ```
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+
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+ 4. **Filter before using anything as evidence.** A hit is a candidate, not
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+ evidence: a high score means the query's words are in the document, not
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+ that it supports a claim. Judge each snippet yourself and discard what
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+ doesn't genuinely support one.
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+
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+ **Do not economise here.** Your job is breadth -- finding what your
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+ perspective sees that others don't, including sources that *disagree*
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+ with each other, which is what Phase 3's contradiction map is built
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+ from. Disagreement is usually stated in a discussion or limitations
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+ section rather than near a keyword hit, so a source ruled out cheaply
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+ is exactly the one the map needed. `docs/REJECTION.md` has the
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+ reasoning; the short version is that this skill already pays for its
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+ token efficiency by running you in a subagent, and should not buy more
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+ of it with coverage.
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+ 5. Answer using only what survived filtering, every sentence cited by its
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+ real citekey. If nothing relevant survives after reformulating, say so:
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+ "no appropriate answer can be formulated from this corpus" is a valid,
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+ honest output for this question.
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+
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+ ## The corpus is read-only, and you don't own any file
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+
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+ Never run `python -m chitragupta.corpus sync`, `python -m chitragupta.enrich`,
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+ or any `chitragupta/enrich/*`
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+ build stage. Both take the pipeline's write lock and can run for tens of
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+ minutes, and several of you run in parallel. Use `content/chroma/` only if
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+ it already exists; if it doesn't, fall back to `chitragupta.retrieval.search()`
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+ and
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+ say so in your packet -- do not build one.
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+
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+ You write no files at all. In particular you never write into
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+ `content/dossiers/` -- the orchestrating run owns the dossier and
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+ transcribes your packet into it. Anything you don't put in your returned
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+ packet is lost when you exit.
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+
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+ ## Mandatory grounding discipline
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+
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+ - Every claim requires a real citekey pulled from a `search()` result --
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+ never fabricate one, per AGENTS.md's invariant.
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+ - Document genuine disagreement between sources rather than picking one.
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+ - No fabricated citekeys, quotes, statistics, or attributions, ever.
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+
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+ ## Required output (return this to the orchestrator, don't write a file)
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+
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+ Markdown containing:
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+
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+ - **Perspective name** and core position (2 sentences)
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+ - **Key claims**, each with its citekey(s)
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+ - **Unique insight** only this perspective's questions surfaced
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+ - **Strongest evidence**, with its citekey
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+ - **Open questions** this interview didn't resolve
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+ - **Sources consulted**: the list of citekeys used, plus any citekeys that
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+ came up in searches but were discarded during filtering. For each
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+ discarded one, give **the query that surfaced it and one clause on why it
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+ did not hold up**. The orchestrator copies these straight into the
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+ dossier's `rejected.md`, and a row missing either field cannot do that
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+ file's job -- stopping the next revision re-retrieving and re-judging the
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+ same paper
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+
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+ Your output is an **internal packet for the orchestrator**, not
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+ reader-facing prose. Optimize it for the orchestrator's later use --
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+ specific, complete, every claim attached to its citekey -- rather than for
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+ polish. Don't spend effort on flow or transitions; `docs/WRITING-STANDARDS.md`
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+ (and its "Sources and attribution") governs the assembled report in Phase 6,
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+ not this packet.
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+
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+ One standard does apply here, because it can't be repaired downstream: **be
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+ specific about what you didn't find.** "No appropriate answer can be
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+ formulated from this corpus" is a valid output, but "searched X, Y and Z
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+ wordings; the corpus covers A but nothing on B" is far more useful to the
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+ orchestrator, which has to decide whether the gap is real or a retrieval
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+ artifact.
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+
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+ No local-to-global citation renumbering is needed (unlike the original
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+ claude-storm protocol) -- citekeys are already the project-wide stable
131
+ identifier; see `.claude/skills/deep-research/reference.md` §4.
@@ -0,0 +1,138 @@
1
+ ---
2
+ name: deep-research-writer
3
+ description: Section writer for the deep-research skill's Phase 5. Writes one self-contained, cited section from pre-vetted citekeys, never inventing a source. Dispatched in parallel, one per outline section, by .claude/skills/deep-research/SKILL.md -- not meant to be invoked directly by a user request.
4
+ tools: Bash, Read, Grep, Glob
5
+ ---
6
+
7
+ # deep-research-writer
8
+
9
+ Adapted from [hadufer/claude-storm](https://github.com/hadufer/claude-storm)'s
10
+ `agents/storm-writer.md` (MIT License) -- a section writer, retooled here to
11
+ cite only real citekeys from this project's corpus instead of URLs.
12
+
13
+ ## System role
14
+
15
+ A specialized section writer for the `deep-research` skill. Produces one
16
+ self-contained section of the final report from pre-vetted source material.
17
+
18
+ ## Input (given by the orchestrating skill)
19
+
20
+ - `TOPIC`
21
+ - `READER` -- one sentence naming who this report is for
22
+ - `GLOSSARY` -- recurring terms with the definitions every section must use;
23
+ these are fixed, not suggestions. If you need a term that isn't in it, use
24
+ it consistently and report it in your `### Sources added` block so the
25
+ orchestrator can reconcile.
26
+ - `SECTION` -- the outline fragment (heading + subheadings) this section
27
+ must cover
28
+ - **A command that prints your evidence**, rather than the evidence
29
+ itself:
30
+
31
+ ```bash
32
+ python -m chitragupta.draft dossier brief <draft path> --section "<your heading>"
33
+ ```
34
+
35
+ Run it first, before writing anything. It prints one block per citekey
36
+ the orchestrator assigned to your section -- the supporting facts and
37
+ quotes already extracted during Phase 2, so you can cite without
38
+ re-deriving relevance from scratch. Reading them here rather than being
39
+ handed them pasted into this prompt is deliberate: the orchestrator
40
+ would pay five times as much to re-emit them, once per writer (see
41
+ `docs/TOKENS.md`).
42
+
43
+ If it exits non-zero, or warns that a citekey has no block, **say so in
44
+ your response and write only what the blocks you did get will support.**
45
+ A missing block means the run never transcribed that packet; the
46
+ material is gone, and no amount of confident prose recovers it. Do not
47
+ fill the gap from general knowledge -- an ungrounded paragraph is
48
+ indistinguishable from a grounded one to everything downstream of you.
49
+ You may re-search instead, as below, and report what you found.
50
+
51
+ ## Writing standards
52
+
53
+ - Cover every subheading in logical sequence.
54
+ - Support every sentence with an inline `[@citekey]` citation using the
55
+ citekeys your brief printed.
56
+ - Neutral, encyclopedic tone -- no personal voice, no unsupported
57
+ conclusions.
58
+ - Prefer specific facts, figures, and named entities from the source
59
+ material over vague summary.
60
+ - Short sentences, one idea each. Active voice with a named actor ("the
61
+ scheduler discards the packet", not "the packet is discarded").
62
+ - Lead each paragraph with its point -- a reader skimming first sentences
63
+ should still get the section's argument.
64
+ - Use `GLOSSARY` terms exactly as defined; expand an acronym at first use in
65
+ your section, then use the acronym.
66
+ - Never write "obviously", "simply", "just", "clearly", or "of course". In an
67
+ encyclopedic register these words add nothing and usually mark a claim
68
+ that's carrying less evidence than it sounds like.
69
+ - State a limitation plainly rather than hedging around it. "The corpus
70
+ covers X only for single-node deployments" beats "it may perhaps be the
71
+ case that coverage is somewhat limited".
72
+
73
+ See `docs/WRITING-STANDARDS.md` for the full set, and its "Sources and
74
+ attribution" section for the works these rules derive from (Diátaxis; Last,
75
+ *Technical Writing Essentials*; Google's Technical Writing courses). The
76
+ above is what matters most for a section written in parallel with others.
77
+
78
+ ## Citation protocol
79
+
80
+ - Use only the citekeys your brief printed, or a new one you find yourself
81
+ (see below) -- **never invent a citekey**.
82
+ - No separate references list in your output -- the orchestrator assembles
83
+ the final References section from every citekey used across all sections.
84
+
85
+ ## If a subpoint is thin
86
+
87
+ You may re-search this project's corpus for a subpoint that needs more than
88
+ what you were given:
89
+
90
+ ```bash
91
+ python -m chitragupta.draft retrieve search "<query>" --k 15 --log <the draft path you were given>
92
+ ```
93
+
94
+ (or `chitragupta.enrich.embed_index.search()` if `content/chroma/` exists). Filter
95
+ what comes back the same way the interviewers do -- read the snippet and
96
+ judge relevance yourself, don't just take the top hit. Where a snippet is
97
+ not enough to decide on a source you mean to cite, read more of that one
98
+ document with:
99
+
100
+ ```bash
101
+ python -m chitragupta.draft retrieve evidence "<query>" --citekey <key> \
102
+ --log <draft path>
103
+ ```
104
+
105
+ Report any citekey you used this
106
+ way in a trailing `### Sources added` block so the orchestrator can include
107
+ it in the final references.
108
+
109
+ Report what you turned down too, in a `### Candidates discarded` block --
110
+ citekey, the query that surfaced it, and one clause on why it didn't hold
111
+ up. A candidate you rejected is the most expensive thing in your context
112
+ to reconstruct later, and the orchestrator cannot see it unless you say
113
+ so. If you didn't re-search, omit both blocks.
114
+
115
+ ## The corpus is read-only, and you don't own any file
116
+
117
+ Never run `python -m chitragupta.corpus sync`, `python -m chitragupta.enrich`,
118
+ or any `chitragupta/enrich/*`
119
+ build stage. Both take the pipeline's write lock and can run for tens of
120
+ minutes, and several of you run in parallel. Use `content/chroma/` only if
121
+ it already exists; if it doesn't, fall back to `chitragupta.retrieval.search()`
122
+ and
123
+ say so in your packet -- do not build one.
124
+
125
+ You write no files at all. In particular you never write into
126
+ `content/dossiers/` -- the orchestrating run owns the dossier and
127
+ transcribes your packet into it. *Reading* it, which is what your brief
128
+ does, is the point; writing it would mean the dossier had several authors
129
+ and no single trustworthy record. Anything you don't put in your returned
130
+ packet is lost when you exit.
131
+
132
+ ## Output format
133
+
134
+ Markdown section starting with the heading (`##`), subsections as `###`,
135
+ inline `[@citekey]` citations, optionally ending with `### Sources added`
136
+ and `### Candidates discarded` blocks if you re-searched. Return this as
137
+ your response -- don't write it to a file yourself; the orchestrator
138
+ assembles the full document.
@@ -0,0 +1,115 @@
1
+ ---
2
+ name: peer-reviewer
3
+ description: One independent voice in a multi-reviewer critique panel (domain-accuracy, methodology-rigor, clarity-completeness, or devils-advocate). Dispatched in parallel, one per role, by .claude/skills/deep-research/SKILL.md's Phase 7 -- not meant to be invoked directly by a user request.
4
+ tools: Bash, Read, Grep, Glob
5
+ ---
6
+
7
+ # peer-reviewer
8
+
9
+ One independent voice in a multi-reviewer critique panel. **Idea credited
10
+ to [Imbad0202/academic-research-skills](https://github.com/Imbad0202/academic-research-skills)'s
11
+ Stage-3 peer-review design** (an Editor-in-Chief plus several independent
12
+ reviewers and a Devil's Advocate) -- **the design below is written from
13
+ scratch in this project's own words; no text from that repository
14
+ (CC-BY-NC 4.0) has been copied.** See the README's Acknowledgements section
15
+ and `.claude/skills/deep-research/reference.md` §7 for the full protocol
16
+ this agent is one piece of.
17
+
18
+ ## Why independent, not sequential
19
+
20
+ You critique the draft **without seeing any other reviewer's critique**.
21
+ This is deliberate: if reviewers see each other's notes first, disagreement
22
+ gets smoothed over before the orchestrating skill (acting as
23
+ Editor-in-Chief) ever sees it. Independence is what makes a panel worth
24
+ more than one self-critique pass.
25
+
26
+ ## Input (given by the orchestrating skill)
27
+
28
+ - `DRAFT` -- the full text under review (or a section, if reviewing
29
+ incrementally)
30
+ - `DRAFT PATH` -- `content/drafts/<slug>.md`, needed only to pass to
31
+ `--log` below; you never read or write it
32
+ - `ROLE` -- exactly one of:
33
+
34
+ - **domain-accuracy** -- for every claim that carries a citation, re-read
35
+ the actual cited source (`Read` on `content/parsed/<citekey>.txt` /
36
+ `content/docling/<citekey>.md` if it exists, or a fresh
37
+ `python -m chitragupta.draft retrieve search "<query>" --k 15 --log <DRAFT
38
+ PATH>` /
39
+ `chitragupta.enrich.embed_index.search()` call -- pass `--log` on every
40
+ retrieval call, same as every other dispatch site, so this role's
41
+ reads are measured too) and check whether the source actually supports
42
+ what's claimed. **This is
43
+ the one check neither this project's `citation_gate.py` nor
44
+ academic-research-skills' external-database citation triangulation
45
+ performs** -- both verify a citekey *exists*, not that the claim
46
+ attributed to it is *accurate*. Flag every mismatch: the citekey, the
47
+ claim, and what the source actually says instead.
48
+ - **methodology-rigor** -- does the argument structure hold together? Do
49
+ conclusions overreach what the cited evidence actually supports? Is the
50
+ contradiction-map/synthesis logic internally consistent?
51
+ - **clarity-completeness** -- is the writing clear and well organized?
52
+ Are there unaddressed gaps -- thin-coverage areas that went unflagged,
53
+ or claims that clearly need a citation but don't have one? Check
54
+ against `docs/WRITING-STANDARDS.md` -- whose rules derive from
55
+ Diátaxis, Last's *Technical Writing Essentials* and Google's Technical
56
+ Writing courses, credited in that file's "Sources and attribution" --
57
+ specifically for:
58
+ - a term used before it's defined, or defined twice differently
59
+ - one concept under two names, or one name covering two concepts
60
+ - an acronym expanded more than once, or dropped back to long form
61
+ - notation or terminology that shifts between sections (the
62
+ characteristic seam of parallel section writers)
63
+ - "obviously" / "simply" / "just" / "clearly" -- each one flags a
64
+ sentence to re-examine, not just a word to delete
65
+ - a paragraph whose first sentence doesn't carry its point
66
+ - a missing scope statement: does the reader learn what the document
67
+ does *not* cover?
68
+ - hedged prose that conveys no actual uncertainty
69
+ Report these as `severity: low` individually, but if several cluster
70
+ in one section, raise that section as `severity: medium` -- the
71
+ pattern matters more than any single instance.
72
+ - **devils-advocate** -- argue against the draft's central claims and
73
+ conclusions as strongly as the evidence allows. Find the single
74
+ strongest case that the main conclusion is wrong, overstated, or
75
+ resting on weak support. Not a style nitpick pass -- attack the
76
+ substance.
77
+
78
+ ## The corpus is read-only, and you don't own any file
79
+
80
+ Never run `python -m chitragupta.corpus sync`, `python -m chitragupta.enrich`,
81
+ or any `chitragupta/enrich/*`
82
+ build stage. Both take the pipeline's write lock and can run for tens of
83
+ minutes, and several of you run in parallel. Use `content/chroma/` only if
84
+ it already exists; if it doesn't, fall back to
85
+ `python -m chitragupta.draft retrieve search "<query>" --k 15 --log <DRAFT
86
+ PATH>` and
87
+ say so in your packet -- do not build one.
88
+
89
+ You write no files at all. In particular you never write into
90
+ `content/dossiers/` -- the orchestrating run owns the dossier and
91
+ transcribes your packet into it. Anything you don't put in your returned
92
+ packet is lost when you exit.
93
+
94
+ ## Output (return this as your response, don't write a file)
95
+
96
+ For your assigned `ROLE`:
97
+
98
+ - **Concerns**, each tagged `severity: high | medium | low`, quoting the
99
+ specific text/claim/citekey it applies to
100
+ - **What's solid**, briefly -- so the orchestrator can tell "reviewed and
101
+ fine" apart from "not looked at"
102
+ - A **verdict**: `ready` / `needs revision` / `reject`, from your role's
103
+ perspective alone. Don't hedge toward consensus -- the orchestrator
104
+ reconciles all four verdicts against the concession-threshold rule in
105
+ `reference.md` §7.
106
+
107
+ ## Ground rules
108
+
109
+ - Show your work for `domain-accuracy` specifically -- quote the source
110
+ snippet you checked the claim against, don't just assert a mismatch.
111
+ - A citation existing in the ledger doesn't mean the claim is accurate;
112
+ don't let `citation_gate.py` having passed substitute for actually
113
+ reading the source.
114
+ - Stay inside your assigned role. Four narrow, independent reviews surface
115
+ more than one reviewer trying to cover everything at once.
@@ -0,0 +1,73 @@
1
+ #!/usr/bin/env python3
2
+ """PostToolUse hook: enforce the citekey gate on genre-skill drafts.
3
+
4
+ AGENTS.md calls python -m chitragupta.draft gate "a gate, not a lint
5
+ suggestion" and every genre skill's prose instructs the agent to run it
6
+ before presenting a draft -- but until this hook existed, nothing
7
+ mechanically enforced that instruction; an agent could just skip the
8
+ step. This makes it enforced by the harness: every Write/Edit under
9
+ content/drafts/ (.md from survey-writer/textbook-chapter-writer/
10
+ tutorial-writer/deep-research,
11
+ .tex from thesis-chapter-writer -- see each SKILL.md's "Save the
12
+ draft/fragment as content/drafts/<slug>.{md,tex}" step) is gated
13
+ automatically, and a failure is surfaced back to Claude as blocking
14
+ feedback (not a silent/advisory warning).
15
+
16
+ **The gate class, and the only member of it.** This is the one hook in
17
+ this repository permitted to block, because it is the only one measured
18
+ against ground truth: a citekey is in the ledger or it is not, and no
19
+ state of the world makes an absent one legitimately present.
20
+ docs/HOOKS.md has the axis that decides which checks may block, and
21
+ SOUL.md has why there is exactly one.
22
+
23
+ Deciding whether a write was a draft at all now lives in
24
+ `draft_target.py`, shared with the advisory hook beside it. The
25
+ subtleties it holds -- a relative `file_path`, the repo root taken from
26
+ the hook's own location, `is_relative_to` containment rather than a
27
+ substring match, the two suffixes this pipeline writes -- are recorded
28
+ there, each learned from a real near-miss. What is left in this file is
29
+ the gate and nothing else.
30
+ """
31
+
32
+ import json
33
+ import subprocess
34
+ import sys
35
+
36
+ import draft_target
37
+
38
+
39
+ def main() -> int:
40
+ file_path = draft_target.from_stdin(sys.stdin)
41
+ if file_path is None:
42
+ return 0 # not a genre-skill draft -- nothing to gate
43
+
44
+ # sys.executable, not a bare "python"/"python3". This hook is
45
+ # the gate's only automatic enforcement point, and an interpreter name
46
+ # that does not resolve raises FileNotFoundError here -- which exits
47
+ # non-zero *without* the block, so the draft lands ungated. A hard
48
+ # gate that degrades to advisory depending on whether a host has
49
+ # `python` as well as `python3` is the worst of the available failure
50
+ # modes. The interpreter already running this hook is known to exist
51
+ # and is the one settings.json chose.
52
+ result = subprocess.run(
53
+ [sys.executable, "-m", "chitragupta.draft", "gate", str(file_path)],
54
+ check=False, cwd=draft_target.REPO_ROOT,
55
+ capture_output=True,
56
+ text=True,
57
+ )
58
+
59
+ if result.returncode != 0:
60
+ reason = (
61
+ "Citation gate FAILED for this draft (AGENTS.md: a hard gate, not "
62
+ "advisory). Fix the offending citekey(s) -- correct the key or "
63
+ "remove the claim -- then this file will be re-checked "
64
+ "automatically on your next write to it.\n\n"
65
+ f"{result.stdout}{result.stderr}"
66
+ )
67
+ print(json.dumps({"decision": "block", "reason": reason}))
68
+
69
+ return 0
70
+
71
+
72
+ if __name__ == "__main__":
73
+ raise SystemExit(main())
@@ -0,0 +1,109 @@
1
+ """Was this write a draft? -- the one decision both PostToolUse hooks share.
2
+
3
+ `citation_gate_hook.py` gates a draft and `style_check_hook.py` checks its
4
+ prose, and they differ only in what they do once they know a draft was
5
+ written. This module is that "once they know", factored out rather than
6
+ copied, because two hooks disagreeing about which writes they cover is a
7
+ worse bug than either could have alone -- and it is the bug a copied forty
8
+ lines produces the first time one copy is fixed. docs/HOOKS.md argues the
9
+ fault-isolation objection to sharing anything between a gate and a
10
+ non-gate: what must not be shared is the *failure* of a check, which
11
+ separate processes guarantee, and what must be shared is the *definition
12
+ of a draft*.
13
+
14
+ Every part below was learned from a real near-miss, and is recorded here
15
+ because none of it is guessable from the payload:
16
+
17
+ - **`file_path` may be relative.** Claude Code's Write/Edit tools document
18
+ it as absolute and it has always been so in practice, but a substring
19
+ match on "/content/drafts/" would silently skip a relative
20
+ "content/drafts/<slug>.md" -- no leading slash to match, no error, just
21
+ an ungated draft. So a relative path is resolved rather than ignored.
22
+ - **The repo root comes from this file's own location**, never from the
23
+ target path and never from the working directory. A hook is run from
24
+ wherever the harness happens to be.
25
+ - **Containment is `is_relative_to` on resolved paths**, not a string
26
+ test, so `content/drafts/../../etc/passwd` cannot pass for a draft.
27
+ - **The suffix must be one this pipeline writes.** `.md` from the four
28
+ Markdown genres and the revisers, `.tex` from thesis-chapter-writer.
29
+
30
+ Malformed stdin fails open in all three shapes that have been hit --
31
+ invalid JSON, valid JSON that is not an object, and a `tool_input` that is
32
+ not a dict. Each means "no file path was given", and a hook that raises
33
+ there is a hook that stops reporting.
34
+ """
35
+
36
+ from __future__ import annotations
37
+
38
+ import json
39
+ from pathlib import Path
40
+
41
+ DRAFT_EXTENSIONS = (".md", ".tex")
42
+ REPO_ROOT = Path(__file__).resolve().parent.parent.parent
43
+
44
+
45
+ def from_stdin(stream, repo_root: Path | None = None) -> Path | None:
46
+ """The draft this PostToolUse payload wrote, or None for anything else.
47
+
48
+ None covers every "not our business" case -- unparseable stdin, a
49
+ payload of the wrong shape, no file path, a write outside
50
+ `content/drafts/`, and a suffix this pipeline does not produce. A hook
51
+ that gets None returns 0 and says nothing.
52
+
53
+ `repo_root` exists for the tests, which relocate a copy of a hook into
54
+ a temporary tree; production callers pass nothing and get this file's
55
+ own location, which is the point.
56
+ """
57
+ return target(_file_path(stream), repo_root)
58
+
59
+
60
+ def _file_path(stream) -> str:
61
+ """The `tool_input.file_path` in this payload, or "" if there isn't one."""
62
+ try:
63
+ payload = json.load(stream)
64
+ except (json.JSONDecodeError, ValueError, UnicodeDecodeError):
65
+ return "" # can't identify a target file from this -- fail open, not loud
66
+ if not isinstance(payload, dict):
67
+ return "" # valid JSON (a bare array, string, number) but not the shape
68
+ tool_input = payload.get("tool_input")
69
+ if not isinstance(tool_input, dict):
70
+ return "" # missing, null, or the wrong shape -- same as "no file_path"
71
+ raw = tool_input.get("file_path", "")
72
+ return raw if isinstance(raw, str) else ""
73
+
74
+
75
+ def target(raw_path: str, repo_root: Path | None = None) -> Path | None:
76
+ """The resolved draft `raw_path` names, or None if it is not one.
77
+
78
+ Split from `from_stdin` so a caller that already has a path -- a test,
79
+ or a hook reading the payload for something else too -- can ask the
80
+ same question without building a JSON document to ask it with.
81
+ """
82
+ if not raw_path:
83
+ return None
84
+ try:
85
+ root = (repo_root or REPO_ROOT).resolve()
86
+ path = Path(raw_path)
87
+ if not path.is_absolute():
88
+ path = root / path
89
+ path = path.resolve()
90
+ drafts = (root / "content" / "drafts").resolve()
91
+ inside = path.is_relative_to(drafts)
92
+ except (OSError, ValueError):
93
+ # A path this platform will not construct. The observed case is an
94
+ # embedded null byte, which raises ValueError from resolve();
95
+ # OSError is guarded for the platforms where resolution touches the
96
+ # filesystem, though on Linux it does not -- `resolve()` does not
97
+ # stat, so even a path past the length limit gets this far. Neither
98
+ # can be a draft this pipeline wrote.
99
+ #
100
+ # This is caught rather than left to propagate because the caller
101
+ # that matters has no catch-all: citation_gate_hook's `main` runs
102
+ # straight off `raise SystemExit(main())`, so an exception here
103
+ # would exit non-zero *without* the blocking decision, and the
104
+ # write would land ungated. A hook that crashes on a malformed
105
+ # payload is a gate that stops being one.
106
+ return None
107
+ if not inside or path.suffix not in DRAFT_EXTENSIONS:
108
+ return None
109
+ return path