chemrecon 0.1.1__tar.gz → 0.1.2__tar.gz

{chemrecon-0.1.1 → chemrecon-0.1.2}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: chemrecon
-Version: 0.1.1
+Version: 0.1.2
 Summary: The ChemRecon library for integration and exploration of interconnected biochemical databases.
 Keywords: bioinformatics
 Author: Casper Asbjørn Eriksen
@@ -31,7 +31,7 @@ Provides-Extra: docs
 Description-Content-Type: text/markdown
 
 # ChemRecon
-*v. 0.1.1*
+*v. 0.1.2*
 
 ChemRecon is a Python library and consolidated meta-database designed to simplify the integration and exploration of 
 biochemical data from a range of sources. 
@@ -77,7 +77,7 @@ See the [GraphViz Python package](https://pypi.org/project/graphviz/) for instru
 
 ## Documentation
 The documentation, including instructions on usage, tutorials, and complete description covering the types of entries
-and relations supported, is available on the [ChemRecon homepage](https://www.cheminf.imada.sdu.dk/chemrecon).
+and relations supported, is available on the [ChemRecon homepage](https://chemrecon.org).
 
 ## Usage
 The following is an example of a typical ChemRecon workflow, producing the graph seen above.

{chemrecon-0.1.1 → chemrecon-0.1.2}/README.md

@@ -1,5 +1,5 @@
 # ChemRecon
-*v. 0.1.1*
+*v. 0.1.2*
 
 ChemRecon is a Python library and consolidated meta-database designed to simplify the integration and exploration of 
 biochemical data from a range of sources. 
@@ -45,7 +45,7 @@ See the [GraphViz Python package](https://pypi.org/project/graphviz/) for instru
 
 ## Documentation
 The documentation, including instructions on usage, tutorials, and complete description covering the types of entries
-and relations supported, is available on the [ChemRecon homepage](https://www.cheminf.imada.sdu.dk/chemrecon).
+and relations supported, is available on the [ChemRecon homepage](https://chemrecon.org).
 
 ## Usage
 The following is an example of a typical ChemRecon workflow, producing the graph seen above.

{chemrecon-0.1.1 → chemrecon-0.1.2}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = 'chemrecon'
-version = "0.1.1"
+version = "0.1.2"
 description = 'The ChemRecon library for integration and exploration of interconnected biochemical databases.'
 authors = [
     {name = 'Casper Asbjørn Eriksen', email = 'casbjorn@imada.sdu.dk'}
@@ -33,7 +33,7 @@ classifiers = [
 
 #[project.urls]
 Homepage = 'https://chemrecon.org'
-Documentation = 'https://docs.chemrecon.org'
+Documentation = 'https://chemrecon.org'
 Repository = 'https://gitlab.com/casbjorn/chemrecon'
 #Changelog = ''
 

{chemrecon-0.1.1 → chemrecon-0.1.2}/src/chemrecon/__init__.py

@@ -1,7 +1,7 @@
 """ Defines metadata and the most general exports in the chemrecon.* namespace.
 """
 # Metadata
-__version__ = '0.1.1'  # Library version
+__version__ = '0.1.2'  # Library version
 __db_version__: list[str] = ['0.1.1']  # Compatible database versions
 
 

chemrecon-0.1.2/src/chemrecon/database/connection_params/chemrecon_dev_do.dbinfo

@@ -0,0 +1,5 @@
+chemrecon_db
+dev
+AVNS_W0F0IvTDcJuYpvIwz5N
+db.chemrecon.org
+25060

{chemrecon-0.1.1 → chemrecon-0.1.2}/src/chemrecon/database/connection_params/chemrecon_pub.dbinfo

@@ -1,5 +1,5 @@
 chemrecon_db
 public_user
 chemrecon_public_password
-130.225.164.152
-5432
+db.chemrecon.org
+25060

chemrecon-0.1.2/src/chemrecon/database/connection_params/chemrecon_pub_do.dbinfo

@@ -0,0 +1,5 @@
+chemrecon_db
+public_user
+chemrecon_public_password
+db.chemrecon.org
+25060

{chemrecon-0.1.1 → chemrecon-0.1.2}/src/chemrecon/scripts/initialize_database.py

@@ -143,14 +143,10 @@ def initialise_database(
                 public_group = sql.Identifier('public_group')
             ))
 
+            conn.commit()
+
             # Create users/roles
             # ----------------------------------------------------------------------------------------------------------
-            c.execute(sql.SQL(
-                'CREATE USER {dev_username} WITH PASSWORD {dev_password};'
-            ).format(
-                dev_username = sql.Identifier(db_user_dev),
-                dev_password = db_pass_dev,
-            ))
             c.execute(sql.SQL(
                 'CREATE USER {pub_username} WITH PASSWORD {pub_password} IN GROUP {public_group};'
             ).format(
@@ -159,6 +155,13 @@ def initialise_database(
                 public_group = sql.Identifier('public_group')
             ))
 
+            c.execute(sql.SQL(
+                'CREATE USER {dev_username} WITH PASSWORD {dev_password};'
+            ).format(
+                dev_username = sql.Identifier(db_user_dev),
+                dev_password = db_pass_dev,
+            ))
+
         except psycopg.errors.DuplicateObject as e:
             # Already exists, reset
             conn.commit()