chemparseplot 1.9.15__tar.gz → 1.9.16__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/PKG-INFO +1 -1
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/_version.py +2 -2
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/plot/test_neb_renderers.py +53 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/.gitignore +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/LICENSE +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/__init__.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/api.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/parse/__init__.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/parse/chemgp_hdf5.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/parse/chemgp_jsonl.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/parse/converter.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/parse/eon/__init__.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/parse/eon/_trajectory_common.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/parse/eon/con_io.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/parse/eon/dimer_trajectory.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/parse/eon/frame_series.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/parse/eon/gprd.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/parse/eon/min_trajectory.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/parse/eon/minimization.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/parse/eon/neb.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/parse/eon/saddle_search.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/parse/eon/stitch.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/parse/file_.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/parse/grammar/__init__.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/parse/grammar/_deps.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/parse/grammar/orca_text.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/parse/grammar/xyz.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/parse/neb_utils.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/parse/orca/__init__.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/parse/orca/_opi.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/parse/orca/geomscan.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/parse/orca/neb/__init__.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/parse/orca/neb/interp.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/parse/orca/neb/opi_parser.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/parse/patterns.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/parse/plumed.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/parse/projection.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/parse/sella/saddle_search.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/parse/trajectory/__init__.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/parse/trajectory/hdf5.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/parse/trajectory/neb.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/parse/types.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/plot/__init__.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/plot/chemgp.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/plot/geomscan.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/plot/neb.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/plot/optimization.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/plot/plumed.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/plot/structs.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/plot/theme.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/units.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/chemparseplot/util.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/pyproject.toml +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/readme.md +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/__init__.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/_optional_imports.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/conftest.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/fixtures/h2mol.xyz +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/fixtures/orca_energy_coords_snippet.out +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/fixtures_geomscan_snippet.txt +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/parse/__init__.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/parse/_con_fixtures.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/parse/grammar/__init__.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/parse/grammar/test_grammar_deps.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/parse/grammar/test_orca_text_grammar.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/parse/grammar/test_xyz_grammar.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/parse/orca/test_geomscan.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/parse/orca/test_interp.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/parse/test_chemgp_hdf5.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/parse/test_chemgp_jsonl_types.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/parse/test_con_io.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/parse/test_converter.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/parse/test_dimer_trajectory.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/parse/test_eon_neb_types.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/parse/test_eon_trajectory_common.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/parse/test_frame_series.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/parse/test_min_trajectory.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/parse/test_minimization_result.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/parse/test_neb_stitch.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/parse/test_neb_utils.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/parse/test_orca_public_api.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/parse/test_parser_types.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/parse/test_patterns.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/parse/test_plumed.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/parse/test_projection.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/parse/test_readcon_boundary.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/parse/test_saddle_results.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/parse/test_sella_saddle.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/parse/test_trajectory_hdf5.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/parse/test_trajectory_neb.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/plot/__init__.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/plot/test_chemgp_utils.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/plot/test_neb_helpers.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/plot/test_optimization.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/plot/test_orca_neb_payload.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/plot/test_projection_refactor.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/plot/test_strip_rendering.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/plot/test_structs_units.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/plot/test_surface_auto_thin.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/test_coverage_batch.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/test_full_coverage.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/test_public_api.py +0 -0
- {chemparseplot-1.9.15 → chemparseplot-1.9.16}/tests/tutorials/test_chemparseplot.py +0 -0
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Metadata-Version: 2.4
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Name: chemparseplot
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Version: 1.9.
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Version: 1.9.16
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Summary: Parsers and plotting tools for computational chemistry
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Project-URL: Documentation, https://chemparseplot.rgoswami.me
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Project-URL: Issues, https://github.com/HaoZeke/chemparseplot/issues
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@@ -18,7 +18,7 @@ version_tuple: tuple[int | str, ...]
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commit_id: str | None
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__commit_id__: str | None
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__version__ = version = '1.9.
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__version_tuple__ = version_tuple = (1, 9,
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__version__ = version = '1.9.16'
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__version_tuple__ = version_tuple = (1, 9, 16)
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__commit_id__ = commit_id = None
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@@ -91,3 +91,56 @@ class TestPlotStructureStripRendererParam:
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assert mock_render.call_count == len(atoms_list)
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plt.close("all")
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class TestXyzrenderCliApiParity:
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"""CLI and Python API must match for the same xyzrender version."""
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def test_cli_python_api_parity(self, water, tmp_path):
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import importlib.util
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import subprocess
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pytest.importorskip("xyzrender")
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cli = shutil.which("xyzrender")
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if cli is None:
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pytest.skip("xyzrender console script not on PATH")
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# same package as importable xyzrender
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import xyzrender
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# write shared geometry
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ase_write(str(xyz), water, format="xyz")
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subprocess.run(
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[
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cli,
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str(xyz),
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"-o",
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str(png_cli),
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"-S",
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"200",
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"--config",
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"paton",
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"--hy",
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"-t",
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],
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check=True,
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capture_output=True,
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)
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img_cli = plt.imread(png_cli)
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img_api = _render_xyzrender(water, canvas_size=200, config="paton")
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a = np.asarray(img_cli, dtype=float)
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b = np.asarray(img_api, dtype=float)
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a = a / 255.0
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b = b / 255.0
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a = np.concatenate([a, np.ones(a.shape[:2] + (1,))], axis=-1)
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b = np.concatenate([b, np.ones(b.shape[:2] + (1,))], axis=-1)
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np.testing.assert_allclose(a, b, atol=1e-5, rtol=0)
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