celltype-cli 0.1.0__tar.gz → 0.1.2__tar.gz

{celltype_cli-0.1.0 → celltype_cli-0.1.2}/.claude/settings.local.json

@@ -89,7 +89,8 @@
       "Bash(tail:*)",
       "Bash(grep FAILED\\\\|ERROR:*)",
       "Bash(echo not found under common names:*)",
-      "Bash(head:*)"
+      "Bash(head:*)",
+      "Bash(twine upload:*)"
     ]
   }
 }

{celltype_cli-0.1.0 → celltype_cli-0.1.2}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: celltype-cli
-Version: 0.1.0
+Version: 0.1.2
 Summary: CellType CLI — An autonomous agent for drug discovery research
 Author: CellType Inc.
 License-Expression: MIT

{celltype_cli-0.1.0 → celltype_cli-0.1.2}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
 
 [project]
 name = "celltype-cli"
-version = "0.1.0"
+version = "0.1.2"
 description = "CellType CLI — An autonomous agent for drug discovery research"
 readme = "README.md"
 license = "MIT"

{celltype_cli-0.1.0 → celltype_cli-0.1.2}/src/ct/cli.py

@@ -1110,14 +1110,15 @@ def case_study_run(
 
     llm_issue = cfg.llm_preflight_issue()
     if llm_issue:
-        console.print(
-            Panel(
-                f"[bold red]LLM is not configured[/bold red]\n\n{llm_issue}",
-                title="[red]Configuration Error[/red]",
-                border_style="red",
-            )
-        )
-        raise typer.Exit(code=2)
+        console.print("\n  [yellow]First-time setup required.[/yellow]\n")
+        setup_cmd(api_key=None)
+        cfg = Config.load()
+        if model:
+            cfg.set("llm.model", model)
+        llm_issue = cfg.llm_preflight_issue()
+        if llm_issue:
+            console.print(f"\n  [red]Setup incomplete:[/red] {llm_issue}")
+            raise typer.Exit(code=2)
 
     session = Session(config=cfg, verbose=verbose)
     case = CASE_STUDIES[case_id]
@@ -1204,17 +1205,15 @@ def run_query(query: str, context: dict, output: Optional[Path],
 
     llm_issue = cfg.llm_preflight_issue()
     if llm_issue:
-        console.print(
-            Panel(
-                (
-                    f"[bold red]LLM is not configured[/bold red]\n\n{llm_issue}\n\n"
-                    "Run `ct doctor` for a full readiness check."
-                ),
-                title="[red]Configuration Error[/red]",
-                border_style="red",
-            )
-        )
-        raise typer.Exit(code=2)
+        console.print("\n  [yellow]First-time setup required.[/yellow]\n")
+        setup_cmd(api_key=None)
+        cfg = Config.load()
+        if model:
+            cfg.set("llm.model", model)
+        llm_issue = cfg.llm_preflight_issue()
+        if llm_issue:
+            console.print(f"\n  [red]Setup incomplete:[/red] {llm_issue}")
+            raise typer.Exit(code=2)
 
     session = Session(config=cfg, verbose=verbose)
 
@@ -1387,18 +1386,14 @@ def run_interactive(context: dict, output: Optional[Path],
 
     llm_issue = cfg.llm_preflight_issue()
     if llm_issue:
-        console.print(
-            Panel(
-                (
-                    f"[bold red]LLM is not configured[/bold red]\n\n{llm_issue}\n\n"
-                    "Set your key/provider via `ct config set ...`, then run `ct` again.\n"
-                    "Tip: run `ct doctor` for a full readiness check."
-                ),
-                title="[red]Configuration Error[/red]",
-                border_style="red",
-            )
-        )
-        return
+        console.print("\n  [yellow]First-time setup required.[/yellow]\n")
+        setup_cmd(api_key=None)
+        # Reload config after setup
+        cfg = Config.load()
+        llm_issue = cfg.llm_preflight_issue()
+        if llm_issue:
+            console.print(f"\n  [red]Setup incomplete:[/red] {llm_issue}")
+            return
 
     print_banner()