celltype-cli 0.1.0__tar.gz

celltype_cli-0.1.0/.claude/commands/opsx/apply.md

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+---
+name: "OPSX: Apply"
+description: Implement tasks from an OpenSpec change (Experimental)
+category: Workflow
+tags: [workflow, artifacts, experimental]
+---
+
+Implement tasks from an OpenSpec change.
+
+**Input**: Optionally specify a change name (e.g., `/opsx:apply add-auth`). If omitted, check if it can be inferred from conversation context. If vague or ambiguous you MUST prompt for available changes.
+
+**Steps**
+
+1. **Select the change**
+
+   If a name is provided, use it. Otherwise:
+   - Infer from conversation context if the user mentioned a change
+   - Auto-select if only one active change exists
+   - If ambiguous, run `openspec list --json` to get available changes and use the **AskUserQuestion tool** to let the user select
+
+   Always announce: "Using change: <name>" and how to override (e.g., `/opsx:apply <other>`).
+
+2. **Check status to understand the schema**
+   ```bash
+   openspec status --change "<name>" --json
+   ```
+   Parse the JSON to understand:
+   - `schemaName`: The workflow being used (e.g., "spec-driven")
+   - Which artifact contains the tasks (typically "tasks" for spec-driven, check status for others)
+
+3. **Get apply instructions**
+
+   ```bash
+   openspec instructions apply --change "<name>" --json
+   ```
+
+   This returns:
+   - Context file paths (varies by schema)
+   - Progress (total, complete, remaining)
+   - Task list with status
+   - Dynamic instruction based on current state
+
+   **Handle states:**
+   - If `state: "blocked"` (missing artifacts): show message, suggest using `/opsx:continue`
+   - If `state: "all_done"`: congratulate, suggest archive
+   - Otherwise: proceed to implementation
+
+4. **Read context files**
+
+   Read the files listed in `contextFiles` from the apply instructions output.
+   The files depend on the schema being used:
+   - **spec-driven**: proposal, specs, design, tasks
+   - Other schemas: follow the contextFiles from CLI output
+
+5. **Show current progress**
+
+   Display:
+   - Schema being used
+   - Progress: "N/M tasks complete"
+   - Remaining tasks overview
+   - Dynamic instruction from CLI
+
+6. **Implement tasks (loop until done or blocked)**
+
+   For each pending task:
+   - Show which task is being worked on
+   - Make the code changes required
+   - Keep changes minimal and focused
+   - Mark task complete in the tasks file: `- [ ]` → `- [x]`
+   - Continue to next task
+
+   **Pause if:**
+   - Task is unclear → ask for clarification
+   - Implementation reveals a design issue → suggest updating artifacts
+   - Error or blocker encountered → report and wait for guidance
+   - User interrupts
+
+7. **On completion or pause, show status**
+
+   Display:
+   - Tasks completed this session
+   - Overall progress: "N/M tasks complete"
+   - If all done: suggest archive
+   - If paused: explain why and wait for guidance
+
+**Output During Implementation**
+
+```
+## Implementing: <change-name> (schema: <schema-name>)
+
+Working on task 3/7: <task description>
+[...implementation happening...]
+✓ Task complete
+
+Working on task 4/7: <task description>
+[...implementation happening...]
+✓ Task complete
+```
+
+**Output On Completion**
+
+```
+## Implementation Complete
+
+**Change:** <change-name>
+**Schema:** <schema-name>
+**Progress:** 7/7 tasks complete ✓
+
+### Completed This Session
+- [x] Task 1
+- [x] Task 2
+...
+
+All tasks complete! You can archive this change with `/opsx:archive`.
+```
+
+**Output On Pause (Issue Encountered)**
+
+```
+## Implementation Paused
+
+**Change:** <change-name>
+**Schema:** <schema-name>
+**Progress:** 4/7 tasks complete
+
+### Issue Encountered
+<description of the issue>
+
+**Options:**
+1. <option 1>
+2. <option 2>
+3. Other approach
+
+What would you like to do?
+```
+
+**Guardrails**
+- Keep going through tasks until done or blocked
+- Always read context files before starting (from the apply instructions output)
+- If task is ambiguous, pause and ask before implementing
+- If implementation reveals issues, pause and suggest artifact updates
+- Keep code changes minimal and scoped to each task
+- Update task checkbox immediately after completing each task
+- Pause on errors, blockers, or unclear requirements - don't guess
+- Use contextFiles from CLI output, don't assume specific file names
+
+**Fluid Workflow Integration**
+
+This skill supports the "actions on a change" model:
+
+- **Can be invoked anytime**: Before all artifacts are done (if tasks exist), after partial implementation, interleaved with other actions
+- **Allows artifact updates**: If implementation reveals design issues, suggest updating artifacts - not phase-locked, work fluidly

celltype_cli-0.1.0/.claude/commands/opsx/archive.md

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+---
+name: "OPSX: Archive"
+description: Archive a completed change in the experimental workflow
+category: Workflow
+tags: [workflow, archive, experimental]
+---
+
+Archive a completed change in the experimental workflow.
+
+**Input**: Optionally specify a change name after `/opsx:archive` (e.g., `/opsx:archive add-auth`). If omitted, check if it can be inferred from conversation context. If vague or ambiguous you MUST prompt for available changes.
+
+**Steps**
+
+1. **If no change name provided, prompt for selection**
+
+   Run `openspec list --json` to get available changes. Use the **AskUserQuestion tool** to let the user select.
+
+   Show only active changes (not already archived).
+   Include the schema used for each change if available.
+
+   **IMPORTANT**: Do NOT guess or auto-select a change. Always let the user choose.
+
+2. **Check artifact completion status**
+
+   Run `openspec status --change "<name>" --json` to check artifact completion.
+
+   Parse the JSON to understand:
+   - `schemaName`: The workflow being used
+   - `artifacts`: List of artifacts with their status (`done` or other)
+
+   **If any artifacts are not `done`:**
+   - Display warning listing incomplete artifacts
+   - Prompt user for confirmation to continue
+   - Proceed if user confirms
+
+3. **Check task completion status**
+
+   Read the tasks file (typically `tasks.md`) to check for incomplete tasks.
+
+   Count tasks marked with `- [ ]` (incomplete) vs `- [x]` (complete).
+
+   **If incomplete tasks found:**
+   - Display warning showing count of incomplete tasks
+   - Prompt user for confirmation to continue
+   - Proceed if user confirms
+
+   **If no tasks file exists:** Proceed without task-related warning.
+
+4. **Assess delta spec sync state**
+
+   Check for delta specs at `openspec/changes/<name>/specs/`. If none exist, proceed without sync prompt.
+
+   **If delta specs exist:**
+   - Compare each delta spec with its corresponding main spec at `openspec/specs/<capability>/spec.md`
+   - Determine what changes would be applied (adds, modifications, removals, renames)
+   - Show a combined summary before prompting
+
+   **Prompt options:**
+   - If changes needed: "Sync now (recommended)", "Archive without syncing"
+   - If already synced: "Archive now", "Sync anyway", "Cancel"
+
+   If user chooses sync, execute `/opsx:sync` logic. Proceed to archive regardless of choice.
+
+5. **Perform the archive**
+
+   Create the archive directory if it doesn't exist:
+   ```bash
+   mkdir -p openspec/changes/archive
+   ```
+
+   Generate target name using current date: `YYYY-MM-DD-<change-name>`
+
+   **Check if target already exists:**
+   - If yes: Fail with error, suggest renaming existing archive or using different date
+   - If no: Move the change directory to archive
+
+   ```bash
+   mv openspec/changes/<name> openspec/changes/archive/YYYY-MM-DD-<name>
+   ```
+
+6. **Display summary**
+
+   Show archive completion summary including:
+   - Change name
+   - Schema that was used
+   - Archive location
+   - Spec sync status (synced / sync skipped / no delta specs)
+   - Note about any warnings (incomplete artifacts/tasks)
+
+**Output On Success**
+
+```
+## Archive Complete
+
+**Change:** <change-name>
+**Schema:** <schema-name>
+**Archived to:** openspec/changes/archive/YYYY-MM-DD-<name>/
+**Specs:** ✓ Synced to main specs
+
+All artifacts complete. All tasks complete.
+```
+
+**Output On Success (No Delta Specs)**
+
+```
+## Archive Complete
+
+**Change:** <change-name>
+**Schema:** <schema-name>
+**Archived to:** openspec/changes/archive/YYYY-MM-DD-<name>/
+**Specs:** No delta specs
+
+All artifacts complete. All tasks complete.
+```
+
+**Output On Success With Warnings**
+
+```
+## Archive Complete (with warnings)
+
+**Change:** <change-name>
+**Schema:** <schema-name>
+**Archived to:** openspec/changes/archive/YYYY-MM-DD-<name>/
+**Specs:** Sync skipped (user chose to skip)
+
+**Warnings:**
+- Archived with 2 incomplete artifacts
+- Archived with 3 incomplete tasks
+- Delta spec sync was skipped (user chose to skip)
+
+Review the archive if this was not intentional.
+```
+
+**Output On Error (Archive Exists)**
+
+```
+## Archive Failed
+
+**Change:** <change-name>
+**Target:** openspec/changes/archive/YYYY-MM-DD-<name>/
+
+Target archive directory already exists.
+
+**Options:**
+1. Rename the existing archive
+2. Delete the existing archive if it's a duplicate
+3. Wait until a different date to archive
+```
+
+**Guardrails**
+- Always prompt for change selection if not provided
+- Use artifact graph (openspec status --json) for completion checking
+- Don't block archive on warnings - just inform and confirm
+- Preserve .openspec.yaml when moving to archive (it moves with the directory)
+- Show clear summary of what happened
+- If sync is requested, use /opsx:sync approach (agent-driven)
+- If delta specs exist, always run the sync assessment and show the combined summary before prompting

celltype_cli-0.1.0/.claude/commands/opsx/bulk-archive.md

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+---
+name: "OPSX: Bulk Archive"
+description: Archive multiple completed changes at once
+category: Workflow
+tags: [workflow, archive, experimental, bulk]
+---
+
+Archive multiple completed changes in a single operation.
+
+This skill allows you to batch-archive changes, handling spec conflicts intelligently by checking the codebase to determine what's actually implemented.
+
+**Input**: None required (prompts for selection)
+
+**Steps**
+
+1. **Get active changes**
+
+   Run `openspec list --json` to get all active changes.
+
+   If no active changes exist, inform user and stop.
+
+2. **Prompt for change selection**
+
+   Use **AskUserQuestion tool** with multi-select to let user choose changes:
+   - Show each change with its schema
+   - Include an option for "All changes"
+   - Allow any number of selections (1+ works, 2+ is the typical use case)
+
+   **IMPORTANT**: Do NOT auto-select. Always let the user choose.
+
+3. **Batch validation - gather status for all selected changes**
+
+   For each selected change, collect:
+
+   a. **Artifact status** - Run `openspec status --change "<name>" --json`
+      - Parse `schemaName` and `artifacts` list
+      - Note which artifacts are `done` vs other states
+
+   b. **Task completion** - Read `openspec/changes/<name>/tasks.md`
+      - Count `- [ ]` (incomplete) vs `- [x]` (complete)
+      - If no tasks file exists, note as "No tasks"
+
+   c. **Delta specs** - Check `openspec/changes/<name>/specs/` directory
+      - List which capability specs exist
+      - For each, extract requirement names (lines matching `### Requirement: <name>`)
+
+4. **Detect spec conflicts**
+
+   Build a map of `capability -> [changes that touch it]`:
+
+   ```
+   auth -> [change-a, change-b]  <- CONFLICT (2+ changes)
+   api  -> [change-c]            <- OK (only 1 change)
+   ```
+
+   A conflict exists when 2+ selected changes have delta specs for the same capability.
+
+5. **Resolve conflicts agentically**
+
+   **For each conflict**, investigate the codebase:
+
+   a. **Read the delta specs** from each conflicting change to understand what each claims to add/modify
+
+   b. **Search the codebase** for implementation evidence:
+      - Look for code implementing requirements from each delta spec
+      - Check for related files, functions, or tests
+
+   c. **Determine resolution**:
+      - If only one change is actually implemented -> sync that one's specs
+      - If both implemented -> apply in chronological order (older first, newer overwrites)
+      - If neither implemented -> skip spec sync, warn user
+
+   d. **Record resolution** for each conflict:
+      - Which change's specs to apply
+      - In what order (if both)
+      - Rationale (what was found in codebase)
+
+6. **Show consolidated status table**
+
+   Display a table summarizing all changes:
+
+   ```
+   | Change               | Artifacts | Tasks | Specs   | Conflicts | Status |
+   |---------------------|-----------|-------|---------|-----------|--------|
+   | schema-management   | Done      | 5/5   | 2 delta | None      | Ready  |
+   | project-config      | Done      | 3/3   | 1 delta | None      | Ready  |
+   | add-oauth           | Done      | 4/4   | 1 delta | auth (!)  | Ready* |
+   | add-verify-skill    | 1 left    | 2/5   | None    | None      | Warn   |
+   ```
+
+   For conflicts, show the resolution:
+   ```
+   * Conflict resolution:
+     - auth spec: Will apply add-oauth then add-jwt (both implemented, chronological order)
+   ```
+
+   For incomplete changes, show warnings:
+   ```
+   Warnings:
+   - add-verify-skill: 1 incomplete artifact, 3 incomplete tasks
+   ```
+
+7. **Confirm batch operation**
+
+   Use **AskUserQuestion tool** with a single confirmation:
+
+   - "Archive N changes?" with options based on status
+   - Options might include:
+     - "Archive all N changes"
+     - "Archive only N ready changes (skip incomplete)"
+     - "Cancel"
+
+   If there are incomplete changes, make clear they'll be archived with warnings.
+
+8. **Execute archive for each confirmed change**
+
+   Process changes in the determined order (respecting conflict resolution):
+
+   a. **Sync specs** if delta specs exist:
+      - Use the openspec-sync-specs approach (agent-driven intelligent merge)
+      - For conflicts, apply in resolved order
+      - Track if sync was done
+
+   b. **Perform the archive**:
+      ```bash
+      mkdir -p openspec/changes/archive
+      mv openspec/changes/<name> openspec/changes/archive/YYYY-MM-DD-<name>
+      ```
+
+   c. **Track outcome** for each change:
+      - Success: archived successfully
+      - Failed: error during archive (record error)
+      - Skipped: user chose not to archive (if applicable)
+
+9. **Display summary**
+
+   Show final results:
+
+   ```
+   ## Bulk Archive Complete
+
+   Archived 3 changes:
+   - schema-management-cli -> archive/2026-01-19-schema-management-cli/
+   - project-config -> archive/2026-01-19-project-config/
+   - add-oauth -> archive/2026-01-19-add-oauth/
+
+   Skipped 1 change:
+   - add-verify-skill (user chose not to archive incomplete)
+
+   Spec sync summary:
+   - 4 delta specs synced to main specs
+   - 1 conflict resolved (auth: applied both in chronological order)
+   ```
+
+   If any failures:
+   ```
+   Failed 1 change:
+   - some-change: Archive directory already exists
+   ```
+
+**Conflict Resolution Examples**
+
+Example 1: Only one implemented
+```
+Conflict: specs/auth/spec.md touched by [add-oauth, add-jwt]
+
+Checking add-oauth:
+- Delta adds "OAuth Provider Integration" requirement
+- Searching codebase... found src/auth/oauth.ts implementing OAuth flow
+
+Checking add-jwt:
+- Delta adds "JWT Token Handling" requirement
+- Searching codebase... no JWT implementation found
+
+Resolution: Only add-oauth is implemented. Will sync add-oauth specs only.
+```
+
+Example 2: Both implemented
+```
+Conflict: specs/api/spec.md touched by [add-rest-api, add-graphql]
+
+Checking add-rest-api (created 2026-01-10):
+- Delta adds "REST Endpoints" requirement
+- Searching codebase... found src/api/rest.ts
+
+Checking add-graphql (created 2026-01-15):
+- Delta adds "GraphQL Schema" requirement
+- Searching codebase... found src/api/graphql.ts
+
+Resolution: Both implemented. Will apply add-rest-api specs first,
+then add-graphql specs (chronological order, newer takes precedence).
+```
+
+**Output On Success**
+
+```
+## Bulk Archive Complete
+
+Archived N changes:
+- <change-1> -> archive/YYYY-MM-DD-<change-1>/
+- <change-2> -> archive/YYYY-MM-DD-<change-2>/
+
+Spec sync summary:
+- N delta specs synced to main specs
+- No conflicts (or: M conflicts resolved)
+```
+
+**Output On Partial Success**
+
+```
+## Bulk Archive Complete (partial)
+
+Archived N changes:
+- <change-1> -> archive/YYYY-MM-DD-<change-1>/
+
+Skipped M changes:
+- <change-2> (user chose not to archive incomplete)
+
+Failed K changes:
+- <change-3>: Archive directory already exists
+```
+
+**Output When No Changes**
+
+```
+## No Changes to Archive
+
+No active changes found. Use `/opsx:new` to create a new change.
+```
+
+**Guardrails**
+- Allow any number of changes (1+ is fine, 2+ is the typical use case)
+- Always prompt for selection, never auto-select
+- Detect spec conflicts early and resolve by checking codebase
+- When both changes are implemented, apply specs in chronological order
+- Skip spec sync only when implementation is missing (warn user)
+- Show clear per-change status before confirming
+- Use single confirmation for entire batch
+- Track and report all outcomes (success/skip/fail)
+- Preserve .openspec.yaml when moving to archive
+- Archive directory target uses current date: YYYY-MM-DD-<name>
+- If archive target exists, fail that change but continue with others

celltype_cli-0.1.0/.claude/commands/opsx/continue.md

@@ -0,0 +1,114 @@
+---
+name: "OPSX: Continue"
+description: Continue working on a change - create the next artifact (Experimental)
+category: Workflow
+tags: [workflow, artifacts, experimental]
+---
+
+Continue working on a change by creating the next artifact.
+
+**Input**: Optionally specify a change name after `/opsx:continue` (e.g., `/opsx:continue add-auth`). If omitted, check if it can be inferred from conversation context. If vague or ambiguous you MUST prompt for available changes.
+
+**Steps**
+
+1. **If no change name provided, prompt for selection**
+
+   Run `openspec list --json` to get available changes sorted by most recently modified. Then use the **AskUserQuestion tool** to let the user select which change to work on.
+
+   Present the top 3-4 most recently modified changes as options, showing:
+   - Change name
+   - Schema (from `schema` field if present, otherwise "spec-driven")
+   - Status (e.g., "0/5 tasks", "complete", "no tasks")
+   - How recently it was modified (from `lastModified` field)
+
+   Mark the most recently modified change as "(Recommended)" since it's likely what the user wants to continue.
+
+   **IMPORTANT**: Do NOT guess or auto-select a change. Always let the user choose.
+
+2. **Check current status**
+   ```bash
+   openspec status --change "<name>" --json
+   ```
+   Parse the JSON to understand current state. The response includes:
+   - `schemaName`: The workflow schema being used (e.g., "spec-driven")
+   - `artifacts`: Array of artifacts with their status ("done", "ready", "blocked")
+   - `isComplete`: Boolean indicating if all artifacts are complete
+
+3. **Act based on status**:
+
+   ---
+
+   **If all artifacts are complete (`isComplete: true`)**:
+   - Congratulate the user
+   - Show final status including the schema used
+   - Suggest: "All artifacts created! You can now implement this change with `/opsx:apply` or archive it with `/opsx:archive`."
+   - STOP
+
+   ---
+
+   **If artifacts are ready to create** (status shows artifacts with `status: "ready"`):
+   - Pick the FIRST artifact with `status: "ready"` from the status output
+   - Get its instructions:
+     ```bash
+     openspec instructions <artifact-id> --change "<name>" --json
+     ```
+   - Parse the JSON. The key fields are:
+     - `context`: Project background (constraints for you - do NOT include in output)
+     - `rules`: Artifact-specific rules (constraints for you - do NOT include in output)
+     - `template`: The structure to use for your output file
+     - `instruction`: Schema-specific guidance
+     - `outputPath`: Where to write the artifact
+     - `dependencies`: Completed artifacts to read for context
+   - **Create the artifact file**:
+     - Read any completed dependency files for context
+     - Use `template` as the structure - fill in its sections
+     - Apply `context` and `rules` as constraints when writing - but do NOT copy them into the file
+     - Write to the output path specified in instructions
+   - Show what was created and what's now unlocked
+   - STOP after creating ONE artifact
+
+   ---
+
+   **If no artifacts are ready (all blocked)**:
+   - This shouldn't happen with a valid schema
+   - Show status and suggest checking for issues
+
+4. **After creating an artifact, show progress**
+   ```bash
+   openspec status --change "<name>"
+   ```
+
+**Output**
+
+After each invocation, show:
+- Which artifact was created
+- Schema workflow being used
+- Current progress (N/M complete)
+- What artifacts are now unlocked
+- Prompt: "Run `/opsx:continue` to create the next artifact"
+
+**Artifact Creation Guidelines**
+
+The artifact types and their purpose depend on the schema. Use the `instruction` field from the instructions output to understand what to create.
+
+Common artifact patterns:
+
+**spec-driven schema** (proposal → specs → design → tasks):
+- **proposal.md**: Ask user about the change if not clear. Fill in Why, What Changes, Capabilities, Impact.
+  - The Capabilities section is critical - each capability listed will need a spec file.
+- **specs/<capability>/spec.md**: Create one spec per capability listed in the proposal's Capabilities section (use the capability name, not the change name).
+- **design.md**: Document technical decisions, architecture, and implementation approach.
+- **tasks.md**: Break down implementation into checkboxed tasks.
+
+For other schemas, follow the `instruction` field from the CLI output.
+
+**Guardrails**
+- Create ONE artifact per invocation
+- Always read dependency artifacts before creating a new one
+- Never skip artifacts or create out of order
+- If context is unclear, ask the user before creating
+- Verify the artifact file exists after writing before marking progress
+- Use the schema's artifact sequence, don't assume specific artifact names
+- **IMPORTANT**: `context` and `rules` are constraints for YOU, not content for the file
+  - Do NOT copy `<context>`, `<rules>`, `<project_context>` blocks into the artifact
+  - These guide what you write, but should never appear in the output