cellpycore 0.2.1__tar.gz → 0.2.3__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (254) hide show
  1. cellpycore-0.2.3/.gitattributes +14 -0
  2. cellpycore-0.2.3/.issueflows/03-solved-issues/issue136_original.md +60 -0
  3. cellpycore-0.2.3/.issueflows/03-solved-issues/issue136_plan.md +87 -0
  4. cellpycore-0.2.3/.issueflows/03-solved-issues/issue136_status.md +18 -0
  5. cellpycore-0.2.3/.issueflows/03-solved-issues/issue139_original.md +61 -0
  6. cellpycore-0.2.3/.issueflows/03-solved-issues/issue139_plan.md +119 -0
  7. cellpycore-0.2.3/.issueflows/03-solved-issues/issue139_status.md +18 -0
  8. cellpycore-0.2.3/.issueflows/04-designs-and-guides/legacy-bridge-test-id.md +15 -0
  9. cellpycore-0.2.3/.issueflows/04-designs-and-guides/legacy-raw-energy-mapping.md +24 -0
  10. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/04-designs-and-guides/this-project.md +10 -0
  11. {cellpycore-0.2.1 → cellpycore-0.2.3}/HISTORY.md +16 -0
  12. {cellpycore-0.2.1 → cellpycore-0.2.3}/PKG-INFO +1 -1
  13. {cellpycore-0.2.1 → cellpycore-0.2.3}/graphify-out/.graphify_labels.json +28 -2
  14. {cellpycore-0.2.1 → cellpycore-0.2.3}/graphify-out/GRAPH_REPORT.md +277 -176
  15. cellpycore-0.2.3/graphify-out/graph.html +305 -0
  16. {cellpycore-0.2.1 → cellpycore-0.2.3}/graphify-out/graph.json +10799 -5012
  17. {cellpycore-0.2.1 → cellpycore-0.2.3}/graphify-out/manifest.json +66 -38
  18. {cellpycore-0.2.1 → cellpycore-0.2.3}/pyproject.toml +1 -1
  19. {cellpycore-0.2.1 → cellpycore-0.2.3}/src/cellpycore/cell_core.py +23 -3
  20. {cellpycore-0.2.1 → cellpycore-0.2.3}/src/cellpycore/legacy/headers.py +2 -0
  21. {cellpycore-0.2.1 → cellpycore-0.2.3}/src/cellpycore/legacy/mapping.py +14 -14
  22. {cellpycore-0.2.1 → cellpycore-0.2.3}/src/cellpycore/merge.py +28 -1
  23. {cellpycore-0.2.1 → cellpycore-0.2.3}/uv.lock +1 -1
  24. cellpycore-0.2.1/graphify-out/graph.html +0 -305
  25. {cellpycore-0.2.1 → cellpycore-0.2.3}/.aliases +0 -0
  26. {cellpycore-0.2.1 → cellpycore-0.2.3}/.cursor/rules/cellpy-core-migration.mdc +0 -0
  27. {cellpycore-0.2.1 → cellpycore-0.2.3}/.cursor/rules/graphify.mdc +0 -0
  28. {cellpycore-0.2.1 → cellpycore-0.2.3}/.cursor/rules/issueflow-rules.mdc +0 -0
  29. {cellpycore-0.2.1 → cellpycore-0.2.3}/.cursor/rules/kiss.mdc +0 -0
  30. {cellpycore-0.2.1 → cellpycore-0.2.3}/.cursor/rules/this-project.mdc +0 -0
  31. {cellpycore-0.2.1 → cellpycore-0.2.3}/.cursor/skills/caveman/SKILL.md +0 -0
  32. {cellpycore-0.2.1 → cellpycore-0.2.3}/.cursor/skills/grill-me/SKILL.md +0 -0
  33. {cellpycore-0.2.1 → cellpycore-0.2.3}/.cursor/skills/iflow/SKILL.md +0 -0
  34. {cellpycore-0.2.1 → cellpycore-0.2.3}/.cursor/skills/iflow-archive/SKILL.md +0 -0
  35. {cellpycore-0.2.1 → cellpycore-0.2.3}/.cursor/skills/iflow-cleanup/SKILL.md +0 -0
  36. {cellpycore-0.2.1 → cellpycore-0.2.3}/.cursor/skills/iflow-close/SKILL.md +0 -0
  37. {cellpycore-0.2.1 → cellpycore-0.2.3}/.cursor/skills/iflow-comments/SKILL.md +0 -0
  38. {cellpycore-0.2.1 → cellpycore-0.2.3}/.cursor/skills/iflow-cycle/SKILL.md +0 -0
  39. {cellpycore-0.2.1 → cellpycore-0.2.3}/.cursor/skills/iflow-epic/SKILL.md +0 -0
  40. {cellpycore-0.2.1 → cellpycore-0.2.3}/.cursor/skills/iflow-fix/SKILL.md +0 -0
  41. {cellpycore-0.2.1 → cellpycore-0.2.3}/.cursor/skills/iflow-graphify/SKILL.md +0 -0
  42. {cellpycore-0.2.1 → cellpycore-0.2.3}/.cursor/skills/iflow-history-update/SKILL.md +0 -0
  43. {cellpycore-0.2.1 → cellpycore-0.2.3}/.cursor/skills/iflow-init/SKILL.md +0 -0
  44. {cellpycore-0.2.1 → cellpycore-0.2.3}/.cursor/skills/iflow-pause/SKILL.md +0 -0
  45. {cellpycore-0.2.1 → cellpycore-0.2.3}/.cursor/skills/iflow-pick/SKILL.md +0 -0
  46. {cellpycore-0.2.1 → cellpycore-0.2.3}/.cursor/skills/iflow-plan/SKILL.md +0 -0
  47. {cellpycore-0.2.1 → cellpycore-0.2.3}/.cursor/skills/iflow-start/SKILL.md +0 -0
  48. {cellpycore-0.2.1 → cellpycore-0.2.3}/.cursor/skills/iflow-status/SKILL.md +0 -0
  49. {cellpycore-0.2.1 → cellpycore-0.2.3}/.cursor/skills/iflow-version-bump/SKILL.md +0 -0
  50. {cellpycore-0.2.1 → cellpycore-0.2.3}/.cursor/skills/iflow-yolo/SKILL.md +0 -0
  51. {cellpycore-0.2.1 → cellpycore-0.2.3}/.gitignore +0 -0
  52. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/00-tools/.gitkeep +0 -0
  53. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/00-tools/README.md +0 -0
  54. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/01-current-issues/.gitkeep +0 -0
  55. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/02-partly-solved-issues/.gitkeep +0 -0
  56. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/02-partly-solved-issues/issue100_original.md +0 -0
  57. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/02-partly-solved-issues/issue100_plan.md +0 -0
  58. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/02-partly-solved-issues/issue100_status.md +0 -0
  59. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/.gitkeep +0 -0
  60. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue10_original.md +0 -0
  61. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue10_plan.md +0 -0
  62. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue10_status.md +0 -0
  63. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue110_original.md +0 -0
  64. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue110_plan.md +0 -0
  65. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue110_status.md +0 -0
  66. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue112_original.md +0 -0
  67. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue112_plan.md +0 -0
  68. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue112_status.md +0 -0
  69. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue114_original.md +0 -0
  70. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue114_plan.md +0 -0
  71. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue114_status.md +0 -0
  72. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue115_original.md +0 -0
  73. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue115_plan.md +0 -0
  74. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue115_status.md +0 -0
  75. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue116_original.md +0 -0
  76. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue116_plan.md +0 -0
  77. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue116_status.md +0 -0
  78. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue117_original.md +0 -0
  79. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue117_plan.md +0 -0
  80. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue117_status.md +0 -0
  81. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue118_original.md +0 -0
  82. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue118_plan.md +0 -0
  83. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue118_status.md +0 -0
  84. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue121_original.md +0 -0
  85. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue121_plan.md +0 -0
  86. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue121_status.md +0 -0
  87. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue12_original.md +0 -0
  88. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue12_plan.md +0 -0
  89. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue12_status.md +0 -0
  90. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue13_original.md +0 -0
  91. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue13_plan.md +0 -0
  92. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue13_status.md +0 -0
  93. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue21_original.md +0 -0
  94. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue21_plan.md +0 -0
  95. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue21_status.md +0 -0
  96. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue22_original.md +0 -0
  97. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue22_plan.md +0 -0
  98. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue22_status.md +0 -0
  99. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue23_original.md +0 -0
  100. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue23_plan.md +0 -0
  101. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue23_status.md +0 -0
  102. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue24_original.md +0 -0
  103. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue24_status.md +0 -0
  104. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue29_original.md +0 -0
  105. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue29_plan.md +0 -0
  106. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue29_status.md +0 -0
  107. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue30_original.md +0 -0
  108. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue30_plan.md +0 -0
  109. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue30_status.md +0 -0
  110. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue32_original.md +0 -0
  111. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue32_plan.md +0 -0
  112. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue32_status.md +0 -0
  113. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue34_original.md +0 -0
  114. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue34_plan.md +0 -0
  115. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue36_original.md +0 -0
  116. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue36_status.md +0 -0
  117. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue39_original.md +0 -0
  118. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue39_plan.md +0 -0
  119. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue39_status.md +0 -0
  120. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue40_original.md +0 -0
  121. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue40_plan.md +0 -0
  122. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue40_status.md +0 -0
  123. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue41_original.md +0 -0
  124. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue41_plan.md +0 -0
  125. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue41_status.md +0 -0
  126. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue42_original.md +0 -0
  127. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue42_plan.md +0 -0
  128. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue42_status.md +0 -0
  129. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue43_original.md +0 -0
  130. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue43_plan.md +0 -0
  131. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue43_status.md +0 -0
  132. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue44_original.md +0 -0
  133. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue44_status.md +0 -0
  134. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue45_original.md +0 -0
  135. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue45_plan.md +0 -0
  136. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue45_status.md +0 -0
  137. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue50_original.md +0 -0
  138. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue50_plan.md +0 -0
  139. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue50_status.md +0 -0
  140. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue54_original.md +0 -0
  141. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue54_plan.md +0 -0
  142. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue54_status.md +0 -0
  143. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue55_original.md +0 -0
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  149. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue62_original.md +0 -0
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  152. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue64_original.md +0 -0
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  155. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue66_original.md +0 -0
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  166. {cellpycore-0.2.1 → cellpycore-0.2.3}/.issueflows/03-solved-issues/issue69_status.md +0 -0
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+ # GitHub Linguist: keep language stats focused on library source.
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+ # Without this, graphify-out/graph.html (~3.8MB) dominates as HTML.
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+
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+ graphify-out/** linguist-generated
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+ docs/** linguist-documentation
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+ tests/** linguist-documentation
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+ .issueflows/** linguist-documentation
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+ dev/** linguist-documentation
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+ scripts/** linguist-documentation
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+
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+ # Cross-platform line endings for shell helpers
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+ .aliases text eol=lf
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+ *.sh text eol=lf
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+ *.lock text eol=lf
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+ # Issue #136: Legacy bridge: preserve test_id through steps/summary output; legacy-schema support for merge_data
2
+
3
+ Source: https://github.com/cellpy/cellpy-core/issues/136
4
+
5
+ ## Original issue text
6
+
7
+ ## Summary
8
+
9
+ The `OldCellpyCellCore` legacy bridge strips `test_id` from the outbound
10
+ step/summary frames, which degrades multi-test (campaign-merged) objects to
11
+ cycle-only summary grouping. cellpy #507 works around it; these requests make
12
+ the workaround unnecessary and unblock campaign merges that keep original
13
+ per-test cycle numbers.
14
+
15
+ ## Details
16
+
17
+ 1. **Outbound `test_id` stripping.** `_native_steps_to_legacy` re-projects to a
18
+ fixed legacy column order (cell_core.py ~781-815) and the summary path
19
+ filters to `_legacy_summary_column_order` (~928-1065); `test_id` is in
20
+ `NATIVE_ONLY_STEP` / `NATIVE_ONLY_CYCLE` (mapping.py ~191-196, 227-231). The
21
+ inbound side is fine: a raw `test_id` column passes through (exception
22
+ lists, mapping.py ~129-144) and `make_step_table` groups on
23
+ `(test_id, cycle_num, step_num)` (proven by the cycler_small golden).
24
+ 2. **Bridge summary rebuilds native steps from the stripped legacy steps**
25
+ (`make_core_summary`, cell_core.py ~1010-1012), so
26
+ `use_tid` (summarizers.py ~792) is always False through the bridge —
27
+ cycle-only grouping, no per-test windowing, and cross-test collision when
28
+ cycle numbers overlap. cellpy #507's workaround: re-stamp `test_id` onto the
29
+ legacy steps frame post-bridge (depends on the inbound step rename staying
30
+ rename-only with no column filtering — please treat that as a contract or
31
+ provide the fix below).
32
+ 3. **`_add_legacy_summary_cruft`** (cell_core.py ~960-978) does global pandas
33
+ cumsums (cumulated CE, shifted_*, cumulated_ric*) even when the engine
34
+ windowed per test — these columns are wrong for multi-test objects.
35
+ 4. **`merge_data(schema=<legacy Schema>)` raises `AttributeError`** —
36
+ `HeadersNormal` lacks the native attribute names (`datapoint_num`,
37
+ `cycle_num`, `test_id`), and passing the native schema instead silently
38
+ skips offsets on legacy-named frames (`_max_column` returns 0 for missing
39
+ columns). Either document legacy schemas as unsupported for merge/update, or
40
+ add attribute aliases so bridge consumers can call
41
+ `merge_data`/`update_data` directly (cellpy #507 mirrors the semantics in
42
+ pandas instead).
43
+
44
+ ## Requests
45
+
46
+ - [ ] Carry `test_id` through the legacy step output (or have
47
+ `make_core_summary` reuse the native steps it already computed instead of
48
+ rebuilding from the stripped legacy frame).
49
+ - [ ] Optionally expose `test_id` in the legacy summary output behind a flag.
50
+ - [ ] Window `_add_legacy_summary_cruft` per `test_id` when present.
51
+ - [ ] Resolve the `merge_data` legacy-schema story (docs or aliases).
52
+ - [ ] Together these unblock `renumber_cycles=False` (original per-test cycle
53
+ numbers) for cellpy's campaign merge ahead of the native-schema path
54
+ (cellpy #511).
55
+
56
+ ## Refs
57
+
58
+ cellpy jepegit/cellpy#507 (campaign merge + workaround), jepegit/cellpy#511
59
+ (native schema opt-in), core tests test_golden.py (cycler_small composite-key
60
+ golden), test_merge.py / test_e2e.py (native multi-test invariants).
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+ # Issue #136 — plan
2
+
3
+ Source: https://github.com/cellpy/cellpy-core/issues/136
4
+
5
+ ## Goal
6
+
7
+ Legacy bridge keeps `test_id` on outbound steps (and summary when present) so
8
+ campaign-merged multi-test objects get per-test summary windowing through the
9
+ bridge — no cellpy #507 re-stamp workaround. Also fix legacy-cruft cumsums and
10
+ clarify `merge_data` + legacy schema.
11
+
12
+ ## Constraints
13
+
14
+ - Back-compat: single-test objects already have `test_id=0` on raw; emitting
15
+ `test_id` on steps/summary is **additive** (extra column). Goldens that pin
16
+ exact column sets may need updates.
17
+ - Mapping totality (`NATIVE_ONLY_*` / attr maps) must stay consistent.
18
+ - Do not change native engine behaviour; bridge-only (+ headers/mapping).
19
+ - Unblocks cellpy #510 V2-15 pin after a **new** cellpycore PyPI release.
20
+
21
+ ### Prior art
22
+
23
+ | Hit | Role | Plan |
24
+ |-----|------|------|
25
+ | [`OldCellpyCellCore._native_steps_to_legacy`](../../src/cellpycore/cell_core.py) / `_legacy_step_column_order` | Drops unknown cols via fixed order | **Extend** order with `test_id` when present |
26
+ | [`make_core_summary`](../../src/cellpycore/cell_core.py) rebuilds native steps from legacy `data.steps` | `use_tid` false after strip | Fixed once steps carry `test_id` through rename |
27
+ | [`_add_legacy_summary_cruft`](../../src/cellpycore/cell_core.py) | Global pandas cumsums | **Window** by `test_id` when column present |
28
+ | [`NATIVE_ONLY_STEP` / `NATIVE_ONLY_CYCLE`](../../src/cellpycore/legacy/mapping.py) | Declares `test_id` intentionally unbridged | **Remove** `test_id`; add identity scalar/cycle pairs |
29
+ | [`HeadersStepTable` / `HeadersSummary`](../../src/cellpycore/legacy/headers.py) | No `test_id` field today | **Add** `test_id: str = "test_id"` |
30
+ | cellpy [`cellreader.make_step_table` re-stamp](../../../cellpy/cellpy/readers/cellreader.py) (~2293) | Workaround | Becomes redundant after this; leave for a cellpy follow-up |
31
+ | [`merge_data`](../../src/cellpycore/merge.py) | Expects native `Schema` attrs | **Document + hard error** on legacy header schema (cellpy already uses pandas merge) |
32
+ | Toolbox `00-tools/` | Empty | None |
33
+ | Graph | Bridge / mapping communities | Touch `cell_core` + `legacy/mapping` + `legacy/headers` |
34
+
35
+ ## Approach
36
+
37
+ 1. **Steps outbound:** Add `HeadersStepTable.test_id`. Put `test_id` early in
38
+ `_legacy_step_column_order` (before cycle/step). Add identity
39
+ `STEP_SCALAR_PAIRS` entry `("test_id", "test_id")`; drop `test_id` from
40
+ `NATIVE_ONLY_STEP`. Update attr maps (`LEGACY_ATTR_TO_SCHEMA` /
41
+ `LEGACY_ATTR_UNMAPPED`) for the new header field.
42
+ 2. **Summary outbound:** Add `HeadersSummary.test_id`. Include in
43
+ `_legacy_summary_column_order` (near `cycle_index`) when present after rename.
44
+ Add identity `CYCLE_PAIRS` entry; drop `test_id` from `NATIVE_ONLY_CYCLE`.
45
+ No flag — always pass through when the native summary has it (single-test →
46
+ all `0`).
47
+ 3. **Cruft:** In `_add_legacy_summary_cruft`, if `test_id` in summary columns and
48
+ `nunique > 1` (or always when column present): compute cumsums / shifted /
49
+ ric **per group**; else keep today's global behaviour.
50
+ 4. **`merge_data` + legacy schema:** At entry, if `schema.raw` is
51
+ `HeadersNormal` (or lacks `datapoint_num` / `cycle_num` / `test_id`), raise
52
+ `TypeError` with a clear message: use `config.default_schema()` / native
53
+ `Schema`. Document in `merge_data` docstring. No full legacy-schema merge
54
+ implementation in this issue (cellpy does not call it).
55
+ 5. **Tests:** Bridge multi-test fixture (or reuse schema/e2e multi-test raw) →
56
+ `make_core_step_table` / `make_core_summary` → assert `test_id` on steps and
57
+ summary `{0,1}`; assert summary cumulatives restart per test. Mapping
58
+ totality tests update with the exception-set moves. One test that
59
+ `merge_data(..., schema=legacy.schema)` raises the new TypeError.
60
+
61
+ ## Files to touch
62
+
63
+ | Path | Change |
64
+ |------|--------|
65
+ | `src/cellpycore/legacy/headers.py` | `test_id` on step + summary headers |
66
+ | `src/cellpycore/legacy/mapping.py` | pairs / `NATIVE_ONLY_*` / attr maps + comments |
67
+ | `src/cellpycore/cell_core.py` | column order, cruft windowing |
68
+ | `tests/test_*.py` (bridge / mapping / merge) | new + update totality |
69
+ | `CHANGELOG` / HISTORY if present | note for 0.2.2 release |
70
+
71
+ ## Test strategy
72
+
73
+ ```bash
74
+ uv run pytest
75
+ uv run ruff check && uv run ruff format --check
76
+ ```
77
+
78
+ Focus: new bridge multi-test test + `tests/test_header_mapping.py` totality +
79
+ `tests/test_merge.py` legacy-schema error.
80
+
81
+ ## Decisions (confirmed 2026-07-17)
82
+
83
+ 1. **Summary `test_id`:** always when present (no flag).
84
+ 2. **`merge_data` legacy schema:** hard `TypeError` + docstring (also
85
+ `update_data`).
86
+ 3. **Cruft windowing:** when `test_id` column exists (groupby).
87
+ 4. **Goldens:** regenerate stage-B step/summary snapshots (additive `test_id`).
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1
+ # Issue #136 — status
2
+
3
+ - [x] Done
4
+
5
+ ## What's done
6
+
7
+ - Plan confirmed (2026-07-17): carry `test_id` on steps+summary; window cruft;
8
+ hard-error legacy schema on merge/update; regenerate goldens.
9
+ - Implemented on `136-legacy-bridge-preserve-test-id`.
10
+ - Version bumped `0.2.1` → `0.2.2` (static `pyproject.toml`); HISTORY promoted.
11
+ - `uv run pytest` 261 passed; ruff clean.
12
+ - Close: commit + PR; PyPI release via `release` from `main` after merge
13
+ (see `release-procedure.md`).
14
+
15
+ ## Remaining work
16
+
17
+ - None for the code issue. Post-merge: `iflow cleanup` + cut GitHub/PyPI
18
+ release for `0.2.2`, then re-pin cellpy.
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+ # Issue #139: legacy mapping: no entries for the energy columns (charge_energy_txt -> cumulative_charge_energy)
2
+
3
+ Source: https://github.com/cellpy/cellpy-core/issues/139
4
+
5
+ ## Original issue text
6
+
7
+ ## Summary
8
+
9
+ `cellpycore.legacy.mapping.LEGACY_ATTR_TO_SCHEMA["raw"]` has no entries for the
10
+ energy columns, although both sides exist:
11
+
12
+ - native schema defines `cumulative_charge_energy` and
13
+ `cumulative_discharge_energy`;
14
+ - cellpy's loader configurations declare `charge_energy_txt` and
15
+ `discharge_energy_txt`, and vendor files carry the data (Maccor `Watt-hr`,
16
+ Neware energy columns, …).
17
+
18
+ ```python
19
+ >>> from cellpycore.legacy import mapping
20
+ >>> {k: v for k, v in mapping.LEGACY_ATTR_TO_SCHEMA["raw"].items() if "energy" in k}
21
+ {}
22
+ ```
23
+
24
+ ## Why it matters now
25
+
26
+ Found while porting loaders to the `harmonize()` framework
27
+ (jepegit/cellpy#559 → #560). Consequences today:
28
+
29
+ 1. On the native runtime, `to_native()` passes the unmapped columns through
30
+ under their **legacy** names, so a native frame carries `charge_energy`
31
+ while the schema says the column should be `cumulative_charge_energy`.
32
+ Asking `c.schema.raw` for energy finds nothing.
33
+ 2. `harmonize()` drops undeclared columns by design, so a ported loader would
34
+ silently lose energy data unless it declares a passthrough — which is the
35
+ wrong long-term answer for a column the schema already has a name for.
36
+
37
+ ## Ask
38
+
39
+ Add the mapping entries:
40
+
41
+ | legacy attribute | native column |
42
+ |---|---|
43
+ | `charge_energy_txt` | `cumulative_charge_energy` |
44
+ | `discharge_energy_txt` | `cumulative_discharge_energy` |
45
+
46
+ Please confirm the reset-granularity convention for the energy columns matches
47
+ the capacity one (cycle-cumulative per direction, per the harmonized-raw spec's
48
+ *Capacity convention*) — the cellpy side will normalise them the same way.
49
+
50
+ ## Also unmapped (for a decision, not necessarily this issue)
51
+
52
+ These native raw columns have no legacy attribute mapped to them. Several are
53
+ correctly framework-owned or native-only, but `datetime_txt → epoch_time_utc`
54
+ looks like a genuine omission of the same kind:
55
+
56
+ `epoch_time_utc`, `step_type`, `step_mode`, `step_type_detail`, `cycle_type`,
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+ `ref_potential`, `step_charge_power`, `step_discharge_power`, `aux_*`,
58
+ `source_*`, `mask`, `test_id`.
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+
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+ Cross-repo order per the cellpy 2 release plan §3: core PR → core release →
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+ cellpy re-pin → cellpy consumes.
@@ -0,0 +1,119 @@
1
+ # Plan — issue #139 (legacy raw energy mapping)
2
+
3
+ ## Goal
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+
5
+ Bridge legacy raw energy columns through the authoritative header map so
6
+ `charge_energy` / `discharge_energy` rename to
7
+ `cumulative_charge_energy` / `cumulative_discharge_energy` (same pattern as
8
+ capacity), enabling `to_native()` / `harmonize()` consumers to find them under
9
+ the native schema names.
10
+
11
+ ## Constraints
12
+
13
+ - Keep change to `mapping.py` + its existing totality / spot-check tests.
14
+ No loader work, no engine changes, no cycle/step energy columns.
15
+ - Totality discipline (#116): every legacy attr / column value is either mapped
16
+ or in an exception set — never both, never neither.
17
+ - Value-level pairs (`RAW_PAIRS`) drive DataFrame renames; attribute table
18
+ (`LEGACY_ATTR_TO_SCHEMA`) must stay in sync (`test_legacy_attr_matches_value_mapping`).
19
+ - Out of scope (issue itself): `datetime_txt → epoch_time_utc` and the other
20
+ unmapped native-only list — track separately if wanted.
21
+ - Cross-repo: core PR → core release → cellpy re-pin → cellpy consumes
22
+ (cellpy #560). This issue is the core PR only.
23
+ - Spec already states the reset convention (see Approach); record that as the
24
+ answer to the issue's ask — do not invent a new convention here.
25
+
26
+ ### Prior art
27
+
28
+ - `RAW_PAIRS` / `LEGACY_ATTR_TO_SCHEMA["raw"]` / exception sets —
29
+ [`src/cellpycore/legacy/mapping.py`](src/cellpycore/legacy/mapping.py).
30
+ Mirror capacity entries (`charge_capacity_txt` →
31
+ `cumulative_charge_capacity`).
32
+ - Totality + spot-check tests —
33
+ [`tests/test_header_mapping.py`](tests/test_header_mapping.py)
34
+ (`test_raw_*_totality`, `test_known_translations`,
35
+ `test_legacy_attr_*`).
36
+ - Spec Capacity convention —
37
+ [`docs/specifications/harmonized-raw.md`](docs/specifications/harmonized-raw.md)
38
+ (§ Capacity convention): energy columns share cycle-cumulative / per-direction
39
+ semantics with capacity.
40
+ - Issue #42 (solved): engine reset-granularity normalizer already covers
41
+ `cumulative_*_energy` when source granularity differs.
42
+ - Fixture helper already assumes the rename —
43
+ [`dev/make_harmonized_raw.py`](dev/make_harmonized_raw.py)
44
+ (`charge_energy` → `cumulative_charge_energy`).
45
+ - Issue #116 (solved): attribute-table + `LEGACY_ATTR_UNMAPPED` discipline.
46
+ - Toolbox: none relevant.
47
+ - Graph: community 87 (`mapping.py`) / 82 (legacy headers) — no extra modules.
48
+
49
+ **Note vs architecture-plan D3:** `cellpy2-native-headers-migration-plan.md`
50
+ still lists raw energy as passthrough ("not synthesized — different reset
51
+ semantics"). That is **stale relative to the harmonized-raw Capacity
52
+ convention + #42**. Mapping is a rename of already-supplied columns, not
53
+ synthesis. After Accept, add a one-line correction in
54
+ `.issueflows/04-designs-and-guides/` (or a comment in the plan status) so
55
+ future agents do not re-block the bridge; updating the architecture-plan
56
+ doc can be a tiny follow-up outside this PR if desired.
57
+
58
+ ## Approach
59
+
60
+ 1. **Confirm convention (recorded decision):** energy matches capacity —
61
+ cumulative per cycle, per direction, reset at cycle boundary
62
+ (`harmonized-raw.md` Capacity convention). Cellpy loaders normalize the
63
+ same way; if a source is step-cumulative, #42's normalizer is the path,
64
+ not leaving the columns unmapped.
65
+
66
+ 2. **Value map** — add to `RAW_PAIRS` (next to the capacity pairs):
67
+ ```python
68
+ ("cumulative_charge_energy", "charge_energy"),
69
+ ("cumulative_discharge_energy", "discharge_energy"),
70
+ ```
71
+
72
+ 3. **Exception sets** — remove from the raw exceptions so totality stays
73
+ exact:
74
+ - `LEGACY_ONLY_RAW`: drop `"charge_energy"`, `"discharge_energy"`
75
+ - `NATIVE_ONLY_RAW`: drop `"cumulative_charge_energy"`,
76
+ `"cumulative_discharge_energy"`
77
+
78
+ 4. **Attribute map** — add to `LEGACY_ATTR_TO_SCHEMA["raw"]`:
79
+ ```python
80
+ "charge_energy_txt": "cumulative_charge_energy",
81
+ "discharge_energy_txt": "cumulative_discharge_energy",
82
+ ```
83
+ and remove those attrs from `LEGACY_ATTR_UNMAPPED["raw"]`.
84
+
85
+ 5. **Do not touch** step/cycle maps (`NATIVE_ONLY_STEP` still has
86
+ `charge_energy` / `discharge_energy` as *step-table* base signals — different
87
+ columns).
88
+
89
+ 6. **Behavior:** `legacy_to_native_raw()` / bridge renames will translate
90
+ energy instead of leaving it as a passthrough extra. That is the intended
91
+ fix for native-schema lookup and `harmonize()`.
92
+
93
+ ## Files to touch
94
+
95
+ | Path | Change |
96
+ |------|--------|
97
+ | `src/cellpycore/legacy/mapping.py` | `RAW_PAIRS` + attr table + raw exception sets |
98
+ | `tests/test_header_mapping.py` | Extend `test_known_translations` expected dict with the two energy renames |
99
+ | `.issueflows/04-designs-and-guides/` (short note) | Optional: "raw energy bridged like capacity (#139)" so D3 staleness is local |
100
+
101
+ ## Test strategy
102
+
103
+ ```bash
104
+ uv run pytest tests/test_header_mapping.py
105
+ uv run ruff check && uv run ruff format --check
106
+ ```
107
+
108
+ Existing totality / attr-sync tests should go green once exceptions and pairs
109
+ move together. No new fixture goldens expected (energy was not in
110
+ `RAW_PAIRS` before; bridge goldens that omit energy columns stay unaffected).
111
+
112
+ ## Open questions
113
+
114
+ 1. **Energy reset convention = capacity?** **Recommended: yes** (spec + #42
115
+ already say so). Accepting this plan accepts that answer for the GitHub
116
+ issue ask.
117
+ 2. **Update architecture-plan D3 in this PR?** **Recommended: no** — keep
118
+ core PR small; optional local design-guide note only. Say if you want the
119
+ architecture-plan edit bundled.
@@ -0,0 +1,18 @@
1
+ # Issue #139 status
2
+
3
+ - [x] Done
4
+
5
+ ## What's done
6
+
7
+ - Plan accepted (energy reset = capacity convention).
8
+ - `RAW_PAIRS` + `LEGACY_ATTR_TO_SCHEMA["raw"]` energy entries added.
9
+ - Dropped energy from `LEGACY_ONLY_RAW` / `NATIVE_ONLY_RAW` /
10
+ `LEGACY_ATTR_UNMAPPED["raw"]`.
11
+ - `test_known_translations` updated.
12
+ - Design note: `.issueflows/04-designs-and-guides/legacy-raw-energy-mapping.md`.
13
+ - `uv run pytest` — 261 passed; ruff clean.
14
+ - Version bump `0.2.2` → `0.2.3`; `HISTORY.md` promoted.
15
+
16
+ ## Remaining work
17
+
18
+ - None (ship via PR).
@@ -0,0 +1,15 @@
1
+ # Legacy bridge carries `test_id` (#136)
2
+
3
+ **Context.** `OldCellpyCellCore` used to drop `test_id` from outbound steps /
4
+ summary via fixed column orders + `NATIVE_ONLY_*` exceptions. That forced cellpy
5
+ #507 to re-stamp steps so campaign summaries could window per test.
6
+
7
+ **Decision.** Bridge `test_id` as an identity column on steps and summary when
8
+ present. Window `_add_legacy_summary_cruft` by `test_id`. `merge_data` /
9
+ `update_data` require native `config.Schema` (hard `TypeError` on `Headers*`).
10
+
11
+ **Alternatives.** Opt-in flag for summary `test_id` — rejected (additive is
12
+ enough). Full legacy-schema merge aliases — rejected (step/cycle attrs incomplete;
13
+ cellpy uses pandas merge).
14
+
15
+ **Refs.** cellpy #507 / #510 / #511; release after this → re-pin cellpy.
@@ -0,0 +1,24 @@
1
+ # Legacy raw energy mapping (#139)
2
+
3
+ **Context.** Raw `charge_energy` / `discharge_energy` used to sit in
4
+ `LEGACY_ONLY_RAW` (passthrough). Architecture-plan D3 still says that and
5
+ claims different reset semantics vs native cumulative energy.
6
+
7
+ **Decision.** Bridge them like capacity via `RAW_PAIRS` /
8
+ `LEGACY_ATTR_TO_SCHEMA["raw"]`:
9
+
10
+ | legacy value | native |
11
+ |---|---|
12
+ | `charge_energy` | `cumulative_charge_energy` |
13
+ | `discharge_energy` | `cumulative_discharge_energy` |
14
+
15
+ Reset convention matches capacity: cycle-cumulative, per direction
16
+ (`docs/specifications/harmonized-raw.md` Capacity convention). Wrong source
17
+ granularity → issue #42 normalizer, not leaving columns unmapped.
18
+
19
+ **Alternatives.** Keep passthrough (rejected — breaks `to_native()` /
20
+ `harmonize()` schema lookup). Synthesize energy from other signals (rejected —
21
+ rename only).
22
+
23
+ **Refs.** #139; cellpy #560; supersedes architecture-plan D3 for these two
24
+ columns only.
@@ -79,3 +79,13 @@ uv run pre-commit install
79
79
  the public API.
80
80
  - Per-step stat column names (`<signal>_<stat>`) are a fixed engine contract,
81
81
  not schema-injected (issue #70).
82
+
83
+ ## Release & version bump
84
+
85
+ Static version in ``pyproject.toml`` (``project.version``). Bump with::
86
+
87
+ uv version --bump patch|minor|major
88
+
89
+ Cut a GitHub release from ``main`` after merge (``release`` alias / see
90
+ ``release-procedure.md``) so ``release.yml`` publishes ``cellpycore`` to PyPI.
91
+
@@ -4,6 +4,22 @@ All notable changes to this project will be documented in this file.
4
4
 
5
5
  ## [Unreleased]
6
6
 
7
+ ## [0.2.3] - 2026-07-19
8
+
9
+ - Bridge legacy raw ``charge_energy`` / ``discharge_energy`` to
10
+ ``cumulative_charge_energy`` / ``cumulative_discharge_energy`` via
11
+ ``RAW_PAIRS`` and ``LEGACY_ATTR_TO_SCHEMA``, matching the capacity
12
+ cycle-cumulative convention. (#139)
13
+
14
+ ## [0.2.2] - 2026-07-17
15
+
16
+ - Legacy bridge carries ``test_id`` through step and summary frames (identity
17
+ mapping) so campaign-merged multi-test objects keep per-test summary
18
+ windowing without a consumer re-stamp. ``_add_legacy_summary_cruft`` cumsums
19
+ are windowed per ``test_id`` when present. ``merge_data`` / ``update_data``
20
+ raise ``TypeError`` on legacy ``Headers*`` schemas (require native
21
+ ``config.Schema``). Golden step/summary snapshots regenerated. (#136)
22
+
7
23
  ## [0.2.1] - 2026-07-15
8
24
 
9
25
  - Fix `OldCellpyCellCore.make_core_summary` to pass `test_mode` into
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: cellpycore
3
- Version: 0.2.1
3
+ Version: 0.2.3
4
4
  Summary: Core engine for cellpy: fast, thread-safe step and cycle summarization of battery-cycling raw data
5
5
  License-Expression: MIT
6
6
  License-File: LICENSE
@@ -297,15 +297,18 @@
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  "295": "Community 295",
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  "296": "Community 296",
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  "297": "Community 297",
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+ "298": "Community 298",
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  "299": "Community 299",
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  "300": "Community 300",
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  "301": "Community 301",
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  "302": "Community 302",
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+ "303": "Community 303",
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  "304": "Community 304",
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  "305": "Community 305",
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  "306": "Community 306",
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  "307": "Community 307",
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  "308": "Community 308",
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+ "309": "Community 309",
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  "310": "Community 310",
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  "311": "Community 311",
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  "312": "Community 312",
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  "314": "Community 314",
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  "315": "Community 315",
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  "316": "Community 316",
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+ "317": "Community 317",
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  "319": "Community 319",
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+ "321": "Community 321",
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  "322": "Community 322",
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- "323": "Community 323",
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  "324": "Community 324",
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+ "326": "Community 326",
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  "327": "Community 327",
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  "341": "Community 341",
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- "344": "Community 344"
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+ "344": "Community 344",
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+ "345": "Community 345",
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+ "346": "Community 346",
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+ "347": "Community 347",
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+ "348": "Community 348",
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+ "349": "Community 349",
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+ "350": "Community 350",
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+ "351": "Community 351",
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+ "353": "Community 353",
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+ "354": "Community 354",
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+ "356": "Community 356",
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+ "357": "Community 357",
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+ "358": "Community 358",
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+ "360": "Community 360",
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+ "361": "Community 361",
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+ "362": "Community 362",
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+ "363": "Community 363",
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+ "364": "Community 364",
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+ "365": "Community 365",
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+ "366": "Community 366",
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+ "367": "Community 367",
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+ "368": "Community 368"
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  }