cellprofiler-core-nightly 5.0.0.dev686__tar.gz → 5.0.0.dev690__tar.gz

{cellprofiler_core_nightly-5.0.0.dev686 → cellprofiler_core_nightly-5.0.0.dev690}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: cellprofiler-core-nightly
-Version: 5.0.0.dev686
+Version: 5.0.0.dev690
 Summary: cellprofiler-core implements the bulk of CellProfiler's non-gui functionality
 Author: Anne Carpenter, Thouis (Ray) Jones, Lee Kamentsky, Vebjorn Ljosa, David Logan, Mark Bray, Madison Swain-Bowden, Allen Goodman, Claire McQuinn, Alice Lucas, Callum Tromans-Coia
 Author-email: Beth Cimini <bcimini@broadinstitute.org>, David Stirling <dstirling@glencoesoftware.com>, Nodar Gogoberidze <ngogober@broadinstitute.org>
@@ -80,8 +80,7 @@ Requires-Dist: psutil>=5.9.5
 Requires-Dist: pyzmq>=22.3.0
 Requires-Dist: scikit-image>=0.20.0
 Requires-Dist: scipy<1.11,>=1.9.1
-Requires-Dist: scyjava<1.12.3,>=1.9.1
-Requires-Dist: jgo<2.0.0
+Requires-Dist: scyjava>=1.9.1
 Requires-Dist: zarr>=2.16.1
 Requires-Dist: google-cloud-storage~=2.10.0
 Requires-Dist: packaging>=20.0

{cellprofiler_core_nightly-5.0.0.dev686 → cellprofiler_core_nightly-5.0.0.dev690}/cellprofiler_core/_version.py

@@ -18,7 +18,7 @@ version_tuple: tuple[int | str, ...]
 commit_id: str | None
 __commit_id__: str | None
 
-__version__ = version = '5.0.0.dev686'
-__version_tuple__ = version_tuple = (5, 0, 0, 'dev686')
+__version__ = version = '5.0.0.dev690'
+__version_tuple__ = version_tuple = (5, 0, 0, 'dev690')
 
-__commit_id__ = commit_id = 'g0620ff4c4'
+__commit_id__ = commit_id = 'g0d30679fc'

{cellprofiler_core_nightly-5.0.0.dev686 → cellprofiler_core_nightly-5.0.0.dev690}/cellprofiler_core/utilities/java.py

@@ -24,7 +24,17 @@ def start_java():
     if scyjava.jvm_started():
         return
 
+    # java fetching
+    # https://github.com/scijava/scyjava/issues/89
+    scyjava.config.set_java_constraints(fetch="auto")
+
     # Add Bio-Formats Java dependency.
+    # scijava.public no longer proxies OME's artifactory, so RELEASE metadata
+    # resolution for ome:formats-gpl fails against it on a clean ~/.m2 (e.g. CI).
+    # Point at OME's own repository directly.
+    scyjava.config.add_repositories(
+        {"ome.releases": "https://artifacts.openmicroscopy.org/artifactory/ome.releases"}
+    )
     scyjava.config.endpoints.append("ome:formats-gpl")
     scyjava.config.endpoints.append("org.scijava:scijava-config")
 

{cellprofiler_core_nightly-5.0.0.dev686 → cellprofiler_core_nightly-5.0.0.dev690}/cellprofiler_core_nightly.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: cellprofiler-core-nightly
-Version: 5.0.0.dev686
+Version: 5.0.0.dev690
 Summary: cellprofiler-core implements the bulk of CellProfiler's non-gui functionality
 Author: Anne Carpenter, Thouis (Ray) Jones, Lee Kamentsky, Vebjorn Ljosa, David Logan, Mark Bray, Madison Swain-Bowden, Allen Goodman, Claire McQuinn, Alice Lucas, Callum Tromans-Coia
 Author-email: Beth Cimini <bcimini@broadinstitute.org>, David Stirling <dstirling@glencoesoftware.com>, Nodar Gogoberidze <ngogober@broadinstitute.org>
@@ -80,8 +80,7 @@ Requires-Dist: psutil>=5.9.5
 Requires-Dist: pyzmq>=22.3.0
 Requires-Dist: scikit-image>=0.20.0
 Requires-Dist: scipy<1.11,>=1.9.1
-Requires-Dist: scyjava<1.12.3,>=1.9.1
-Requires-Dist: jgo<2.0.0
+Requires-Dist: scyjava>=1.9.1
 Requires-Dist: zarr>=2.16.1
 Requires-Dist: google-cloud-storage~=2.10.0
 Requires-Dist: packaging>=20.0

{cellprofiler_core_nightly-5.0.0.dev686 → cellprofiler_core_nightly-5.0.0.dev690}/cellprofiler_core_nightly.egg-info/requires.txt

@@ -12,8 +12,7 @@ psutil>=5.9.5
 pyzmq>=22.3.0
 scikit-image>=0.20.0
 scipy<1.11,>=1.9.1
-scyjava<1.12.3,>=1.9.1
-jgo<2.0.0
+scyjava>=1.9.1
 zarr>=2.16.1
 google-cloud-storage~=2.10.0
 packaging>=20.0

cellprofiler_core_nightly-5.0.0.dev690/cellprofiler_core_nightly.egg-info/scm_version.json

@@ -0,0 +1,8 @@
+{
+  "tag": "5.0.0.dev0",
+  "distance": 690,
+  "node": "g0d30679fcc36f2067f886e27aadc0e12dbdf6ed1",
+  "dirty": true,
+  "branch": "main",
+  "node_date": "2026-09-01"
+}

{cellprofiler_core_nightly-5.0.0.dev686 → cellprofiler_core_nightly-5.0.0.dev690}/pyproject.toml

@@ -9,7 +9,7 @@ readme = "README.md"
 requires-python = ">=3.9"
 keywords = [ "computer vision", "image analysis", "biology", "cell", "cellprofiler",]
 classifiers = [ "Development Status :: 5 - Production/Stable", "Intended Audience :: Science/Research", "License :: OSI Approved :: BSD License", "Operating System :: OS Independent", "Programming Language :: Python :: 3.9", "Topic :: Scientific/Engineering :: Bio-Informatics", "Topic :: Scientific/Engineering :: Image Recognition", "Topic :: Scientific/Engineering :: Image Processing", "Topic :: Scientific/Engineering",]
-dependencies = [ "cellprofiler-library-nightly>=5.dev", "boto3>=1.12.28", "centrosome>=1.3.0", "docutils>=0.15.2", "future>=0.18.2", "fsspec>=2021.11.0", "h5py>=3.7.0", "lxml>=4.6.4", "matplotlib>=3.1.3,<4", "numpy>=1.24.4,<2", "psutil>=5.9.5", "pyzmq>=22.3.0", "scikit-image>=0.20.0", "scipy>=1.9.1,<1.11", "scyjava>=1.9.1,<1.12.3", "jgo<2.0.0", "zarr>=2.16.1", "google-cloud-storage~=2.10.0", "packaging>=20.0", "importlib_metadata",]
+dependencies = [ "cellprofiler-library-nightly>=5.dev", "boto3>=1.12.28", "centrosome>=1.3.0", "docutils>=0.15.2", "future>=0.18.2", "fsspec>=2021.11.0", "h5py>=3.7.0", "lxml>=4.6.4", "matplotlib>=3.1.3,<4", "numpy>=1.24.4,<2", "psutil>=5.9.5", "pyzmq>=22.3.0", "scikit-image>=0.20.0", "scipy>=1.9.1,<1.11", "scyjava>=1.9.1", "zarr>=2.16.1", "google-cloud-storage~=2.10.0", "packaging>=20.0", "importlib_metadata",]
 dynamic = [ "version",]
 [[project.authors]]
 name = "Anne Carpenter"

cellprofiler_core_nightly-5.0.0.dev686/cellprofiler_core_nightly.egg-info/scm_version.json

@@ -1,8 +0,0 @@
-{
-  "tag": "5.0.0.dev0",
-  "distance": 686,
-  "node": "g0620ff4c4675ee18c359ed7a4524bb6b185bfa63",
-  "dirty": true,
-  "branch": "main",
-  "node_date": "2026-08-31"
-}