cellmap-analyze 0.2.3__tar.gz → 0.3.1__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (62) hide show
  1. {cellmap_analyze-0.2.3/src/cellmap_analyze.egg-info → cellmap_analyze-0.3.1}/PKG-INFO +1 -1
  2. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/pyproject.toml +1 -1
  3. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze/cythonizing/centers.cpp +152 -152
  4. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze/cythonizing/touching.c +152 -152
  5. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze/process/skeletonize.py +338 -71
  6. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze/util/dask_util.py +220 -16
  7. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze/util/image_data_interface.py +10 -0
  8. cellmap_analyze-0.3.1/src/cellmap_analyze/util/voxel_size_utils.py +307 -0
  9. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze/util/zarr_io.py +26 -8
  10. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze/util/zarr_util.py +25 -19
  11. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1/src/cellmap_analyze.egg-info}/PKG-INFO +1 -1
  12. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze.egg-info/SOURCES.txt +1 -0
  13. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/tests/test_non_integer_voxel_size_integration.py +44 -9
  14. cellmap_analyze-0.3.1/tests/test_wave_scheduling.py +123 -0
  15. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/tests/test_zarr_v3.py +202 -6
  16. cellmap_analyze-0.2.3/src/cellmap_analyze/util/voxel_size_utils.py +0 -183
  17. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/LICENSE +0 -0
  18. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/MANIFEST.in +0 -0
  19. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/README.md +0 -0
  20. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/setup.cfg +0 -0
  21. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/setup.py +0 -0
  22. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze/__init__.py +0 -0
  23. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze/analyze/__init__.py +0 -0
  24. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze/analyze/assign_to_organelles.py +0 -0
  25. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze/analyze/fit_lines_to_segmentations.py +0 -0
  26. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze/analyze/measure.py +0 -0
  27. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze/cythonizing/__init__.py +0 -0
  28. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze/cythonizing/bresenham3D.c +0 -0
  29. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze/cythonizing/bresenham3D.pyx +0 -0
  30. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze/cythonizing/centers.pyx +0 -0
  31. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze/cythonizing/impl/centers.hpp +0 -0
  32. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze/cythonizing/process_arrays.c +0 -0
  33. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze/cythonizing/process_arrays.pyx +0 -0
  34. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze/cythonizing/touching.pyx +0 -0
  35. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze/process/__init__.py +0 -0
  36. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze/process/clean_connected_components.py +0 -0
  37. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze/process/connected_components.py +0 -0
  38. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze/process/contact_sites.py +0 -0
  39. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze/process/fill_holes.py +0 -0
  40. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze/process/filter_ids.py +0 -0
  41. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze/process/label_with_mask.py +0 -0
  42. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze/process/morphological_operations.py +0 -0
  43. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze/process/mutex_watershed.py +0 -0
  44. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze/util/__init__.py +0 -0
  45. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze/util/block_util.py +0 -0
  46. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze/util/cellmap_array.py +0 -0
  47. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze/util/information_holders.py +0 -0
  48. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze/util/io_util.py +0 -0
  49. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze/util/mask_util.py +0 -0
  50. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze/util/measure_util.py +0 -0
  51. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze/util/mixins.py +0 -0
  52. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze/util/neuroglancer_util.py +0 -0
  53. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze/util/sharded_skeleton.py +0 -0
  54. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze/util/skeleton_util.py +0 -0
  55. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze.egg-info/dependency_links.txt +0 -0
  56. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze.egg-info/entry_points.txt +0 -0
  57. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze.egg-info/requires.txt +0 -0
  58. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cellmap_analyze.egg-info/top_level.txt +0 -0
  59. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cli/__init__.py +0 -0
  60. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/src/cli/cli.py +0 -0
  61. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/tests/test_utils.py +0 -0
  62. {cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/tests/test_voxel_size_utils.py +0 -0
{cellmap_analyze-0.2.3/src/cellmap_analyze.egg-info → cellmap_analyze-0.3.1}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: cellmap-analyze
3
- Version: 0.2.3
3
+ Version: 0.3.1
4
4
  Summary: Code to perform analysis on segmentations like those produced by CellMap
5
5
  Author-email: David Ackerman <ackermand@janelia.hhmi.org>
6
6
  Maintainer-email: David Ackerman <ackermand@janelia.hhmi.org>
{cellmap_analyze-0.2.3 → cellmap_analyze-0.3.1}/pyproject.toml RENAMED
@@ -1,6 +1,6 @@
1
1
  [project]
2
2
  name = "cellmap-analyze"
3
- version = "0.2.3"
3
+ version = "0.3.1"
4
4
  description = "Code to perform analysis on segmentations like those produced by CellMap"
5
5
  readme = "README.md"
6
6
  license-files = ["LICENSE"]