cellin 0.1.1__tar.gz

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Files changed (109) hide show
  1. cellin-0.1.1/.github/ISSUE_TEMPLATE/architecture_proposal.yml +49 -0
  2. cellin-0.1.1/.github/ISSUE_TEMPLATE/bug_report.yml +70 -0
  3. cellin-0.1.1/.github/ISSUE_TEMPLATE/config.yml +5 -0
  4. cellin-0.1.1/.github/ISSUE_TEMPLATE/documentation_request.yml +35 -0
  5. cellin-0.1.1/.github/ISSUE_TEMPLATE/feature_request.yml +48 -0
  6. cellin-0.1.1/.github/ISSUE_TEMPLATE/performance_issue.yml +51 -0
  7. cellin-0.1.1/.github/ISSUE_TEMPLATE/refactor_hotspot.yml +49 -0
  8. cellin-0.1.1/.github/ISSUE_TEMPLATE/repo_rigor.yml +46 -0
  9. cellin-0.1.1/.github/PULL_REQUEST_TEMPLATE/bug_fix.md +32 -0
  10. cellin-0.1.1/.github/PULL_REQUEST_TEMPLATE/docs.md +32 -0
  11. cellin-0.1.1/.github/PULL_REQUEST_TEMPLATE/feature.md +32 -0
  12. cellin-0.1.1/.github/PULL_REQUEST_TEMPLATE/refactor.md +32 -0
  13. cellin-0.1.1/.github/PULL_REQUEST_TEMPLATE/release_rigor.md +32 -0
  14. cellin-0.1.1/.github/PULL_REQUEST_TEMPLATE/security_fix.md +32 -0
  15. cellin-0.1.1/.github/PULL_REQUEST_TEMPLATE.md +33 -0
  16. cellin-0.1.1/.github/release.yml +26 -0
  17. cellin-0.1.1/.github/rulesets/default-branch-release-grade.json +44 -0
  18. cellin-0.1.1/.github/workflows/release-please.yml +36 -0
  19. cellin-0.1.1/.github/workflows/release.yml +107 -0
  20. cellin-0.1.1/.github/workflows/rolling-release.yml +110 -0
  21. cellin-0.1.1/.github/workflows/verify.yml +104 -0
  22. cellin-0.1.1/.gitignore +195 -0
  23. cellin-0.1.1/.python-version +1 -0
  24. cellin-0.1.1/.release-please-manifest.json +3 -0
  25. cellin-0.1.1/CHANGELOG.md +9 -0
  26. cellin-0.1.1/CODEOWNERS +4 -0
  27. cellin-0.1.1/CONTRIBUTING.md +97 -0
  28. cellin-0.1.1/LICENSE +21 -0
  29. cellin-0.1.1/Makefile +63 -0
  30. cellin-0.1.1/PKG-INFO +89 -0
  31. cellin-0.1.1/README.md +45 -0
  32. cellin-0.1.1/RELEASING.md +94 -0
  33. cellin-0.1.1/SECURITY.md +22 -0
  34. cellin-0.1.1/docs/architecture/README.md +18 -0
  35. cellin-0.1.1/docs/evals/README.md +32 -0
  36. cellin-0.1.1/docs/index.md +25 -0
  37. cellin-0.1.1/evals/__init__.py +1 -0
  38. cellin-0.1.1/evals/benchmarks/__init__.py +1 -0
  39. cellin-0.1.1/evals/benchmarks/dreaming/__init__.py +5 -0
  40. cellin-0.1.1/evals/benchmarks/dreaming/cases.py +5 -0
  41. cellin-0.1.1/evals/benchmarks/retrieval/__init__.py +1 -0
  42. cellin-0.1.1/evals/benchmarks/retrieval/cases.py +5 -0
  43. cellin-0.1.1/evals/corpora/contradiction_memory.json +26 -0
  44. cellin-0.1.1/evals/corpora/conversation_memory.json +38 -0
  45. cellin-0.1.1/evals/corpora/multimodal_artifacts.json +62 -0
  46. cellin-0.1.1/evals/corpora/project_memory.json +38 -0
  47. cellin-0.1.1/evals/corpora/recency_trap.json +26 -0
  48. cellin-0.1.1/evals/fixtures/__init__.py +1 -0
  49. cellin-0.1.1/evals/fixtures/dreaming/__init__.py +1 -0
  50. cellin-0.1.1/evals/fixtures/dreaming/atlas_corpus.json +35 -0
  51. cellin-0.1.1/evals/fixtures/ingest/__init__.py +1 -0
  52. cellin-0.1.1/evals/fixtures/ingest/sample_dataset.json +62 -0
  53. cellin-0.1.1/examples/starter/README.md +9 -0
  54. cellin-0.1.1/examples/starter/cellin-starter.json +6 -0
  55. cellin-0.1.1/examples/starter/seed_envelopes.json +62 -0
  56. cellin-0.1.1/lefthook.yml +12 -0
  57. cellin-0.1.1/mkdocs.yml +11 -0
  58. cellin-0.1.1/pyproject.toml +74 -0
  59. cellin-0.1.1/release-please-config.json +16 -0
  60. cellin-0.1.1/renovate.json +4 -0
  61. cellin-0.1.1/scripts/release/verify_version.py +105 -0
  62. cellin-0.1.1/src/cellin/__about__.py +5 -0
  63. cellin-0.1.1/src/cellin/__init__.py +5 -0
  64. cellin-0.1.1/src/cellin/cli/__init__.py +5 -0
  65. cellin-0.1.1/src/cellin/cli/__main__.py +8 -0
  66. cellin-0.1.1/src/cellin/cli/app.py +259 -0
  67. cellin-0.1.1/src/cellin/cli/config.py +108 -0
  68. cellin-0.1.1/src/cellin/core/__init__.py +89 -0
  69. cellin-0.1.1/src/cellin/core/contracts.py +222 -0
  70. cellin-0.1.1/src/cellin/core/models.py +242 -0
  71. cellin-0.1.1/src/cellin/dreaming/__init__.py +30 -0
  72. cellin-0.1.1/src/cellin/dreaming/benchmarks.py +26 -0
  73. cellin-0.1.1/src/cellin/dreaming/models.py +110 -0
  74. cellin-0.1.1/src/cellin/dreaming/scheduler.py +72 -0
  75. cellin-0.1.1/src/cellin/dreaming/service.py +96 -0
  76. cellin-0.1.1/src/cellin/dreaming/strategies.py +414 -0
  77. cellin-0.1.1/src/cellin/evals/__init__.py +18 -0
  78. cellin-0.1.1/src/cellin/evals/__main__.py +27 -0
  79. cellin-0.1.1/src/cellin/evals/assets.py +179 -0
  80. cellin-0.1.1/src/cellin/evals/retrieval_benchmarks.py +37 -0
  81. cellin-0.1.1/src/cellin/evals/runner.py +404 -0
  82. cellin-0.1.1/src/cellin/evals/smoke.py +31 -0
  83. cellin-0.1.1/src/cellin/ingest/__init__.py +22 -0
  84. cellin-0.1.1/src/cellin/ingest/adapters.py +150 -0
  85. cellin-0.1.1/src/cellin/ingest/envelope.py +31 -0
  86. cellin-0.1.1/src/cellin/ingest/pipeline.py +156 -0
  87. cellin-0.1.1/src/cellin/py.typed +1 -0
  88. cellin-0.1.1/src/cellin/ranking/__init__.py +6 -0
  89. cellin-0.1.1/src/cellin/ranking/profiles.py +67 -0
  90. cellin-0.1.1/src/cellin/ranking/weighted.py +121 -0
  91. cellin-0.1.1/src/cellin/retrieval/__init__.py +6 -0
  92. cellin-0.1.1/src/cellin/retrieval/candidate_generation.py +97 -0
  93. cellin-0.1.1/src/cellin/retrieval/service.py +69 -0
  94. cellin-0.1.1/src/cellin/runtime/__init__.py +6 -0
  95. cellin-0.1.1/src/cellin/runtime/builtins.py +43 -0
  96. cellin-0.1.1/src/cellin/runtime/registry.py +125 -0
  97. cellin-0.1.1/src/cellin/stores/__init__.py +6 -0
  98. cellin-0.1.1/src/cellin/stores/sqlite.py +235 -0
  99. cellin-0.1.1/src/cellin/stores/vector_index.py +60 -0
  100. cellin-0.1.1/tests/contracts/test_registry.py +81 -0
  101. cellin-0.1.1/tests/evals/test_assets.py +116 -0
  102. cellin-0.1.1/tests/evals/test_runner.py +35 -0
  103. cellin-0.1.1/tests/evals/test_smoke.py +13 -0
  104. cellin-0.1.1/tests/integration/cli/test_cli.py +93 -0
  105. cellin-0.1.1/tests/integration/dreaming/test_dreaming.py +256 -0
  106. cellin-0.1.1/tests/integration/ingest/test_pipeline.py +64 -0
  107. cellin-0.1.1/tests/integration/retrieval/test_weighted_retriever.py +280 -0
  108. cellin-0.1.1/tests/unit/test_package.py +9 -0
  109. cellin-0.1.1/uv.lock +1051 -0
@@ -0,0 +1,49 @@
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+ name: Architecture or design issue
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+ description: Capture a boundary problem, design debt item, or structural change.
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+ title: "[Architecture]: "
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+ labels: ["architecture"]
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+ body:
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+ - type: markdown
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+ attributes:
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+ value: |
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+ Use this for confirmed boundary problems, coupling issues, or design changes.
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+
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+ - type: textarea
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+ label: Affected boundary or seam
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+ description: Which subsystem boundary or design contract is the issue about?
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+ - type: textarea
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+ id: current_problem
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+ label: Current problem
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+ description: What is structurally wrong or expensive today?
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+ required: true
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+
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+ - type: textarea
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+ id: evidence
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+ attributes:
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+ label: Evidence
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+ description: Commands, metrics, traces, or examples that show the problem.
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+ render: shell
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+ validations:
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+ required: true
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+
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+ - type: textarea
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+ id: proposed_direction
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+ label: Proposed direction
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+ description: What boundary, ownership, or architecture change should happen?
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+
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+ id: acceptance
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+ attributes:
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+ label: Acceptance criteria
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+ description: What outcome or simplification would close this issue?
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+ placeholder: |
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+ - [ ] ...
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+ - [ ] ...
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+ name: Bug report
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+ description: Report a reproducible problem with Cellin.
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+ title: "[Bug]: "
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+ labels: ["bug"]
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+ body:
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+ - type: markdown
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+ attributes:
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+ value: |
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+ Thanks for reporting a bug.
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+ label: Summary
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+ label: Reproduction steps
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+ 2. ...
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+ 3. ...
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+ required: true
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+ label: Expected behavior
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+ validations:
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+ required: true
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+ - type: textarea
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+ id: actual
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+ attributes:
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+ label: Actual behavior
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+ validations:
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+ required: true
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+ - type: textarea
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+ id: evidence
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+ attributes:
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+ label: Logs and output
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+ description: Paste CLI output, stack traces, or relevant JSON snippets.
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+ render: shell
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+
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+ - type: input
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+ id: version
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+ attributes:
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+ label: Version or commit
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+ description: Git SHA, tag, or package version.
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+ placeholder: e.g. 0.1.1 or 76aa2a1
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+ validations:
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+ required: true
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+
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+ - type: input
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+ id: environment
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+ attributes:
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+ label: Environment
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+ description: OS, Python version, and relevant tooling versions.
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+ placeholder: e.g. macOS 15, Python 3.12.10, uv 0.7.x
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+ validations:
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+ required: true
@@ -0,0 +1,5 @@
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+ blank_issues_enabled: false
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+ contact_links:
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+ - name: Report a security issue privately
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+ url: https://github.com/ben-ranford/cellin/security/advisories/new
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+ about: Use a private security advisory instead of a public issue.
@@ -0,0 +1,35 @@
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+ name: Documentation issue
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+ description: Report missing, outdated, or unclear documentation.
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+ title: "[Docs]: "
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+ labels: ["documentation"]
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+ body:
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+ - type: textarea
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+ id: gap
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+ attributes:
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+ label: Documentation gap
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+ description: What is missing, unclear, or incorrect?
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+ required: true
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+
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+ - type: textarea
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+ id: audience
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+ attributes:
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+ label: Affected audience
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+ description: Who is blocked or confused by this gap?
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+ validations:
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+ required: true
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+ - type: textarea
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+ id: sources
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+ attributes:
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+ label: Source material
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+ - type: textarea
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+ id: acceptance
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+ attributes:
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+ label: Acceptance criteria
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+ description: What should a reader be able to do after this is fixed?
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+ placeholder: |
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+ - [ ] ...
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+ - [ ] ...
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+ name: Feature request
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+ description: Propose an improvement or new capability.
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+ title: "[Feature]: "
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+ labels: ["enhancement"]
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+ body:
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+ - type: markdown
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+ attributes:
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+ value: |
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+ Thanks for the idea.
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+ Focus on user problem, expected behavior, and success criteria.
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+
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+ - type: textarea
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+ id: problem
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+ attributes:
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+ label: Problem statement
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+ description: What user pain does this solve?
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+ placeholder: As a ..., I need ... because ...
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+ validations:
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+ required: true
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+
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+ - type: textarea
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+ id: proposal
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+ attributes:
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+ label: Proposed solution
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+ description: Describe behavior, CLI changes, APIs, or UX.
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+ validations:
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+ required: true
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+
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+ - type: textarea
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+ id: alternatives
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+ attributes:
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+ label: Alternatives considered
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+ description: Other options and why they are less suitable.
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+ label: Impact and scope
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+ description: Affected runtime surfaces, docs, tests, performance, or compatibility.
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+ id: acceptance
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+ attributes:
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+ label: Acceptance criteria
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+ description: What must be true for this to be considered done?
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+ placeholder: |
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+ - [ ] ...
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+ - [ ] ...
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+ name: Performance or efficiency issue
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+ description: Report a measured slowdown, waste pattern, or inefficiency.
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+ title: "[Performance]: "
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+ labels: ["performance"]
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+ body:
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+ - type: markdown
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+ attributes:
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+ value: |
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+ Use this for measured regressions or confirmed waste patterns.
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+ - type: textarea
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+ attributes:
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+ label: Summary
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+ description: What is slow or wasteful?
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+ - type: textarea
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+ label: Workload or scenario
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+ validations:
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+ required: true
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+
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+ - type: textarea
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+ id: evidence
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+ attributes:
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+ label: Evidence
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+ description: Include timings, counts, ratios, or profiling output.
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+ render: shell
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+ validations:
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+ required: true
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+ - type: textarea
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+ id: impact
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+ attributes:
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+ label: User or system impact
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+ description: Latency, CPU, memory, write amplification, or token cost impact.
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+ validations:
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+ required: true
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+ - type: textarea
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+ id: acceptance
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+ attributes:
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+ label: Acceptance criteria
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+ description: What measurable improvement should close this issue?
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+ placeholder: |
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+ - [ ] ...
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+ - [ ] ...
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+ name: Refactor hotspot
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+ description: Capture a verified maintainability hotspot or cleanup seam.
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+ title: "[Refactor]: "
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+ labels: ["refactor"]
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+ body:
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+ - type: markdown
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+ attributes:
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+ value: |
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+ Use this for hotspots backed by concrete evidence, not just a large file or a vague smell.
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+ - type: textarea
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+ id: hotspot
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+ attributes:
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+ label: Hotspot summary
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+
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+ - type: textarea
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+ id: evidence
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+ attributes:
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+ label: Evidence of change pain
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+ validations:
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+ required: true
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+
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+ - type: textarea
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+ id: target
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+ attributes:
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+ label: Proposed refactor target
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+ description: What narrower seam or ownership change would reduce the cost?
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+ required: true
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+
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+ - type: textarea
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+ id: non_goals
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+ attributes:
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+ label: Non-goals
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+ description: What should not be expanded into this refactor?
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+ id: acceptance
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+ attributes:
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+ label: Acceptance criteria
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+ description: What will be simpler or safer after the refactor?
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+ placeholder: |
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+ - [ ] ...
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+ name: Repo rigor or automation issue
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+ description: Capture CI, release, governance, or workflow hardening work.
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+ title: "[Rigor]: "
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+ labels: ["rigor-uplift"]
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+ body:
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+ id: affected_surface
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+ - [ ] ...
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+ ## Summary
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+
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+ Describe the bug and the intended behavior after this fix.
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+
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+ ## Changes
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+
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+ -
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+
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+ ## Validation
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+
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+ Commands and checks run:
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+
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+ ```bash
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+ make release-smoke
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+ ```
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+
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+ Additional targeted validation:
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+
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+ -
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+
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+ ## Risk and compatibility
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+
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+ - User-visible behavior change:
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+ - Migration required:
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+ - Backward-compatibility risk:
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+
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+ ## Checklist
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+
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+ - [ ] Reproduction or regression coverage added or updated
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+ - [ ] Docs or examples updated if behavior changed
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+ - [ ] No unrelated changes included
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+ - [ ] Ready for review
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+ ## Summary
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+
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+ Describe the documentation gap and what this PR fixes.
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+
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+ ## Changes
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+
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+ -
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+
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+ ## Validation
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+
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+ Commands and checks run:
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+
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+ ```bash
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+ make docs
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+ ```
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+
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+ Additional targeted validation:
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+
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+ -
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+
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+ ## Documentation notes
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+
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+ - Affected audience:
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+ - Related code or workflows:
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+ - Follow-up docs needed:
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+
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+ ## Checklist
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+
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+ - [ ] Commands and examples were checked against the current repo
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+ - [ ] Screenshots or logs refreshed if needed
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+ - [ ] No unrelated source changes included
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+ - [ ] Ready for review
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+ ## Summary
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+
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+ Describe the user problem and the capability this change adds.
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+
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+ ## Changes
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+
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+ -
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+
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+ ## Validation
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+
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+ Commands and checks run:
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+
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+ ```bash
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+ make release-smoke
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+ ```
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+
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+ Additional targeted validation:
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+
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+ -
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+
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+ ## Scope and compatibility
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+
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+ - New surface area:
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+ - Follow-up work:
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+ - Breaking changes:
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+
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+ ## Checklist
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+
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+ - [ ] Tests or evals added or updated
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+ - [ ] Docs, examples, or starter flows updated
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+ - [ ] Compatibility notes included if needed
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+ - [ ] Ready for review
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+ ## Summary
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+
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+ Describe the hotspot or seam this refactor addresses.
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+
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+ ## Changes
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+
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+ -
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+
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+ ## Validation
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+
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+ Commands and checks run:
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+
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+ ```bash
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+ make release-smoke
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+ ```
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+
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+ Additional targeted validation:
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+
19
+ -
20
+
21
+ ## Refactor notes
22
+
23
+ - Verified hotspot or evidence:
24
+ - Non-goals:
25
+ - Behavior changes:
26
+
27
+ ## Checklist
28
+
29
+ - [ ] Existing behavior preserved or intentionally changed
30
+ - [ ] Tests updated where seams moved
31
+ - [ ] Docs updated if the public surface changed
32
+ - [ ] Ready for review
@@ -0,0 +1,32 @@
1
+ ## Summary
2
+
3
+ Describe the release, CI, governance, or automation change.
4
+
5
+ ## Changes
6
+
7
+ -
8
+
9
+ ## Validation
10
+
11
+ Commands and checks run:
12
+
13
+ ```bash
14
+ make release-smoke
15
+ ```
16
+
17
+ Additional targeted validation:
18
+
19
+ -
20
+
21
+ ## Release and enforcement notes
22
+
23
+ - Workflow or ruleset impact:
24
+ - Versioning impact:
25
+ - Secrets or trusted publishing impact:
26
+
27
+ ## Checklist
28
+
29
+ - [ ] Rulesets and checked-in workflow definitions stay aligned
30
+ - [ ] Release or CI docs updated if behavior changed
31
+ - [ ] Compatibility or rollout notes included
32
+ - [ ] Ready for review
@@ -0,0 +1,32 @@
1
+ ## Summary
2
+
3
+ Describe the security issue being addressed and the intended fixed behavior.
4
+
5
+ ## Changes
6
+
7
+ -
8
+
9
+ ## Validation
10
+
11
+ Commands and checks run:
12
+
13
+ ```bash
14
+ make release-smoke
15
+ ```
16
+
17
+ Additional targeted validation:
18
+
19
+ -
20
+
21
+ ## Security notes
22
+
23
+ - Affected trust boundary:
24
+ - Severity and impact:
25
+ - Disclosure or rollout considerations:
26
+
27
+ ## Checklist
28
+
29
+ - [ ] Safe proof or regression coverage added or updated
30
+ - [ ] Sensitive details handled appropriately
31
+ - [ ] Docs or operator guidance updated if needed
32
+ - [ ] Ready for review
@@ -0,0 +1,33 @@
1
+ ## Summary
2
+
3
+ Describe the problem and the intent of this change.
4
+
5
+ ## Changes
6
+
7
+ -
8
+
9
+ ## Validation
10
+
11
+ Commands and checks run:
12
+
13
+ ```bash
14
+ make release-smoke
15
+ ```
16
+
17
+ Additional targeted validation:
18
+
19
+ -
20
+
21
+ ## Risk and compatibility
22
+
23
+ - Breaking changes:
24
+ - Migration required:
25
+ - Performance impact:
26
+ - Security impact:
27
+
28
+ ## Checklist
29
+
30
+ - [ ] Tests or evals added or updated for behavior changes
31
+ - [ ] Docs updated if user-facing behavior changed
32
+ - [ ] No unrelated changes included
33
+ - [ ] Ready for review
@@ -0,0 +1,26 @@
1
+ changelog:
2
+ categories:
3
+ - title: Features
4
+ labels:
5
+ - enhancement
6
+ - multimodal
7
+ - retrieval
8
+ - dreaming
9
+ - evals
10
+ - plugin
11
+ - title: Architecture and Rigor
12
+ labels:
13
+ - architecture
14
+ - rigor-uplift
15
+ - title: Documentation
16
+ labels:
17
+ - documentation
18
+ - title: Fixes
19
+ labels:
20
+ - bug
21
+ exclude:
22
+ labels:
23
+ - question
24
+ - duplicate
25
+ - invalid
26
+ - wontfix
@@ -0,0 +1,44 @@
1
+ {
2
+ "name": "default-branch-release-grade",
3
+ "target": "branch",
4
+ "enforcement": "active",
5
+ "conditions": {
6
+ "ref_name": {
7
+ "include": ["~DEFAULT_BRANCH"],
8
+ "exclude": []
9
+ }
10
+ },
11
+ "rules": [
12
+ {
13
+ "type": "deletion"
14
+ },
15
+ {
16
+ "type": "non_fast_forward"
17
+ },
18
+ {
19
+ "type": "pull_request",
20
+ "parameters": {
21
+ "allowed_merge_methods": ["merge", "squash", "rebase"],
22
+ "dismiss_stale_reviews_on_push": true,
23
+ "require_code_owner_review": true,
24
+ "require_last_push_approval": true,
25
+ "required_approving_review_count": 1,
26
+ "required_review_thread_resolution": true
27
+ }
28
+ },
29
+ {
30
+ "type": "required_status_checks",
31
+ "parameters": {
32
+ "strict_required_status_checks_policy": true,
33
+ "required_status_checks": [
34
+ {
35
+ "context": "verify"
36
+ },
37
+ {
38
+ "context": "package-smoke"
39
+ }
40
+ ]
41
+ }
42
+ }
43
+ ]
44
+ }
@@ -0,0 +1,36 @@
1
+ name: release-please
2
+
3
+ "on":
4
+ push:
5
+ branches:
6
+ - main
7
+ workflow_dispatch:
8
+
9
+ permissions:
10
+ contents: write
11
+ issues: write
12
+ pull-requests: write
13
+
14
+ concurrency:
15
+ group: release-please-${{ github.ref }}
16
+ cancel-in-progress: false
17
+
18
+ jobs:
19
+ release-please:
20
+ runs-on: ubuntu-latest
21
+ env:
22
+ RELEASE_PLEASE_TOKEN: ${{ secrets.RELEASE_PLEASE_TOKEN }}
23
+ steps:
24
+ - name: Report missing token
25
+ if: ${{ env.RELEASE_PLEASE_TOKEN == '' }}
26
+ run: |
27
+ echo "::warning::RELEASE_PLEASE_TOKEN is not configured. Stable release initiation remains disabled until the token is added."
28
+
29
+ - name: Run release-please
30
+ if: ${{ env.RELEASE_PLEASE_TOKEN != '' }}
31
+ uses: googleapis/release-please-action@v4
32
+ with:
33
+ token: ${{ env.RELEASE_PLEASE_TOKEN }}
34
+ target-branch: main
35
+ config-file: release-please-config.json
36
+ manifest-file: .release-please-manifest.json