cellfinder 1.4.1__tar.gz → 1.5.1__tar.gz

{cellfinder-1.4.1 → cellfinder-1.5.1}/.github/workflows/test_and_deploy.yml

@@ -50,13 +50,13 @@ jobs:
       matrix:
         # Run all supported Python versions on linux
         os: [ubuntu-latest]
-        python-version: ["3.10", "3.11", "3.12"]
+        python-version: ["3.11", "3.12", "3.13"]
         # Include one windows and one macOS (arm based) run
         include:
           - os: macos-latest
-            python-version: "3.12"
+            python-version: "3.13"
           - os: windows-latest
-            python-version: "3.12"
+            python-version: "3.13"
 
     steps:
       - uses: actions/checkout@v4

{cellfinder-1.4.1 → cellfinder-1.5.1}/.github/workflows/test_include_guard.yaml

@@ -22,7 +22,7 @@ jobs:
       - name: Setup Python
         uses: actions/setup-python@v4
         with:
-          python-version: '3.12'
+          python-version: '3.13'
 
       - name: Install cellfinder via pip
         run: python -m pip install -e "."

{cellfinder-1.4.1 → cellfinder-1.5.1}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.2
 Name: cellfinder
-Version: 1.4.1
+Version: 1.5.1
 Summary: Automated 3D cell detection in large microscopy images
 Author-email: "Adam Tyson, Christian Niedworok, Charly Rousseau" <code@adamltyson.com>
 License: BSD-3-Clause
@@ -16,11 +16,11 @@ Classifier: Intended Audience :: Science/Research
 Classifier: Operating System :: OS Independent
 Classifier: Programming Language :: Python
 Classifier: Programming Language :: Python :: 3
-Classifier: Programming Language :: Python :: 3.10
 Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
 Classifier: Topic :: Scientific/Engineering :: Image Recognition
-Requires-Python: >=3.10
+Requires-Python: >=3.11
 Description-Content-Type: text/markdown
 License-File: LICENSE
 Requires-Dist: brainglobe-utils>=0.5.0
@@ -36,6 +36,7 @@ Requires-Dist: keras>=3.7.0
 Requires-Dist: torch!=2.4,>=2.1.0
 Requires-Dist: tifffile
 Requires-Dist: tqdm
+Requires-Dist: qt-niu
 Provides-Extra: dev
 Requires-Dist: black; extra == "dev"
 Requires-Dist: pre-commit; extra == "dev"

{cellfinder-1.4.1 → cellfinder-1.5.1}/cellfinder/napari/curation.py

@@ -8,11 +8,11 @@ from brainglobe_napari_io.cellfinder.utils import convert_layer_to_cells
 from brainglobe_utils.cells.cells import Cell
 from brainglobe_utils.general.system import delete_directory_contents
 from brainglobe_utils.IO.yaml import save_yaml
-from brainglobe_utils.qtpy.dialog import display_warning
-from brainglobe_utils.qtpy.interaction import add_button, add_combobox
 from magicgui.widgets import ProgressBar
 from napari.qt.threading import thread_worker
 from napari.utils.notifications import show_info
+from qt_niu.dialog import display_warning
+from qt_niu.interaction import add_button, add_combobox
 from qtpy import QtCore
 from qtpy.QtWidgets import (
     QComboBox,

{cellfinder-1.4.1 → cellfinder-1.5.1}/cellfinder.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.2
 Name: cellfinder
-Version: 1.4.1
+Version: 1.5.1
 Summary: Automated 3D cell detection in large microscopy images
 Author-email: "Adam Tyson, Christian Niedworok, Charly Rousseau" <code@adamltyson.com>
 License: BSD-3-Clause
@@ -16,11 +16,11 @@ Classifier: Intended Audience :: Science/Research
 Classifier: Operating System :: OS Independent
 Classifier: Programming Language :: Python
 Classifier: Programming Language :: Python :: 3
-Classifier: Programming Language :: Python :: 3.10
 Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
 Classifier: Topic :: Scientific/Engineering :: Image Recognition
-Requires-Python: >=3.10
+Requires-Python: >=3.11
 Description-Content-Type: text/markdown
 License-File: LICENSE
 Requires-Dist: brainglobe-utils>=0.5.0
@@ -36,6 +36,7 @@ Requires-Dist: keras>=3.7.0
 Requires-Dist: torch!=2.4,>=2.1.0
 Requires-Dist: tifffile
 Requires-Dist: tqdm
+Requires-Dist: qt-niu
 Provides-Extra: dev
 Requires-Dist: black; extra == "dev"
 Requires-Dist: pre-commit; extra == "dev"

{cellfinder-1.4.1 → cellfinder-1.5.1}/cellfinder.egg-info/requires.txt

@@ -11,6 +11,7 @@ keras>=3.7.0
 torch!=2.4,>=2.1.0
 tifffile
 tqdm
+qt-niu
 
 [dev]
 black

{cellfinder-1.4.1 → cellfinder-1.5.1}/pyproject.toml

@@ -14,12 +14,12 @@ classifiers = [
     "Operating System :: OS Independent",
     "Programming Language :: Python",
     "Programming Language :: Python :: 3",
-    "Programming Language :: Python :: 3.10",
     "Programming Language :: Python :: 3.11",
     "Programming Language :: Python :: 3.12",
+    "Programming Language :: Python :: 3.13",
     "Topic :: Scientific/Engineering :: Image Recognition",
 ]
-requires-python = ">=3.10"
+requires-python = ">=3.11"
 dependencies = [
     "brainglobe-utils>=0.5.0",
     "brainglobe-napari-io>=0.3.4",
@@ -34,6 +34,7 @@ dependencies = [
     "torch>=2.1.0,!=2.4",
     "tifffile",
     "tqdm",
+    "qt-niu"
 ]
 dynamic = ["version"]
 
@@ -80,7 +81,7 @@ requires = ["setuptools>=45", "wheel", "setuptools_scm[toml]>=6.2"]
 build-backend = 'setuptools.build_meta'
 
 [tool.black]
-target-version = ['py310','py311', 'py312']
+target-version = ['py311','py312', 'py313']
 skip-string-normalization = false
 line-length = 79
 
@@ -112,14 +113,14 @@ markers = ["slow: marks tests as slow (deselect with '-m \"not slow\"')"]
 legacy_tox_ini = """
 # For more information about tox, see https://tox.readthedocs.io/en/latest/
 [tox]
-envlist = py{310,311,312}
+envlist = py{311,312,313}
 isolated_build = true
 
 [gh-actions]
 python =
-    3.10: py310
     3.11: py311
     3.12: py312
+    3.13: py313
 
 [testenv]
 commands = python -m pytest -v --color=yes --cov=cellfinder --cov-report=xml