PyPI - cellfinder - Versions diffs - 1.4.0__tar.gz → 1.4.1__tar.gz - Mend

@@ -266,22 +266,21 @@ class BallFilter:
         """
         if self.volume.shape[0]:
             if self.volume.shape[0] < self.kernel_z_size:
-                num_remaining_with_padding = 0
+                num_remaining_with_padding = self.volume.shape[0]
             else:
                 num_remaining = self.kernel_z_size - (self.middle_z_idx + 1)
                 num_remaining_with_padding = num_remaining + self.middle_z_idx
+            remaining_start = self.volume.shape[0] - num_remaining_with_padding
             self.volume = torch.cat(
-                [self.volume[-num_remaining_with_padding:, :, :], planes],
+                [self.volume[remaining_start:, :, :], planes],
                 dim=0,
             )
             if self.inside_brain_tiles is not None:
                 self.inside_brain_tiles = torch.cat(
                     [
-                        self.inside_brain_tiles[
-                            -num_remaining_with_padding:, :, :
-                        ],
+                        self.inside_brain_tiles[remaining_start:, :, :],
                         masks,
                     ],
                     dim=0,

@@ -199,6 +199,11 @@ jobs:
     if: github.event_name == 'push' && github.ref_type == 'tag'
     runs-on: ubuntu-latest
     steps:
-    - uses: neuroinformatics-unit/actions/upload_pypi@v2
+    - uses: actions/download-artifact@v4
       with:
-        secret-pypi-key: ${{ secrets.TWINE_API_KEY }}
+        name: artifact
+        path: dist
+    - uses: pypa/gh-action-pypi-publish@release/v1
+      with:
+        user: __token__
+        password: ${{ secrets.TWINE_API_KEY }}

@@ -1,6 +1,6 @@
 Metadata-Version: 2.2
 Name: cellfinder
-Version: 1.4.0
+Version: 1.4.1
 Summary: Automated 3D cell detection in large microscopy images
 Author-email: "Adam Tyson, Christian Niedworok, Charly Rousseau" <code@adamltyson.com>
 License: BSD-3-Clause

@@ -38,7 +38,7 @@ MIN_PLANES_ANALYSE = 0
 def get_heavy_widgets(
-    options: Dict[str, Any]
+    options: Dict[str, Any],
 ) -> Tuple[Callable, Callable, Callable]:
     # signal and other input are separated out from the main magicgui
     # parameter selections and are inserted as widget children in their own

@@ -1,6 +1,6 @@
 Metadata-Version: 2.2
 Name: cellfinder
-Version: 1.4.0
+Version: 1.4.1
 Summary: Automated 3D cell detection in large microscopy images
 Author-email: "Adam Tyson, Christian Niedworok, Charly Rousseau" <code@adamltyson.com>
 License: BSD-3-Clause

cellfinder 1.4.0tar.gz → 1.4.1tar.gz