cellfinder 1.3.1__tar.gz → 1.3.2__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (70) hide show
  1. {cellfinder-1.3.1 → cellfinder-1.3.2}/PKG-INFO +2 -2
  2. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/napari/curation.py +2 -2
  3. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder.egg-info/PKG-INFO +2 -2
  4. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder.egg-info/requires.txt +1 -1
  5. {cellfinder-1.3.1 → cellfinder-1.3.2}/pyproject.toml +1 -1
  6. {cellfinder-1.3.1 → cellfinder-1.3.2}/.github/workflows/test_and_deploy.yml +0 -0
  7. {cellfinder-1.3.1 → cellfinder-1.3.2}/.github/workflows/test_include_guard.yaml +0 -0
  8. {cellfinder-1.3.1 → cellfinder-1.3.2}/.gitignore +0 -0
  9. {cellfinder-1.3.1 → cellfinder-1.3.2}/.napari/config.yml +0 -0
  10. {cellfinder-1.3.1 → cellfinder-1.3.2}/CITATION.cff +0 -0
  11. {cellfinder-1.3.1 → cellfinder-1.3.2}/LICENSE +0 -0
  12. {cellfinder-1.3.1 → cellfinder-1.3.2}/MANIFEST.in +0 -0
  13. {cellfinder-1.3.1 → cellfinder-1.3.2}/README.md +0 -0
  14. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/__init__.py +0 -0
  15. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/cli_migration_warning.py +0 -0
  16. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/core/__init__.py +0 -0
  17. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/core/classify/__init__.py +0 -0
  18. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/core/classify/augment.py +0 -0
  19. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/core/classify/classify.py +0 -0
  20. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/core/classify/cube_generator.py +0 -0
  21. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/core/classify/resnet.py +0 -0
  22. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/core/classify/tools.py +0 -0
  23. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/core/config/__init__.py +0 -0
  24. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/core/config/cellfinder.conf +0 -0
  25. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/core/detect/__init__.py +0 -0
  26. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/core/detect/detect.py +0 -0
  27. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/core/detect/filters/__init__.py +0 -0
  28. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/core/detect/filters/plane/__init__.py +0 -0
  29. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/core/detect/filters/plane/classical_filter.py +0 -0
  30. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/core/detect/filters/plane/plane_filter.py +0 -0
  31. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/core/detect/filters/plane/tile_walker.py +0 -0
  32. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/core/detect/filters/setup_filters.py +0 -0
  33. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/core/detect/filters/volume/__init__.py +0 -0
  34. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/core/detect/filters/volume/ball_filter.py +0 -0
  35. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/core/detect/filters/volume/structure_detection.py +0 -0
  36. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/core/detect/filters/volume/structure_splitting.py +0 -0
  37. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/core/detect/filters/volume/volume_filter.py +0 -0
  38. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/core/download/__init__.py +0 -0
  39. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/core/download/cli.py +0 -0
  40. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/core/download/download.py +0 -0
  41. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/core/main.py +0 -0
  42. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/core/tools/__init__.py +0 -0
  43. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/core/tools/array_operations.py +0 -0
  44. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/core/tools/geometry.py +0 -0
  45. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/core/tools/image_processing.py +0 -0
  46. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/core/tools/prep.py +0 -0
  47. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/core/tools/source_files.py +0 -0
  48. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/core/tools/system.py +0 -0
  49. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/core/tools/tiff.py +0 -0
  50. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/core/tools/tools.py +0 -0
  51. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/core/train/__init__.py +0 -0
  52. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/core/train/train_yml.py +0 -0
  53. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/core/types.py +0 -0
  54. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/napari/__init__.py +0 -0
  55. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/napari/detect/__init__.py +0 -0
  56. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/napari/detect/detect.py +0 -0
  57. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/napari/detect/detect_containers.py +0 -0
  58. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/napari/detect/thread_worker.py +0 -0
  59. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/napari/input_container.py +0 -0
  60. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/napari/napari.yaml +0 -0
  61. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/napari/sample_data.py +0 -0
  62. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/napari/train/__init__.py +0 -0
  63. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/napari/train/train.py +0 -0
  64. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/napari/train/train_containers.py +0 -0
  65. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/napari/utils.py +0 -0
  66. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder.egg-info/SOURCES.txt +0 -0
  67. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder.egg-info/dependency_links.txt +0 -0
  68. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder.egg-info/entry_points.txt +0 -0
  69. {cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder.egg-info/top_level.txt +0 -0
  70. {cellfinder-1.3.1 → cellfinder-1.3.2}/setup.cfg +0 -0
{cellfinder-1.3.1 → cellfinder-1.3.2}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: cellfinder
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- Version: 1.3.1
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+ Version: 1.3.2
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  Summary: Automated 3D cell detection in large microscopy images
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  Author-email: "Adam Tyson, Christian Niedworok, Charly Rousseau" <code@adamltyson.com>
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  License: BSD-3-Clause
@@ -29,7 +29,7 @@ Requires-Dist: dask[array]
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  Requires-Dist: fancylog>=0.0.7
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  Requires-Dist: natsort
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  Requires-Dist: numba
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- Requires-Dist: numpy
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+ Requires-Dist: numpy<2
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  Requires-Dist: scikit-image
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  Requires-Dist: scikit-learn
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  Requires-Dist: keras>=3.0.0
{cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder/napari/curation.py RENAMED
@@ -113,7 +113,7 @@ class CurationWidget(QWidget):
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  layer_names = [
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  layer.name
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  for layer in self.viewer.layers
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- if type(layer) == layer_type
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+ if isinstance(layer, layer_type)
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  ]
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  if layer_names:
@@ -329,7 +329,7 @@ class CurationWidget(QWidget):
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  if len(self.viewer.layers.selection) == 1:
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  layer = list(self.viewer.layers.selection)[0]
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- if type(layer) == napari.layers.Points:
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+ if isinstance(layer, napari.layers.Points):
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  if len(layer.data) > 0:
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  if point_type == "cell":
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  destination_layer = self.training_data_cell_layer
{cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: cellfinder
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- Version: 1.3.1
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+ Version: 1.3.2
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  Summary: Automated 3D cell detection in large microscopy images
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  Author-email: "Adam Tyson, Christian Niedworok, Charly Rousseau" <code@adamltyson.com>
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  License: BSD-3-Clause
@@ -29,7 +29,7 @@ Requires-Dist: dask[array]
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  Requires-Dist: fancylog>=0.0.7
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  Requires-Dist: natsort
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  Requires-Dist: numba
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- Requires-Dist: numpy
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+ Requires-Dist: numpy<2
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  Requires-Dist: scikit-image
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  Requires-Dist: scikit-learn
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  Requires-Dist: keras>=3.0.0
{cellfinder-1.3.1 → cellfinder-1.3.2}/cellfinder.egg-info/requires.txt RENAMED
@@ -4,7 +4,7 @@ dask[array]
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  fancylog>=0.0.7
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  natsort
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  numba
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- numpy
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+ numpy<2
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  scikit-image
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  scikit-learn
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  keras>=3.0.0
{cellfinder-1.3.1 → cellfinder-1.3.2}/pyproject.toml RENAMED
@@ -27,7 +27,7 @@ dependencies = [
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  "fancylog>=0.0.7",
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  "natsort",
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  "numba",
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- "numpy",
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+ "numpy<2",
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  "scikit-image",
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  "scikit-learn",
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  "keras>=3.0.0",
{cellfinder-1.3.1 → cellfinder-1.3.2}/.gitignore RENAMED
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{cellfinder-1.3.1 → cellfinder-1.3.2}/CITATION.cff RENAMED
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{cellfinder-1.3.1 → cellfinder-1.3.2}/LICENSE RENAMED
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{cellfinder-1.3.1 → cellfinder-1.3.2}/MANIFEST.in RENAMED
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{cellfinder-1.3.1 → cellfinder-1.3.2}/README.md RENAMED
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{cellfinder-1.3.1 → cellfinder-1.3.2}/setup.cfg RENAMED
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