cellfinder 1.1.2__tar.gz → 1.1.3__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Potentially problematic release.

This version of cellfinder might be problematic. Click here for more details.

Files changed (74) hide show
  1. {cellfinder-1.1.2 → cellfinder-1.1.3}/PKG-INFO +1 -1
  2. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/download/download.py +4 -0
  3. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder.egg-info/PKG-INFO +1 -1
  4. {cellfinder-1.1.2 → cellfinder-1.1.3}/.github/workflows/test_and_deploy.yml +0 -0
  5. {cellfinder-1.1.2 → cellfinder-1.1.3}/.github/workflows/test_include_guard.yaml +0 -0
  6. {cellfinder-1.1.2 → cellfinder-1.1.3}/.gitignore +0 -0
  7. {cellfinder-1.1.2 → cellfinder-1.1.3}/.napari/config.yml +0 -0
  8. {cellfinder-1.1.2 → cellfinder-1.1.3}/CITATION.cff +0 -0
  9. {cellfinder-1.1.2 → cellfinder-1.1.3}/LICENSE +0 -0
  10. {cellfinder-1.1.2 → cellfinder-1.1.3}/MANIFEST.in +0 -0
  11. {cellfinder-1.1.2 → cellfinder-1.1.3}/README.md +0 -0
  12. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/__init__.py +0 -0
  13. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/cli_migration_warning.py +0 -0
  14. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/__init__.py +0 -0
  15. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/classify/__init__.py +0 -0
  16. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/classify/augment.py +0 -0
  17. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/classify/classify.py +0 -0
  18. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/classify/cube_generator.py +0 -0
  19. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/classify/resnet.py +0 -0
  20. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/classify/tools.py +0 -0
  21. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/config/__init__.py +0 -0
  22. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/config/cellfinder.conf +0 -0
  23. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/detect/__init__.py +0 -0
  24. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/detect/detect.py +0 -0
  25. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/detect/filters/__init__.py +0 -0
  26. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/detect/filters/plane/__init__.py +0 -0
  27. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/detect/filters/plane/classical_filter.py +0 -0
  28. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/detect/filters/plane/plane_filter.py +0 -0
  29. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/detect/filters/plane/tile_walker.py +0 -0
  30. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/detect/filters/setup_filters.py +0 -0
  31. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/detect/filters/volume/__init__.py +0 -0
  32. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/detect/filters/volume/ball_filter.py +0 -0
  33. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/detect/filters/volume/structure_detection.py +0 -0
  34. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/detect/filters/volume/structure_splitting.py +0 -0
  35. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/detect/filters/volume/volume_filter.py +0 -0
  36. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/download/__init__.py +0 -0
  37. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/download/cli.py +0 -0
  38. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/download/models.py +0 -0
  39. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/main.py +0 -0
  40. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/tools/IO.py +0 -0
  41. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/tools/__init__.py +0 -0
  42. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/tools/array_operations.py +0 -0
  43. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/tools/geometry.py +0 -0
  44. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/tools/image_processing.py +0 -0
  45. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/tools/prep.py +0 -0
  46. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/tools/source_files.py +0 -0
  47. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/tools/system.py +0 -0
  48. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/tools/tf.py +0 -0
  49. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/tools/tiff.py +0 -0
  50. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/tools/tools.py +0 -0
  51. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/train/__init__.py +0 -0
  52. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/train/train_yml.py +0 -0
  53. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/types.py +0 -0
  54. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/napari/__init__.py +0 -0
  55. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/napari/curation.py +0 -0
  56. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/napari/detect/__init__.py +0 -0
  57. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/napari/detect/detect.py +0 -0
  58. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/napari/detect/detect_containers.py +0 -0
  59. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/napari/detect/thread_worker.py +0 -0
  60. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/napari/images/brainglobe.png +0 -0
  61. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/napari/input_container.py +0 -0
  62. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/napari/napari.yaml +0 -0
  63. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/napari/sample_data.py +0 -0
  64. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/napari/train/__init__.py +0 -0
  65. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/napari/train/train.py +0 -0
  66. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/napari/train/train_containers.py +0 -0
  67. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/napari/utils.py +0 -0
  68. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder.egg-info/SOURCES.txt +0 -0
  69. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder.egg-info/dependency_links.txt +0 -0
  70. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder.egg-info/entry_points.txt +0 -0
  71. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder.egg-info/requires.txt +0 -0
  72. {cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder.egg-info/top_level.txt +0 -0
  73. {cellfinder-1.1.2 → cellfinder-1.1.3}/pyproject.toml +0 -0
  74. {cellfinder-1.1.2 → cellfinder-1.1.3}/setup.cfg +0 -0
{cellfinder-1.1.2 → cellfinder-1.1.3}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: cellfinder
3
- Version: 1.1.2
3
+ Version: 1.1.3
4
4
  Summary: Automated 3D cell detection in large microscopy images
5
5
  Author-email: "Adam Tyson, Christian Niedworok, Charly Rousseau" <code@adamltyson.com>
6
6
  License: BSD-3-Clause
{cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder/core/download/download.py RENAMED
@@ -2,6 +2,7 @@ import os
2
2
  import shutil
3
3
  import tarfile
4
4
  import urllib.request
5
+ from pathlib import Path
5
6
 
6
7
  from brainglobe_utils.general.config import get_config_obj
7
8
  from brainglobe_utils.general.system import disk_free_gb
@@ -124,5 +125,8 @@ def write_model_to_config(new_model_path, orig_config, custom_config):
124
125
  data[i] = line.replace(
125
126
  f"model_path = '{orig_path}", f"model_path = '{new_model_path}"
126
127
  )
128
+
129
+ custom_config_path = Path(custom_config)
130
+ custom_config_path.parent.mkdir(parents=True, exist_ok=True)
127
131
  with open(custom_config, "w") as out_conf:
128
132
  out_conf.writelines(data)
{cellfinder-1.1.2 → cellfinder-1.1.3}/cellfinder.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: cellfinder
3
- Version: 1.1.2
3
+ Version: 1.1.3
4
4
  Summary: Automated 3D cell detection in large microscopy images
5
5
  Author-email: "Adam Tyson, Christian Niedworok, Charly Rousseau" <code@adamltyson.com>
6
6
  License: BSD-3-Clause
{cellfinder-1.1.2 → cellfinder-1.1.3}/.gitignore RENAMED
File without changes
{cellfinder-1.1.2 → cellfinder-1.1.3}/CITATION.cff RENAMED
File without changes
{cellfinder-1.1.2 → cellfinder-1.1.3}/LICENSE RENAMED
File without changes
{cellfinder-1.1.2 → cellfinder-1.1.3}/MANIFEST.in RENAMED
File without changes
{cellfinder-1.1.2 → cellfinder-1.1.3}/README.md RENAMED
File without changes
{cellfinder-1.1.2 → cellfinder-1.1.3}/pyproject.toml RENAMED
File without changes
{cellfinder-1.1.2 → cellfinder-1.1.3}/setup.cfg RENAMED
File without changes