cellects 0.3.7__tar.gz → 0.3.9__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (63) hide show
  1. {cellects-0.3.7 → cellects-0.3.9}/PKG-INFO +6 -3
  2. {cellects-0.3.7 → cellects-0.3.9}/README.md +5 -2
  3. {cellects-0.3.7 → cellects-0.3.9}/pyproject.toml +1 -1
  4. {cellects-0.3.7 → cellects-0.3.9}/src/cellects/__main__.py +17 -11
  5. cellects-0.3.9/src/cellects/icons/cellects_icon.png +0 -0
  6. {cellects-0.3.7 → cellects-0.3.9}/src/cellects.egg-info/PKG-INFO +6 -3
  7. {cellects-0.3.7 → cellects-0.3.9}/src/cellects.egg-info/SOURCES.txt +1 -0
  8. {cellects-0.3.7 → cellects-0.3.9}/LICENSE +0 -0
  9. {cellects-0.3.7 → cellects-0.3.9}/setup.cfg +0 -0
  10. {cellects-0.3.7 → cellects-0.3.9}/src/cellects/__init__.py +0 -0
  11. {cellects-0.3.7 → cellects-0.3.9}/src/cellects/config/__init__.py +0 -0
  12. {cellects-0.3.7 → cellects-0.3.9}/src/cellects/config/all_vars_dict.py +0 -0
  13. {cellects-0.3.7 → cellects-0.3.9}/src/cellects/core/__init__.py +0 -0
  14. {cellects-0.3.7 → cellects-0.3.9}/src/cellects/core/cellects_paths.py +0 -0
  15. {cellects-0.3.7 → cellects-0.3.9}/src/cellects/core/cellects_threads.py +0 -0
  16. {cellects-0.3.7 → cellects-0.3.9}/src/cellects/core/motion_analysis.py +0 -0
  17. {cellects-0.3.7 → cellects-0.3.9}/src/cellects/core/one_image_analysis.py +0 -0
  18. {cellects-0.3.7 → cellects-0.3.9}/src/cellects/core/program_organizer.py +0 -0
  19. {cellects-0.3.7 → cellects-0.3.9}/src/cellects/core/script_based_run.py +0 -0
  20. {cellects-0.3.7 → cellects-0.3.9}/src/cellects/gui/__init__.py +0 -0
  21. {cellects-0.3.7 → cellects-0.3.9}/src/cellects/gui/advanced_parameters.py +0 -0
  22. {cellects-0.3.7 → cellects-0.3.9}/src/cellects/gui/cellects.py +0 -0
  23. {cellects-0.3.7 → cellects-0.3.9}/src/cellects/gui/custom_widgets.py +0 -0
  24. {cellects-0.3.7 → cellects-0.3.9}/src/cellects/gui/first_window.py +0 -0
  25. {cellects-0.3.7 → cellects-0.3.9}/src/cellects/gui/if_several_folders_window.py +0 -0
  26. {cellects-0.3.7 → cellects-0.3.9}/src/cellects/gui/image_analysis_window.py +0 -0
  27. {cellects-0.3.7 → cellects-0.3.9}/src/cellects/gui/required_output.py +0 -0
  28. {cellects-0.3.7 → cellects-0.3.9}/src/cellects/gui/ui_strings.py +0 -0
  29. {cellects-0.3.7 → cellects-0.3.9}/src/cellects/gui/video_analysis_window.py +0 -0
  30. {cellects-0.3.7 → cellects-0.3.9}/src/cellects/icons/__init__.py +0 -0
  31. {cellects-0.3.7 → cellects-0.3.9}/src/cellects/icons/cellects_icon.icns +0 -0
  32. {cellects-0.3.7 → cellects-0.3.9}/src/cellects/icons/cellects_icon.ico +0 -0
  33. {cellects-0.3.7 → cellects-0.3.9}/src/cellects/image_analysis/__init__.py +0 -0
  34. {cellects-0.3.7 → cellects-0.3.9}/src/cellects/image_analysis/cell_leaving_detection.py +0 -0
  35. {cellects-0.3.7 → cellects-0.3.9}/src/cellects/image_analysis/image_segmentation.py +0 -0
  36. {cellects-0.3.7 → cellects-0.3.9}/src/cellects/image_analysis/morphological_operations.py +0 -0
  37. {cellects-0.3.7 → cellects-0.3.9}/src/cellects/image_analysis/network_functions.py +0 -0
  38. {cellects-0.3.7 → cellects-0.3.9}/src/cellects/image_analysis/one_image_analysis_threads.py +0 -0
  39. {cellects-0.3.7 → cellects-0.3.9}/src/cellects/image_analysis/oscillations_functions.py +0 -0
  40. {cellects-0.3.7 → cellects-0.3.9}/src/cellects/image_analysis/progressively_add_distant_shapes.py +0 -0
  41. {cellects-0.3.7 → cellects-0.3.9}/src/cellects/image_analysis/shape_descriptors.py +0 -0
  42. {cellects-0.3.7 → cellects-0.3.9}/src/cellects/utils/__init__.py +0 -0
  43. {cellects-0.3.7 → cellects-0.3.9}/src/cellects/utils/decorators.py +0 -0
  44. {cellects-0.3.7 → cellects-0.3.9}/src/cellects/utils/formulas.py +0 -0
  45. {cellects-0.3.7 → cellects-0.3.9}/src/cellects/utils/load_display_save.py +0 -0
  46. {cellects-0.3.7 → cellects-0.3.9}/src/cellects/utils/utilitarian.py +0 -0
  47. {cellects-0.3.7 → cellects-0.3.9}/src/cellects.egg-info/dependency_links.txt +0 -0
  48. {cellects-0.3.7 → cellects-0.3.9}/src/cellects.egg-info/entry_points.txt +0 -0
  49. {cellects-0.3.7 → cellects-0.3.9}/src/cellects.egg-info/requires.txt +0 -0
  50. {cellects-0.3.7 → cellects-0.3.9}/src/cellects.egg-info/top_level.txt +0 -0
  51. {cellects-0.3.7 → cellects-0.3.9}/tests/test_based_run.py +0 -0
  52. {cellects-0.3.7 → cellects-0.3.9}/tests/test_cell_leaving_detection.py +0 -0
  53. {cellects-0.3.7 → cellects-0.3.9}/tests/test_formulas.py +0 -0
  54. {cellects-0.3.7 → cellects-0.3.9}/tests/test_image_segmentation.py +0 -0
  55. {cellects-0.3.7 → cellects-0.3.9}/tests/test_load_display_save.py +0 -0
  56. {cellects-0.3.7 → cellects-0.3.9}/tests/test_morphological_operations.py +0 -0
  57. {cellects-0.3.7 → cellects-0.3.9}/tests/test_motion_analysis.py +0 -0
  58. {cellects-0.3.7 → cellects-0.3.9}/tests/test_network_functions.py +0 -0
  59. {cellects-0.3.7 → cellects-0.3.9}/tests/test_one_image_analysis.py +0 -0
  60. {cellects-0.3.7 → cellects-0.3.9}/tests/test_program_organizer.py +0 -0
  61. {cellects-0.3.7 → cellects-0.3.9}/tests/test_progressively_add_distant_shapes.py +0 -0
  62. {cellects-0.3.7 → cellects-0.3.9}/tests/test_shape_descriptors.py +0 -0
  63. {cellects-0.3.7 → cellects-0.3.9}/tests/test_utilitarian.py +0 -0
{cellects-0.3.7 → cellects-0.3.9}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.2
2
2
  Name: cellects
3
- Version: 0.3.7
3
+ Version: 0.3.9
4
4
  Summary: Cell Expansion Computer Tracking Software.
5
5
  Author: Aurèle Boussard
6
6
  License: GNU GENERAL PUBLIC LICENSE
@@ -725,12 +725,13 @@ Requires-Dist: mkdocs-jupyter; extra == "doc"
725
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  Cellects: Cell Expansion Computer Tracking Software
726
726
  </h1>
727
727
 
728
+ [![Windows Installer](https://img.shields.io/github/v/release/Aurele-B/Cellects?label=Windows%20Installer&logo=windows&color=blue)](https://github.com/Aurele-B/Cellects/releases/latest/)
729
+ [![macOS Installer](https://img.shields.io/github/v/release/Aurele-B/Cellects?label=macOS%20Installer&logo=apple&color=black)](https://github.com/Aurele-B/Cellects/releases/latest)
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  [![PyPI version](https://img.shields.io/pypi/v/cellects.svg?style=flat-square)](https://pypi.org/project/cellects/)
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  ![PyPI - Downloads](https://img.shields.io/pypi/dm/cellects)
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  [![Python versions](https://img.shields.io/pypi/pyversions/cellects.svg?style=flat-square)](https://pypi.org/project/cellects/)
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  [![License](https://img.shields.io/pypi/l/cellects.svg?style=flat-square)](https://github.com/Aurele-B/cellects/blob/main/LICENSE)
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  [![Stars](https://img.shields.io/github/stars/Aurele-B/cellects.svg?style=flat-square)](https://github.com/Aurele-B/cellects/stargazers)
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- ![GitHub Actions Workflow Status](https://img.shields.io/github/actions/workflow/status/Aurele-B/Cellects/.github%2Fworkflows%2Frelease.yml)
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  ![Coverage](https://raw.githubusercontent.com/Aurele-B/cellects/gh-pages/badges/coverage.svg)
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  Description
@@ -749,7 +750,9 @@ easy installation and user-friendly interface.
749
750
  ---
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751
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  ## Installation (Short version)
752
- Install using our Windows installer: [Cellects_installer.exe](https://github.com/Aurele-B/Cellects/releases/)
753
+ Install using our installers:
754
+ - Windows: [Cellects-x.x.x-setup.exe](https://github.com/Aurele-B/Cellects/releases/)
755
+ - macOS: [Cellects-x.x.x-setup.dmg](https://github.com/Aurele-B/Cellects/releases/)
753
756
 
754
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  Or, install via pip:
755
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  ```bash
{cellects-0.3.7 → cellects-0.3.9}/README.md RENAMED
@@ -5,12 +5,13 @@
5
5
  Cellects: Cell Expansion Computer Tracking Software
6
6
  </h1>
7
7
 
8
+ [![Windows Installer](https://img.shields.io/github/v/release/Aurele-B/Cellects?label=Windows%20Installer&logo=windows&color=blue)](https://github.com/Aurele-B/Cellects/releases/latest/)
9
+ [![macOS Installer](https://img.shields.io/github/v/release/Aurele-B/Cellects?label=macOS%20Installer&logo=apple&color=black)](https://github.com/Aurele-B/Cellects/releases/latest)
8
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  [![PyPI version](https://img.shields.io/pypi/v/cellects.svg?style=flat-square)](https://pypi.org/project/cellects/)
9
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  ![PyPI - Downloads](https://img.shields.io/pypi/dm/cellects)
10
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  [![Python versions](https://img.shields.io/pypi/pyversions/cellects.svg?style=flat-square)](https://pypi.org/project/cellects/)
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  [![License](https://img.shields.io/pypi/l/cellects.svg?style=flat-square)](https://github.com/Aurele-B/cellects/blob/main/LICENSE)
12
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  [![Stars](https://img.shields.io/github/stars/Aurele-B/cellects.svg?style=flat-square)](https://github.com/Aurele-B/cellects/stargazers)
13
- ![GitHub Actions Workflow Status](https://img.shields.io/github/actions/workflow/status/Aurele-B/Cellects/.github%2Fworkflows%2Frelease.yml)
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  ![Coverage](https://raw.githubusercontent.com/Aurele-B/cellects/gh-pages/badges/coverage.svg)
15
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16
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  Description
@@ -29,7 +30,9 @@ easy installation and user-friendly interface.
29
30
  ---
30
31
 
31
32
  ## Installation (Short version)
32
- Install using our Windows installer: [Cellects_installer.exe](https://github.com/Aurele-B/Cellects/releases/)
33
+ Install using our installers:
34
+ - Windows: [Cellects-x.x.x-setup.exe](https://github.com/Aurele-B/Cellects/releases/)
35
+ - macOS: [Cellects-x.x.x-setup.dmg](https://github.com/Aurele-B/Cellects/releases/)
33
36
 
34
37
  Or, install via pip:
35
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  ```bash
{cellects-0.3.7 → cellects-0.3.9}/pyproject.toml RENAMED
@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
4
4
 
5
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  [project]
6
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  name = "cellects"
7
- version = "0.3.7"
7
+ version = "0.3.9"
8
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  description = "Cell Expansion Computer Tracking Software."
9
9
  readme = "README.md"
10
10
  license = { file = "LICENSE" }
{cellects-0.3.7 → cellects-0.3.9}/src/cellects/__main__.py RENAMED
@@ -12,15 +12,31 @@ import coloredlogs
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  from PySide6 import QtWidgets, QtGui
13
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  from pathlib import Path
14
14
 
15
+
16
+ def get_icon_path():
17
+ if hasattr(sys, "_MEIPASS"):
18
+ return Path(sys._MEIPASS) / "icons"
19
+ return Path(__file__).parent / "icons"
20
+
21
+
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+ ICON_DIR = get_icon_path()
23
+
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+
15
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  if sys.platform.startswith('win'):
16
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  try:
17
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  import ctypes
18
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  ctypes.windll.shell32.SetCurrentProcessExplicitAppUserModelID("cellects.app")
19
29
  except Exception as e:
20
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  logging.getLogger(__name__).debug(f"Windows taskbar icon setup failed: {e}")
31
+ icon_path = ICON_DIR / "cellects_icon.ico"
32
+ elif sys.platform == "darwin":
33
+ icon_path = ICON_DIR / "cellects_icon.icns"
34
+ else:
35
+ icon_path = ICON_DIR / "cellects_icon.png"
21
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22
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  LOGLEVEL = "INFO" # Set to DEBUG for development
23
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39
+
24
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  def _initialize_coloredlogs(loglevel: str = 'DEBUG') -> None:
25
41
 
26
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  """Initialize colored console logging with custom format.
@@ -67,17 +83,7 @@ def run_cellects():
67
83
  app = QtWidgets.QApplication([])
68
84
 
69
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  # Set custom window icon for taskbar (platform-specific handling)
70
- icon = QtGui.QIcon()
71
- if hasattr(sys, "_MEIPASS"):
72
- ICONS_DIR = Path(sys._MEIPASS) / "icons"
73
- else:
74
- ICONS_DIR = Path(__file__).parent / "icons"
75
- platform_icon_path = (
76
- ICONS_DIR / "cellects_icon.ico" if sys.platform.startswith('win')
77
- else ICONS_DIR / "cellects_icon.icns"
78
- )
79
- icon.addPixmap(QtGui.QPixmap(str(platform_icon_path)))
80
- app.setWindowIcon(icon)
86
+ app.setWindowIcon(QtGui.QIcon(str(icon_path)))
81
87
 
82
88
  # Create and display main window
83
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  session = CellectsMainWidget()
{cellects-0.3.7 → cellects-0.3.9}/src/cellects.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.2
2
2
  Name: cellects
3
- Version: 0.3.7
3
+ Version: 0.3.9
4
4
  Summary: Cell Expansion Computer Tracking Software.
5
5
  Author: Aurèle Boussard
6
6
  License: GNU GENERAL PUBLIC LICENSE
@@ -725,12 +725,13 @@ Requires-Dist: mkdocs-jupyter; extra == "doc"
725
725
  Cellects: Cell Expansion Computer Tracking Software
726
726
  </h1>
727
727
 
728
+ [![Windows Installer](https://img.shields.io/github/v/release/Aurele-B/Cellects?label=Windows%20Installer&logo=windows&color=blue)](https://github.com/Aurele-B/Cellects/releases/latest/)
729
+ [![macOS Installer](https://img.shields.io/github/v/release/Aurele-B/Cellects?label=macOS%20Installer&logo=apple&color=black)](https://github.com/Aurele-B/Cellects/releases/latest)
728
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  [![PyPI version](https://img.shields.io/pypi/v/cellects.svg?style=flat-square)](https://pypi.org/project/cellects/)
729
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  ![PyPI - Downloads](https://img.shields.io/pypi/dm/cellects)
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  [![Python versions](https://img.shields.io/pypi/pyversions/cellects.svg?style=flat-square)](https://pypi.org/project/cellects/)
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  [![License](https://img.shields.io/pypi/l/cellects.svg?style=flat-square)](https://github.com/Aurele-B/cellects/blob/main/LICENSE)
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  [![Stars](https://img.shields.io/github/stars/Aurele-B/cellects.svg?style=flat-square)](https://github.com/Aurele-B/cellects/stargazers)
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- ![GitHub Actions Workflow Status](https://img.shields.io/github/actions/workflow/status/Aurele-B/Cellects/.github%2Fworkflows%2Frelease.yml)
734
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  ![Coverage](https://raw.githubusercontent.com/Aurele-B/cellects/gh-pages/badges/coverage.svg)
735
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736
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  Description
@@ -749,7 +750,9 @@ easy installation and user-friendly interface.
749
750
  ---
750
751
 
751
752
  ## Installation (Short version)
752
- Install using our Windows installer: [Cellects_installer.exe](https://github.com/Aurele-B/Cellects/releases/)
753
+ Install using our installers:
754
+ - Windows: [Cellects-x.x.x-setup.exe](https://github.com/Aurele-B/Cellects/releases/)
755
+ - macOS: [Cellects-x.x.x-setup.dmg](https://github.com/Aurele-B/Cellects/releases/)
753
756
 
754
757
  Or, install via pip:
755
758
  ```bash
{cellects-0.3.7 → cellects-0.3.9}/src/cellects.egg-info/SOURCES.txt RENAMED
@@ -31,6 +31,7 @@ src/cellects/gui/video_analysis_window.py
31
31
  src/cellects/icons/__init__.py
32
32
  src/cellects/icons/cellects_icon.icns
33
33
  src/cellects/icons/cellects_icon.ico
34
+ src/cellects/icons/cellects_icon.png
34
35
  src/cellects/image_analysis/__init__.py
35
36
  src/cellects/image_analysis/cell_leaving_detection.py
36
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  src/cellects/image_analysis/image_segmentation.py
{cellects-0.3.7 → cellects-0.3.9}/LICENSE RENAMED
File without changes
{cellects-0.3.7 → cellects-0.3.9}/setup.cfg RENAMED
File without changes