celldetective 1.4.2__tar.gz → 1.5.0b1__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {celldetective-1.4.2 → celldetective-1.5.0b1}/PKG-INFO +1 -1
- celldetective-1.5.0b1/celldetective/__init__.py +26 -0
- celldetective-1.5.0b1/celldetective/__main__.py +85 -0
- celldetective-1.5.0b1/celldetective/_version.py +1 -0
- celldetective-1.5.0b1/celldetective/extra_properties.py +647 -0
- celldetective-1.5.0b1/celldetective/filters.py +250 -0
- celldetective-1.5.0b1/celldetective/gui/InitWindow.py +555 -0
- {celldetective-1.4.2/celldetective/gui/table_ops → celldetective-1.5.0b1/celldetective/gui}/__init__.py +0 -0
- celldetective-1.5.0b1/celldetective/gui/about.py +53 -0
- celldetective-1.5.0b1/celldetective/gui/analyze_block.py +132 -0
- celldetective-1.5.0b1/celldetective/gui/base/channel_norm_generator.py +335 -0
- celldetective-1.5.0b1/celldetective/gui/base/components.py +249 -0
- celldetective-1.5.0b1/celldetective/gui/base/feature_choice.py +92 -0
- celldetective-1.5.0b1/celldetective/gui/base/figure_canvas.py +52 -0
- celldetective-1.5.0b1/celldetective/gui/base/list_widget.py +133 -0
- {celldetective-1.4.2/celldetective/gui → celldetective-1.5.0b1/celldetective/gui/base}/styles.py +92 -36
- celldetective-1.5.0b1/celldetective/gui/base/utils.py +33 -0
- celldetective-1.5.0b1/celldetective/gui/base_annotator.py +919 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/gui/classifier_widget.py +6 -22
- celldetective-1.5.0b1/celldetective/gui/configure_new_exp.py +798 -0
- celldetective-1.5.0b1/celldetective/gui/control_panel.py +650 -0
- celldetective-1.5.0b1/celldetective/gui/dynamic_progress.py +449 -0
- celldetective-1.5.0b1/celldetective/gui/event_annotator.py +2046 -0
- celldetective-1.5.0b1/celldetective/gui/generic_signal_plot.py +1316 -0
- celldetective-1.5.0b1/celldetective/gui/gui_utils.py +983 -0
- celldetective-1.5.0b1/celldetective/gui/interactions_block.py +658 -0
- celldetective-1.5.0b1/celldetective/gui/interactive_timeseries_viewer.py +447 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/gui/json_readers.py +48 -15
- celldetective-1.5.0b1/celldetective/gui/layouts/__init__.py +5 -0
- celldetective-1.5.0b1/celldetective/gui/layouts/background_model_free_layout.py +537 -0
- celldetective-1.5.0b1/celldetective/gui/layouts/channel_offset_layout.py +134 -0
- celldetective-1.5.0b1/celldetective/gui/layouts/local_correction_layout.py +91 -0
- celldetective-1.5.0b1/celldetective/gui/layouts/model_fit_layout.py +372 -0
- celldetective-1.5.0b1/celldetective/gui/layouts/operation_layout.py +68 -0
- celldetective-1.5.0b1/celldetective/gui/layouts/protocol_designer_layout.py +96 -0
- celldetective-1.5.0b1/celldetective/gui/pair_event_annotator.py +3151 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/gui/plot_measurements.py +586 -267
- celldetective-1.5.0b1/celldetective/gui/plot_signals_ui.py +745 -0
- celldetective-1.5.0b1/celldetective/gui/preprocessing_block.py +395 -0
- celldetective-1.5.0b1/celldetective/gui/process_block.py +1695 -0
- celldetective-1.5.0b1/celldetective/gui/seg_model_loader.py +592 -0
- celldetective-1.5.0b1/celldetective/gui/settings/_cellpose_model_params.py +181 -0
- celldetective-1.5.0b1/celldetective/gui/settings/_event_detection_model_params.py +95 -0
- celldetective-1.5.0b1/celldetective/gui/settings/_segmentation_model_params.py +159 -0
- celldetective-1.5.0b1/celldetective/gui/settings/_settings_base.py +82 -0
- celldetective-1.5.0b1/celldetective/gui/settings/_settings_event_model_training.py +770 -0
- celldetective-1.5.0b1/celldetective/gui/settings/_settings_measurements.py +1158 -0
- celldetective-1.5.0b1/celldetective/gui/settings/_settings_neighborhood.py +585 -0
- celldetective-1.5.0b1/celldetective/gui/settings/_settings_segmentation_model_training.py +795 -0
- celldetective-1.5.0b1/celldetective/gui/settings/_settings_signal_annotator.py +343 -0
- celldetective-1.5.0b1/celldetective/gui/settings/_settings_tracking.py +1333 -0
- celldetective-1.5.0b1/celldetective/gui/settings/_stardist_model_params.py +98 -0
- celldetective-1.5.0b1/celldetective/gui/survival_ui.py +439 -0
- celldetective-1.5.0b1/celldetective/gui/tableUI.py +1706 -0
- celldetective-1.5.0b1/celldetective/gui/table_ops/_maths.py +295 -0
- celldetective-1.5.0b1/celldetective/gui/table_ops/_merge_groups.py +140 -0
- celldetective-1.5.0b1/celldetective/gui/table_ops/_merge_one_hot.py +95 -0
- celldetective-1.5.0b1/celldetective/gui/table_ops/_query_table.py +43 -0
- celldetective-1.5.0b1/celldetective/gui/table_ops/_rename_col.py +44 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/gui/thresholds_gui.py +382 -179
- celldetective-1.5.0b1/celldetective/gui/viewers/base_viewer.py +700 -0
- celldetective-1.5.0b1/celldetective/gui/viewers/channel_offset_viewer.py +331 -0
- celldetective-1.5.0b1/celldetective/gui/viewers/contour_viewer.py +394 -0
- celldetective-1.5.0b1/celldetective/gui/viewers/size_viewer.py +153 -0
- celldetective-1.5.0b1/celldetective/gui/viewers/spot_detection_viewer.py +341 -0
- celldetective-1.5.0b1/celldetective/gui/viewers/threshold_viewer.py +309 -0
- celldetective-1.5.0b1/celldetective/gui/workers.py +417 -0
- celldetective-1.5.0b1/celldetective/log_manager.py +92 -0
- celldetective-1.5.0b1/celldetective/measure.py +1921 -0
- celldetective-1.5.0b1/celldetective/models/segmentation_targets/blank +0 -0
- celldetective-1.5.0b1/celldetective/models/signal_detection/blank +0 -0
- celldetective-1.5.0b1/celldetective/napari/__init__.py +0 -0
- celldetective-1.5.0b1/celldetective/napari/utils.py +1025 -0
- celldetective-1.5.0b1/celldetective/neighborhood.py +1949 -0
- celldetective-1.5.0b1/celldetective/preprocessing.py +1643 -0
- celldetective-1.5.0b1/celldetective/processes/__init__.py +0 -0
- celldetective-1.5.0b1/celldetective/processes/background_correction.py +271 -0
- celldetective-1.5.0b1/celldetective/processes/compute_neighborhood.py +894 -0
- celldetective-1.5.0b1/celldetective/processes/detect_events.py +246 -0
- celldetective-1.5.0b1/celldetective/processes/downloader.py +137 -0
- celldetective-1.5.0b1/celldetective/processes/measure_cells.py +565 -0
- celldetective-1.5.0b1/celldetective/processes/segment_cells.py +760 -0
- celldetective-1.5.0b1/celldetective/processes/track_cells.py +435 -0
- celldetective-1.5.0b1/celldetective/processes/train_segmentation_model.py +694 -0
- celldetective-1.5.0b1/celldetective/processes/train_signal_model.py +265 -0
- celldetective-1.5.0b1/celldetective/processes/unified_process.py +292 -0
- celldetective-1.5.0b1/celldetective/regionprops/_regionprops.py +378 -0
- celldetective-1.5.0b1/celldetective/relative_measurements.py +1061 -0
- celldetective-1.5.0b1/celldetective/scripts/measure_cells.py +418 -0
- celldetective-1.5.0b1/celldetective/scripts/measure_relative.py +136 -0
- celldetective-1.5.0b1/celldetective/scripts/segment_cells.py +252 -0
- celldetective-1.5.0b1/celldetective/scripts/segment_cells_thresholds.py +174 -0
- celldetective-1.5.0b1/celldetective/scripts/track_cells.py +306 -0
- celldetective-1.5.0b1/celldetective/scripts/train_segmentation_model.py +375 -0
- celldetective-1.5.0b1/celldetective/scripts/train_signal_model.py +121 -0
- celldetective-1.5.0b1/celldetective/segmentation.py +873 -0
- celldetective-1.5.0b1/celldetective/signals.py +3599 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/tracking.py +30 -15
- celldetective-1.5.0b1/celldetective/utils/__init__.py +0 -0
- celldetective-1.5.0b1/celldetective/utils/cellpose_utils/__init__.py +133 -0
- celldetective-1.5.0b1/celldetective/utils/color_mappings.py +42 -0
- celldetective-1.5.0b1/celldetective/utils/data_cleaning.py +630 -0
- celldetective-1.5.0b1/celldetective/utils/data_loaders.py +450 -0
- celldetective-1.5.0b1/celldetective/utils/dataset_helpers.py +207 -0
- celldetective-1.5.0b1/celldetective/utils/downloaders.py +235 -0
- celldetective-1.5.0b1/celldetective/utils/event_detection/__init__.py +8 -0
- celldetective-1.5.0b1/celldetective/utils/experiment.py +1782 -0
- celldetective-1.5.0b1/celldetective/utils/image_augmenters.py +308 -0
- celldetective-1.5.0b1/celldetective/utils/image_cleaning.py +74 -0
- celldetective-1.5.0b1/celldetective/utils/image_loaders.py +926 -0
- celldetective-1.5.0b1/celldetective/utils/image_transforms.py +335 -0
- celldetective-1.5.0b1/celldetective/utils/io.py +62 -0
- celldetective-1.5.0b1/celldetective/utils/mask_cleaning.py +348 -0
- celldetective-1.5.0b1/celldetective/utils/mask_transforms.py +5 -0
- celldetective-1.5.0b1/celldetective/utils/masks.py +184 -0
- celldetective-1.5.0b1/celldetective/utils/maths.py +351 -0
- celldetective-1.5.0b1/celldetective/utils/model_getters.py +325 -0
- celldetective-1.5.0b1/celldetective/utils/model_loaders.py +296 -0
- celldetective-1.5.0b1/celldetective/utils/normalization.py +380 -0
- celldetective-1.5.0b1/celldetective/utils/parsing.py +465 -0
- celldetective-1.5.0b1/celldetective/utils/plots/__init__.py +0 -0
- celldetective-1.5.0b1/celldetective/utils/plots/regression.py +53 -0
- celldetective-1.5.0b1/celldetective/utils/resources.py +34 -0
- celldetective-1.5.0b1/celldetective/utils/stardist_utils/__init__.py +104 -0
- celldetective-1.5.0b1/celldetective/utils/stats.py +90 -0
- celldetective-1.5.0b1/celldetective/utils/types.py +21 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective.egg-info/PKG-INFO +1 -1
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective.egg-info/SOURCES.txt +78 -14
- {celldetective-1.4.2 → celldetective-1.5.0b1}/setup.py +16 -11
- celldetective-1.5.0b1/tests/__init__.py +0 -0
- celldetective-1.5.0b1/tests/gui/__init__.py +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/tests/gui/test_new_project.py +129 -117
- celldetective-1.5.0b1/tests/gui/test_project.py +147 -0
- celldetective-1.5.0b1/tests/test_filters.py +48 -0
- celldetective-1.5.0b1/tests/test_notebooks.py +8 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/tests/test_tracking.py +232 -13
- celldetective-1.5.0b1/tests/test_utils.py +164 -0
- celldetective-1.4.2/celldetective/__init__.py +0 -1
- celldetective-1.4.2/celldetective/__main__.py +0 -66
- celldetective-1.4.2/celldetective/_version.py +0 -1
- celldetective-1.4.2/celldetective/extra_properties.py +0 -569
- celldetective-1.4.2/celldetective/filters.py +0 -155
- celldetective-1.4.2/celldetective/gui/InitWindow.py +0 -425
- celldetective-1.4.2/celldetective/gui/__init__.py +0 -15
- celldetective-1.4.2/celldetective/gui/about.py +0 -48
- celldetective-1.4.2/celldetective/gui/analyze_block.py +0 -96
- celldetective-1.4.2/celldetective/gui/base_annotator.py +0 -786
- celldetective-1.4.2/celldetective/gui/base_components.py +0 -23
- celldetective-1.4.2/celldetective/gui/configure_new_exp.py +0 -692
- celldetective-1.4.2/celldetective/gui/control_panel.py +0 -539
- celldetective-1.4.2/celldetective/gui/event_annotator.py +0 -1685
- celldetective-1.4.2/celldetective/gui/generic_signal_plot.py +0 -968
- celldetective-1.4.2/celldetective/gui/gui_utils.py +0 -1373
- celldetective-1.4.2/celldetective/gui/layouts.py +0 -1602
- celldetective-1.4.2/celldetective/gui/pair_event_annotator.py +0 -2456
- celldetective-1.4.2/celldetective/gui/plot_signals_ui.py +0 -527
- celldetective-1.4.2/celldetective/gui/process_block.py +0 -1848
- celldetective-1.4.2/celldetective/gui/processes/compute_neighborhood.py +0 -594
- celldetective-1.4.2/celldetective/gui/processes/downloader.py +0 -111
- celldetective-1.4.2/celldetective/gui/processes/measure_cells.py +0 -360
- celldetective-1.4.2/celldetective/gui/processes/segment_cells.py +0 -499
- celldetective-1.4.2/celldetective/gui/processes/track_cells.py +0 -303
- celldetective-1.4.2/celldetective/gui/processes/train_segmentation_model.py +0 -270
- celldetective-1.4.2/celldetective/gui/processes/train_signal_model.py +0 -108
- celldetective-1.4.2/celldetective/gui/seg_model_loader.py +0 -485
- celldetective-1.4.2/celldetective/gui/settings/__init__.py +0 -7
- celldetective-1.4.2/celldetective/gui/settings/_settings_base.py +0 -70
- celldetective-1.4.2/celldetective/gui/settings/_settings_event_model_training.py +0 -544
- celldetective-1.4.2/celldetective/gui/settings/_settings_measurements.py +0 -989
- celldetective-1.4.2/celldetective/gui/settings/_settings_neighborhood.py +0 -499
- celldetective-1.4.2/celldetective/gui/settings/_settings_segmentation_model_training.py +0 -580
- celldetective-1.4.2/celldetective/gui/settings/_settings_signal_annotator.py +0 -319
- celldetective-1.4.2/celldetective/gui/settings/_settings_tracking.py +0 -1123
- celldetective-1.4.2/celldetective/gui/survival_ui.py +0 -329
- celldetective-1.4.2/celldetective/gui/tableUI.py +0 -1742
- celldetective-1.4.2/celldetective/gui/table_ops/merge_groups.py +0 -118
- celldetective-1.4.2/celldetective/gui/viewers.py +0 -1354
- celldetective-1.4.2/celldetective/gui/workers.py +0 -140
- celldetective-1.4.2/celldetective/io.py +0 -3663
- celldetective-1.4.2/celldetective/measure.py +0 -1504
- celldetective-1.4.2/celldetective/neighborhood.py +0 -1483
- celldetective-1.4.2/celldetective/preprocessing.py +0 -1243
- celldetective-1.4.2/celldetective/regionprops/_regionprops.py +0 -337
- celldetective-1.4.2/celldetective/relative_measurements.py +0 -784
- celldetective-1.4.2/celldetective/scripts/measure_cells.py +0 -317
- celldetective-1.4.2/celldetective/scripts/measure_relative.py +0 -92
- celldetective-1.4.2/celldetective/scripts/segment_cells.py +0 -191
- celldetective-1.4.2/celldetective/scripts/segment_cells_thresholds.py +0 -146
- celldetective-1.4.2/celldetective/scripts/track_cells.py +0 -257
- celldetective-1.4.2/celldetective/scripts/train_segmentation_model.py +0 -252
- celldetective-1.4.2/celldetective/scripts/train_signal_model.py +0 -79
- celldetective-1.4.2/celldetective/segmentation.py +0 -778
- celldetective-1.4.2/celldetective/signals.py +0 -2946
- celldetective-1.4.2/celldetective/utils.py +0 -3108
- celldetective-1.4.2/tests/gui/test_project.py +0 -99
- celldetective-1.4.2/tests/test_filters.py +0 -24
- celldetective-1.4.2/tests/test_utils.py +0 -118
- {celldetective-1.4.2 → celldetective-1.5.0b1}/LICENSE +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/README.md +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/datasets/segmentation_annotations/blank +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/datasets/signal_annotations/blank +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/events.py +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/exceptions.py +0 -0
- {celldetective-1.4.2/tests → celldetective-1.5.0b1/celldetective/gui/base}/__init__.py +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/gui/help/DL-segmentation-strategy.json +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/gui/help/Threshold-vs-DL.json +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/gui/help/cell-populations.json +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/gui/help/exp-structure.json +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/gui/help/feature-btrack.json +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/gui/help/neighborhood.json +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/gui/help/prefilter-for-segmentation.json +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/gui/help/preprocessing.json +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/gui/help/propagate-classification.json +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/gui/help/track-postprocessing.json +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/gui/help/tracking.json +0 -0
- {celldetective-1.4.2/tests/gui → celldetective-1.5.0b1/celldetective/gui/settings}/__init__.py +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/gui/settings/_settings_segmentation.py +0 -0
- /celldetective-1.4.2/celldetective/models/pair_signal_detection/blank → /celldetective-1.5.0b1/celldetective/gui/table_ops/__init__.py +0 -0
- /celldetective-1.4.2/celldetective/models/segmentation_effectors/blank → /celldetective-1.5.0b1/celldetective/gui/viewers/__init__.py +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/icons/logo-large.png +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/icons/logo.png +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/icons/signals_icon.png +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/icons/splash-test.png +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/icons/splash.png +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/icons/splash0.png +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/icons/survival2.png +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/icons/vignette_signals2.png +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/icons/vignette_signals2.svg +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/links/zenodo.json +0 -0
- {celldetective-1.4.2/celldetective/models/segmentation_generic → celldetective-1.5.0b1/celldetective/models/pair_signal_detection}/blank +0 -0
- {celldetective-1.4.2/celldetective/models/segmentation_targets → celldetective-1.5.0b1/celldetective/models/segmentation_effectors}/blank +0 -0
- {celldetective-1.4.2/celldetective/models/signal_detection → celldetective-1.5.0b1/celldetective/models/segmentation_generic}/blank +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/models/tracking_configs/biased_motion.json +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/models/tracking_configs/mcf7.json +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/models/tracking_configs/no_z_motion.json +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/models/tracking_configs/ricm.json +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/models/tracking_configs/ricm2.json +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/regionprops/__init__.py +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/regionprops/props.json +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/scripts/analyze_signals.py +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective.egg-info/dependency_links.txt +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective.egg-info/entry_points.txt +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective.egg-info/not-zip-safe +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective.egg-info/requires.txt +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective.egg-info/top_level.txt +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/setup.cfg +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/tests/test_events.py +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/tests/test_io.py +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/tests/test_measure.py +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/tests/test_neighborhood.py +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/tests/test_preprocessing.py +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/tests/test_segmentation.py +0 -0
- {celldetective-1.4.2 → celldetective-1.5.0b1}/tests/test_signals.py +0 -0
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from ._version import __version__
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import os
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from .log_manager import setup_global_logging, get_logger
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# Define default log path in user home
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USER_LOG_DIR = os.path.join(os.path.expanduser("~"), ".celldetective", "logs")
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GLOBAL_LOG_FILE = os.path.join(USER_LOG_DIR, "celldetective.log")
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# Setup logging
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setup_global_logging(log_file=GLOBAL_LOG_FILE)
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# Expose logger
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logger = get_logger()
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def get_software_location() -> str:
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"""
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Get the installation folder of celldetective.
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Returns
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-------
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str
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Path to the celldetective installation folder.
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"""
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return rf"{os.path.split(os.path.dirname(os.path.realpath(__file__)))[0]}"
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#!/usr/bin/env python3
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import sys
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import os
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os.environ["KMP_DUPLICATE_LIB_OK"] = "TRUE"
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from PyQt5.QtWidgets import QApplication, QSplashScreen
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from PyQt5.QtGui import QPixmap
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from os import sep
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# os.environ['QT_DEBUG_PLUGINS'] = '1'
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if __name__ == "__main__":
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splash = True
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from celldetective import logger
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from celldetective import get_software_location
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logger.info("Loading the libraries...")
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App = QApplication(sys.argv)
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App.setStyle("Fusion")
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software_location = get_software_location()
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if splash:
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splash_pix = QPixmap(
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sep.join([software_location, "celldetective", "icons", "splash.png"])
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)
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splash = QSplashScreen(splash_pix)
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splash.setMask(splash_pix.mask())
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splash.show()
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App.processEvents()
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# Update check in background
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def check_update():
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try:
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import requests
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import re
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from celldetective import __version__
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package = "celldetective"
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response = requests.get(f"https://pypi.org/pypi/{package}/json", timeout=5)
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latest_version = response.json()["info"]["version"]
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latest_version_num = re.sub("[^0-9]", "", latest_version)
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current_version_num = re.sub("[^0-9]", "", __version__)
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if len(latest_version_num) != len(current_version_num):
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max_length = max([len(latest_version_num), len(current_version_num)])
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latest_version_num = int(
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latest_version_num.zfill(max_length - len(latest_version_num))
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)
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current_version_num = int(
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current_version_num.zfill(max_length - len(current_version_num))
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)
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if latest_version_num > current_version_num:
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logger.warning(
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"Update is available...\nPlease update using `pip install --upgrade celldetective`..."
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)
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except Exception as e:
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logger.error(
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f"Update check failed... Please check your internet connection: {e}"
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)
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import threading
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update_thread = threading.Thread(target=check_update)
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update_thread.daemon = True
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update_thread.start()
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from celldetective.gui.InitWindow import AppInitWindow
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logger.info("Libraries successfully loaded...")
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from celldetective.gui.base.utils import center_window
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window = AppInitWindow(App, software_location=software_location)
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center_window(window)
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if splash:
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splash.finish(window)
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sys.exit(App.exec())
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__version__ = "1.5.0b1"
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