celldetective 1.4.2__tar.gz → 1.5.0b1__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (253) hide show
  1. {celldetective-1.4.2 → celldetective-1.5.0b1}/PKG-INFO +1 -1
  2. celldetective-1.5.0b1/celldetective/__init__.py +26 -0
  3. celldetective-1.5.0b1/celldetective/__main__.py +85 -0
  4. celldetective-1.5.0b1/celldetective/_version.py +1 -0
  5. celldetective-1.5.0b1/celldetective/extra_properties.py +647 -0
  6. celldetective-1.5.0b1/celldetective/filters.py +250 -0
  7. celldetective-1.5.0b1/celldetective/gui/InitWindow.py +555 -0
  8. {celldetective-1.4.2/celldetective/gui/table_ops → celldetective-1.5.0b1/celldetective/gui}/__init__.py +0 -0
  9. celldetective-1.5.0b1/celldetective/gui/about.py +53 -0
  10. celldetective-1.5.0b1/celldetective/gui/analyze_block.py +132 -0
  11. celldetective-1.5.0b1/celldetective/gui/base/channel_norm_generator.py +335 -0
  12. celldetective-1.5.0b1/celldetective/gui/base/components.py +249 -0
  13. celldetective-1.5.0b1/celldetective/gui/base/feature_choice.py +92 -0
  14. celldetective-1.5.0b1/celldetective/gui/base/figure_canvas.py +52 -0
  15. celldetective-1.5.0b1/celldetective/gui/base/list_widget.py +133 -0
  16. {celldetective-1.4.2/celldetective/gui → celldetective-1.5.0b1/celldetective/gui/base}/styles.py +92 -36
  17. celldetective-1.5.0b1/celldetective/gui/base/utils.py +33 -0
  18. celldetective-1.5.0b1/celldetective/gui/base_annotator.py +919 -0
  19. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/gui/classifier_widget.py +6 -22
  20. celldetective-1.5.0b1/celldetective/gui/configure_new_exp.py +798 -0
  21. celldetective-1.5.0b1/celldetective/gui/control_panel.py +650 -0
  22. celldetective-1.5.0b1/celldetective/gui/dynamic_progress.py +449 -0
  23. celldetective-1.5.0b1/celldetective/gui/event_annotator.py +2046 -0
  24. celldetective-1.5.0b1/celldetective/gui/generic_signal_plot.py +1316 -0
  25. celldetective-1.5.0b1/celldetective/gui/gui_utils.py +983 -0
  26. celldetective-1.5.0b1/celldetective/gui/interactions_block.py +658 -0
  27. celldetective-1.5.0b1/celldetective/gui/interactive_timeseries_viewer.py +447 -0
  28. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/gui/json_readers.py +48 -15
  29. celldetective-1.5.0b1/celldetective/gui/layouts/__init__.py +5 -0
  30. celldetective-1.5.0b1/celldetective/gui/layouts/background_model_free_layout.py +537 -0
  31. celldetective-1.5.0b1/celldetective/gui/layouts/channel_offset_layout.py +134 -0
  32. celldetective-1.5.0b1/celldetective/gui/layouts/local_correction_layout.py +91 -0
  33. celldetective-1.5.0b1/celldetective/gui/layouts/model_fit_layout.py +372 -0
  34. celldetective-1.5.0b1/celldetective/gui/layouts/operation_layout.py +68 -0
  35. celldetective-1.5.0b1/celldetective/gui/layouts/protocol_designer_layout.py +96 -0
  36. celldetective-1.5.0b1/celldetective/gui/pair_event_annotator.py +3151 -0
  37. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/gui/plot_measurements.py +586 -267
  38. celldetective-1.5.0b1/celldetective/gui/plot_signals_ui.py +745 -0
  39. celldetective-1.5.0b1/celldetective/gui/preprocessing_block.py +395 -0
  40. celldetective-1.5.0b1/celldetective/gui/process_block.py +1695 -0
  41. celldetective-1.5.0b1/celldetective/gui/seg_model_loader.py +592 -0
  42. celldetective-1.5.0b1/celldetective/gui/settings/_cellpose_model_params.py +181 -0
  43. celldetective-1.5.0b1/celldetective/gui/settings/_event_detection_model_params.py +95 -0
  44. celldetective-1.5.0b1/celldetective/gui/settings/_segmentation_model_params.py +159 -0
  45. celldetective-1.5.0b1/celldetective/gui/settings/_settings_base.py +82 -0
  46. celldetective-1.5.0b1/celldetective/gui/settings/_settings_event_model_training.py +770 -0
  47. celldetective-1.5.0b1/celldetective/gui/settings/_settings_measurements.py +1158 -0
  48. celldetective-1.5.0b1/celldetective/gui/settings/_settings_neighborhood.py +585 -0
  49. celldetective-1.5.0b1/celldetective/gui/settings/_settings_segmentation_model_training.py +795 -0
  50. celldetective-1.5.0b1/celldetective/gui/settings/_settings_signal_annotator.py +343 -0
  51. celldetective-1.5.0b1/celldetective/gui/settings/_settings_tracking.py +1333 -0
  52. celldetective-1.5.0b1/celldetective/gui/settings/_stardist_model_params.py +98 -0
  53. celldetective-1.5.0b1/celldetective/gui/survival_ui.py +439 -0
  54. celldetective-1.5.0b1/celldetective/gui/tableUI.py +1706 -0
  55. celldetective-1.5.0b1/celldetective/gui/table_ops/_maths.py +295 -0
  56. celldetective-1.5.0b1/celldetective/gui/table_ops/_merge_groups.py +140 -0
  57. celldetective-1.5.0b1/celldetective/gui/table_ops/_merge_one_hot.py +95 -0
  58. celldetective-1.5.0b1/celldetective/gui/table_ops/_query_table.py +43 -0
  59. celldetective-1.5.0b1/celldetective/gui/table_ops/_rename_col.py +44 -0
  60. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/gui/thresholds_gui.py +382 -179
  61. celldetective-1.5.0b1/celldetective/gui/viewers/base_viewer.py +700 -0
  62. celldetective-1.5.0b1/celldetective/gui/viewers/channel_offset_viewer.py +331 -0
  63. celldetective-1.5.0b1/celldetective/gui/viewers/contour_viewer.py +394 -0
  64. celldetective-1.5.0b1/celldetective/gui/viewers/size_viewer.py +153 -0
  65. celldetective-1.5.0b1/celldetective/gui/viewers/spot_detection_viewer.py +341 -0
  66. celldetective-1.5.0b1/celldetective/gui/viewers/threshold_viewer.py +309 -0
  67. celldetective-1.5.0b1/celldetective/gui/workers.py +417 -0
  68. celldetective-1.5.0b1/celldetective/log_manager.py +92 -0
  69. celldetective-1.5.0b1/celldetective/measure.py +1921 -0
  70. celldetective-1.5.0b1/celldetective/models/segmentation_targets/blank +0 -0
  71. celldetective-1.5.0b1/celldetective/models/signal_detection/blank +0 -0
  72. celldetective-1.5.0b1/celldetective/napari/__init__.py +0 -0
  73. celldetective-1.5.0b1/celldetective/napari/utils.py +1025 -0
  74. celldetective-1.5.0b1/celldetective/neighborhood.py +1949 -0
  75. celldetective-1.5.0b1/celldetective/preprocessing.py +1643 -0
  76. celldetective-1.5.0b1/celldetective/processes/__init__.py +0 -0
  77. celldetective-1.5.0b1/celldetective/processes/background_correction.py +271 -0
  78. celldetective-1.5.0b1/celldetective/processes/compute_neighborhood.py +894 -0
  79. celldetective-1.5.0b1/celldetective/processes/detect_events.py +246 -0
  80. celldetective-1.5.0b1/celldetective/processes/downloader.py +137 -0
  81. celldetective-1.5.0b1/celldetective/processes/measure_cells.py +565 -0
  82. celldetective-1.5.0b1/celldetective/processes/segment_cells.py +760 -0
  83. celldetective-1.5.0b1/celldetective/processes/track_cells.py +435 -0
  84. celldetective-1.5.0b1/celldetective/processes/train_segmentation_model.py +694 -0
  85. celldetective-1.5.0b1/celldetective/processes/train_signal_model.py +265 -0
  86. celldetective-1.5.0b1/celldetective/processes/unified_process.py +292 -0
  87. celldetective-1.5.0b1/celldetective/regionprops/_regionprops.py +378 -0
  88. celldetective-1.5.0b1/celldetective/relative_measurements.py +1061 -0
  89. celldetective-1.5.0b1/celldetective/scripts/measure_cells.py +418 -0
  90. celldetective-1.5.0b1/celldetective/scripts/measure_relative.py +136 -0
  91. celldetective-1.5.0b1/celldetective/scripts/segment_cells.py +252 -0
  92. celldetective-1.5.0b1/celldetective/scripts/segment_cells_thresholds.py +174 -0
  93. celldetective-1.5.0b1/celldetective/scripts/track_cells.py +306 -0
  94. celldetective-1.5.0b1/celldetective/scripts/train_segmentation_model.py +375 -0
  95. celldetective-1.5.0b1/celldetective/scripts/train_signal_model.py +121 -0
  96. celldetective-1.5.0b1/celldetective/segmentation.py +873 -0
  97. celldetective-1.5.0b1/celldetective/signals.py +3599 -0
  98. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/tracking.py +30 -15
  99. celldetective-1.5.0b1/celldetective/utils/__init__.py +0 -0
  100. celldetective-1.5.0b1/celldetective/utils/cellpose_utils/__init__.py +133 -0
  101. celldetective-1.5.0b1/celldetective/utils/color_mappings.py +42 -0
  102. celldetective-1.5.0b1/celldetective/utils/data_cleaning.py +630 -0
  103. celldetective-1.5.0b1/celldetective/utils/data_loaders.py +450 -0
  104. celldetective-1.5.0b1/celldetective/utils/dataset_helpers.py +207 -0
  105. celldetective-1.5.0b1/celldetective/utils/downloaders.py +235 -0
  106. celldetective-1.5.0b1/celldetective/utils/event_detection/__init__.py +8 -0
  107. celldetective-1.5.0b1/celldetective/utils/experiment.py +1782 -0
  108. celldetective-1.5.0b1/celldetective/utils/image_augmenters.py +308 -0
  109. celldetective-1.5.0b1/celldetective/utils/image_cleaning.py +74 -0
  110. celldetective-1.5.0b1/celldetective/utils/image_loaders.py +926 -0
  111. celldetective-1.5.0b1/celldetective/utils/image_transforms.py +335 -0
  112. celldetective-1.5.0b1/celldetective/utils/io.py +62 -0
  113. celldetective-1.5.0b1/celldetective/utils/mask_cleaning.py +348 -0
  114. celldetective-1.5.0b1/celldetective/utils/mask_transforms.py +5 -0
  115. celldetective-1.5.0b1/celldetective/utils/masks.py +184 -0
  116. celldetective-1.5.0b1/celldetective/utils/maths.py +351 -0
  117. celldetective-1.5.0b1/celldetective/utils/model_getters.py +325 -0
  118. celldetective-1.5.0b1/celldetective/utils/model_loaders.py +296 -0
  119. celldetective-1.5.0b1/celldetective/utils/normalization.py +380 -0
  120. celldetective-1.5.0b1/celldetective/utils/parsing.py +465 -0
  121. celldetective-1.5.0b1/celldetective/utils/plots/__init__.py +0 -0
  122. celldetective-1.5.0b1/celldetective/utils/plots/regression.py +53 -0
  123. celldetective-1.5.0b1/celldetective/utils/resources.py +34 -0
  124. celldetective-1.5.0b1/celldetective/utils/stardist_utils/__init__.py +104 -0
  125. celldetective-1.5.0b1/celldetective/utils/stats.py +90 -0
  126. celldetective-1.5.0b1/celldetective/utils/types.py +21 -0
  127. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective.egg-info/PKG-INFO +1 -1
  128. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective.egg-info/SOURCES.txt +78 -14
  129. {celldetective-1.4.2 → celldetective-1.5.0b1}/setup.py +16 -11
  130. celldetective-1.5.0b1/tests/__init__.py +0 -0
  131. celldetective-1.5.0b1/tests/gui/__init__.py +0 -0
  132. {celldetective-1.4.2 → celldetective-1.5.0b1}/tests/gui/test_new_project.py +129 -117
  133. celldetective-1.5.0b1/tests/gui/test_project.py +147 -0
  134. celldetective-1.5.0b1/tests/test_filters.py +48 -0
  135. celldetective-1.5.0b1/tests/test_notebooks.py +8 -0
  136. {celldetective-1.4.2 → celldetective-1.5.0b1}/tests/test_tracking.py +232 -13
  137. celldetective-1.5.0b1/tests/test_utils.py +164 -0
  138. celldetective-1.4.2/celldetective/__init__.py +0 -1
  139. celldetective-1.4.2/celldetective/__main__.py +0 -66
  140. celldetective-1.4.2/celldetective/_version.py +0 -1
  141. celldetective-1.4.2/celldetective/extra_properties.py +0 -569
  142. celldetective-1.4.2/celldetective/filters.py +0 -155
  143. celldetective-1.4.2/celldetective/gui/InitWindow.py +0 -425
  144. celldetective-1.4.2/celldetective/gui/__init__.py +0 -15
  145. celldetective-1.4.2/celldetective/gui/about.py +0 -48
  146. celldetective-1.4.2/celldetective/gui/analyze_block.py +0 -96
  147. celldetective-1.4.2/celldetective/gui/base_annotator.py +0 -786
  148. celldetective-1.4.2/celldetective/gui/base_components.py +0 -23
  149. celldetective-1.4.2/celldetective/gui/configure_new_exp.py +0 -692
  150. celldetective-1.4.2/celldetective/gui/control_panel.py +0 -539
  151. celldetective-1.4.2/celldetective/gui/event_annotator.py +0 -1685
  152. celldetective-1.4.2/celldetective/gui/generic_signal_plot.py +0 -968
  153. celldetective-1.4.2/celldetective/gui/gui_utils.py +0 -1373
  154. celldetective-1.4.2/celldetective/gui/layouts.py +0 -1602
  155. celldetective-1.4.2/celldetective/gui/pair_event_annotator.py +0 -2456
  156. celldetective-1.4.2/celldetective/gui/plot_signals_ui.py +0 -527
  157. celldetective-1.4.2/celldetective/gui/process_block.py +0 -1848
  158. celldetective-1.4.2/celldetective/gui/processes/compute_neighborhood.py +0 -594
  159. celldetective-1.4.2/celldetective/gui/processes/downloader.py +0 -111
  160. celldetective-1.4.2/celldetective/gui/processes/measure_cells.py +0 -360
  161. celldetective-1.4.2/celldetective/gui/processes/segment_cells.py +0 -499
  162. celldetective-1.4.2/celldetective/gui/processes/track_cells.py +0 -303
  163. celldetective-1.4.2/celldetective/gui/processes/train_segmentation_model.py +0 -270
  164. celldetective-1.4.2/celldetective/gui/processes/train_signal_model.py +0 -108
  165. celldetective-1.4.2/celldetective/gui/seg_model_loader.py +0 -485
  166. celldetective-1.4.2/celldetective/gui/settings/__init__.py +0 -7
  167. celldetective-1.4.2/celldetective/gui/settings/_settings_base.py +0 -70
  168. celldetective-1.4.2/celldetective/gui/settings/_settings_event_model_training.py +0 -544
  169. celldetective-1.4.2/celldetective/gui/settings/_settings_measurements.py +0 -989
  170. celldetective-1.4.2/celldetective/gui/settings/_settings_neighborhood.py +0 -499
  171. celldetective-1.4.2/celldetective/gui/settings/_settings_segmentation_model_training.py +0 -580
  172. celldetective-1.4.2/celldetective/gui/settings/_settings_signal_annotator.py +0 -319
  173. celldetective-1.4.2/celldetective/gui/settings/_settings_tracking.py +0 -1123
  174. celldetective-1.4.2/celldetective/gui/survival_ui.py +0 -329
  175. celldetective-1.4.2/celldetective/gui/tableUI.py +0 -1742
  176. celldetective-1.4.2/celldetective/gui/table_ops/merge_groups.py +0 -118
  177. celldetective-1.4.2/celldetective/gui/viewers.py +0 -1354
  178. celldetective-1.4.2/celldetective/gui/workers.py +0 -140
  179. celldetective-1.4.2/celldetective/io.py +0 -3663
  180. celldetective-1.4.2/celldetective/measure.py +0 -1504
  181. celldetective-1.4.2/celldetective/neighborhood.py +0 -1483
  182. celldetective-1.4.2/celldetective/preprocessing.py +0 -1243
  183. celldetective-1.4.2/celldetective/regionprops/_regionprops.py +0 -337
  184. celldetective-1.4.2/celldetective/relative_measurements.py +0 -784
  185. celldetective-1.4.2/celldetective/scripts/measure_cells.py +0 -317
  186. celldetective-1.4.2/celldetective/scripts/measure_relative.py +0 -92
  187. celldetective-1.4.2/celldetective/scripts/segment_cells.py +0 -191
  188. celldetective-1.4.2/celldetective/scripts/segment_cells_thresholds.py +0 -146
  189. celldetective-1.4.2/celldetective/scripts/track_cells.py +0 -257
  190. celldetective-1.4.2/celldetective/scripts/train_segmentation_model.py +0 -252
  191. celldetective-1.4.2/celldetective/scripts/train_signal_model.py +0 -79
  192. celldetective-1.4.2/celldetective/segmentation.py +0 -778
  193. celldetective-1.4.2/celldetective/signals.py +0 -2946
  194. celldetective-1.4.2/celldetective/utils.py +0 -3108
  195. celldetective-1.4.2/tests/gui/test_project.py +0 -99
  196. celldetective-1.4.2/tests/test_filters.py +0 -24
  197. celldetective-1.4.2/tests/test_utils.py +0 -118
  198. {celldetective-1.4.2 → celldetective-1.5.0b1}/LICENSE +0 -0
  199. {celldetective-1.4.2 → celldetective-1.5.0b1}/README.md +0 -0
  200. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/datasets/segmentation_annotations/blank +0 -0
  201. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/datasets/signal_annotations/blank +0 -0
  202. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/events.py +0 -0
  203. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/exceptions.py +0 -0
  204. {celldetective-1.4.2/tests → celldetective-1.5.0b1/celldetective/gui/base}/__init__.py +0 -0
  205. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/gui/help/DL-segmentation-strategy.json +0 -0
  206. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/gui/help/Threshold-vs-DL.json +0 -0
  207. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/gui/help/cell-populations.json +0 -0
  208. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/gui/help/exp-structure.json +0 -0
  209. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/gui/help/feature-btrack.json +0 -0
  210. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/gui/help/neighborhood.json +0 -0
  211. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/gui/help/prefilter-for-segmentation.json +0 -0
  212. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/gui/help/preprocessing.json +0 -0
  213. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/gui/help/propagate-classification.json +0 -0
  214. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/gui/help/track-postprocessing.json +0 -0
  215. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/gui/help/tracking.json +0 -0
  216. {celldetective-1.4.2/tests/gui → celldetective-1.5.0b1/celldetective/gui/settings}/__init__.py +0 -0
  217. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/gui/settings/_settings_segmentation.py +0 -0
  218. /celldetective-1.4.2/celldetective/models/pair_signal_detection/blank → /celldetective-1.5.0b1/celldetective/gui/table_ops/__init__.py +0 -0
  219. /celldetective-1.4.2/celldetective/models/segmentation_effectors/blank → /celldetective-1.5.0b1/celldetective/gui/viewers/__init__.py +0 -0
  220. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/icons/logo-large.png +0 -0
  221. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/icons/logo.png +0 -0
  222. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/icons/signals_icon.png +0 -0
  223. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/icons/splash-test.png +0 -0
  224. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/icons/splash.png +0 -0
  225. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/icons/splash0.png +0 -0
  226. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/icons/survival2.png +0 -0
  227. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/icons/vignette_signals2.png +0 -0
  228. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/icons/vignette_signals2.svg +0 -0
  229. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/links/zenodo.json +0 -0
  230. {celldetective-1.4.2/celldetective/models/segmentation_generic → celldetective-1.5.0b1/celldetective/models/pair_signal_detection}/blank +0 -0
  231. {celldetective-1.4.2/celldetective/models/segmentation_targets → celldetective-1.5.0b1/celldetective/models/segmentation_effectors}/blank +0 -0
  232. {celldetective-1.4.2/celldetective/models/signal_detection → celldetective-1.5.0b1/celldetective/models/segmentation_generic}/blank +0 -0
  233. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/models/tracking_configs/biased_motion.json +0 -0
  234. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/models/tracking_configs/mcf7.json +0 -0
  235. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/models/tracking_configs/no_z_motion.json +0 -0
  236. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/models/tracking_configs/ricm.json +0 -0
  237. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/models/tracking_configs/ricm2.json +0 -0
  238. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/regionprops/__init__.py +0 -0
  239. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/regionprops/props.json +0 -0
  240. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective/scripts/analyze_signals.py +0 -0
  241. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective.egg-info/dependency_links.txt +0 -0
  242. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective.egg-info/entry_points.txt +0 -0
  243. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective.egg-info/not-zip-safe +0 -0
  244. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective.egg-info/requires.txt +0 -0
  245. {celldetective-1.4.2 → celldetective-1.5.0b1}/celldetective.egg-info/top_level.txt +0 -0
  246. {celldetective-1.4.2 → celldetective-1.5.0b1}/setup.cfg +0 -0
  247. {celldetective-1.4.2 → celldetective-1.5.0b1}/tests/test_events.py +0 -0
  248. {celldetective-1.4.2 → celldetective-1.5.0b1}/tests/test_io.py +0 -0
  249. {celldetective-1.4.2 → celldetective-1.5.0b1}/tests/test_measure.py +0 -0
  250. {celldetective-1.4.2 → celldetective-1.5.0b1}/tests/test_neighborhood.py +0 -0
  251. {celldetective-1.4.2 → celldetective-1.5.0b1}/tests/test_preprocessing.py +0 -0
  252. {celldetective-1.4.2 → celldetective-1.5.0b1}/tests/test_segmentation.py +0 -0
  253. {celldetective-1.4.2 → celldetective-1.5.0b1}/tests/test_signals.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: celldetective
3
- Version: 1.4.2
3
+ Version: 1.5.0b1
4
4
  Summary: description
5
5
  Home-page: http://github.com/remyeltorro/celldetective
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6
  Author: Rémy Torro
@@ -0,0 +1,26 @@
1
+ from ._version import __version__
2
+ import os
3
+ from .log_manager import setup_global_logging, get_logger
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+
5
+ # Define default log path in user home
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+ USER_LOG_DIR = os.path.join(os.path.expanduser("~"), ".celldetective", "logs")
7
+ GLOBAL_LOG_FILE = os.path.join(USER_LOG_DIR, "celldetective.log")
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+
9
+ # Setup logging
10
+ setup_global_logging(log_file=GLOBAL_LOG_FILE)
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+
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+ # Expose logger
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+ logger = get_logger()
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+
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+
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+ def get_software_location() -> str:
17
+ """
18
+ Get the installation folder of celldetective.
19
+
20
+ Returns
21
+ -------
22
+ str
23
+ Path to the celldetective installation folder.
24
+ """
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+
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+ return rf"{os.path.split(os.path.dirname(os.path.realpath(__file__)))[0]}"
@@ -0,0 +1,85 @@
1
+ #!/usr/bin/env python3
2
+ import sys
3
+ import os
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+
5
+ os.environ["KMP_DUPLICATE_LIB_OK"] = "TRUE"
6
+
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+ from PyQt5.QtWidgets import QApplication, QSplashScreen
8
+ from PyQt5.QtGui import QPixmap
9
+ from os import sep
10
+
11
+ # os.environ['QT_DEBUG_PLUGINS'] = '1'
12
+
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+ if __name__ == "__main__":
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+
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+ splash = True
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+ from celldetective import logger
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+ from celldetective import get_software_location
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+
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+ logger.info("Loading the libraries...")
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+
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+ App = QApplication(sys.argv)
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+ App.setStyle("Fusion")
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+
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+ software_location = get_software_location()
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+
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+ if splash:
27
+ splash_pix = QPixmap(
28
+ sep.join([software_location, "celldetective", "icons", "splash.png"])
29
+ )
30
+ splash = QSplashScreen(splash_pix)
31
+ splash.setMask(splash_pix.mask())
32
+ splash.show()
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+ App.processEvents()
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+
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+ # Update check in background
36
+ def check_update():
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+ try:
38
+ import requests
39
+ import re
40
+ from celldetective import __version__
41
+
42
+ package = "celldetective"
43
+ response = requests.get(f"https://pypi.org/pypi/{package}/json", timeout=5)
44
+ latest_version = response.json()["info"]["version"]
45
+
46
+ latest_version_num = re.sub("[^0-9]", "", latest_version)
47
+ current_version_num = re.sub("[^0-9]", "", __version__)
48
+
49
+ if len(latest_version_num) != len(current_version_num):
50
+ max_length = max([len(latest_version_num), len(current_version_num)])
51
+ latest_version_num = int(
52
+ latest_version_num.zfill(max_length - len(latest_version_num))
53
+ )
54
+ current_version_num = int(
55
+ current_version_num.zfill(max_length - len(current_version_num))
56
+ )
57
+
58
+ if latest_version_num > current_version_num:
59
+ logger.warning(
60
+ "Update is available...\nPlease update using `pip install --upgrade celldetective`..."
61
+ )
62
+ except Exception as e:
63
+ logger.error(
64
+ f"Update check failed... Please check your internet connection: {e}"
65
+ )
66
+
67
+ import threading
68
+
69
+ update_thread = threading.Thread(target=check_update)
70
+ update_thread.daemon = True
71
+ update_thread.start()
72
+
73
+ from celldetective.gui.InitWindow import AppInitWindow
74
+
75
+ logger.info("Libraries successfully loaded...")
76
+
77
+ from celldetective.gui.base.utils import center_window
78
+
79
+ window = AppInitWindow(App, software_location=software_location)
80
+ center_window(window)
81
+
82
+ if splash:
83
+ splash.finish(window)
84
+
85
+ sys.exit(App.exec())
@@ -0,0 +1 @@
1
+ __version__ = "1.5.0b1"