celldetective 1.0.2__tar.gz → 1.0.2.post1__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (73) hide show
  1. {celldetective-1.0.2 → celldetective-1.0.2.post1}/PKG-INFO +32 -2
  2. {celldetective-1.0.2 → celldetective-1.0.2.post1}/README.rst +4 -1
  3. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective.egg-info/PKG-INFO +32 -2
  4. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective.egg-info/SOURCES.txt +1 -0
  5. celldetective-1.0.2.post1/celldetective.egg-info/requires.txt +27 -0
  6. celldetective-1.0.2.post1/setup.py +46 -0
  7. celldetective-1.0.2/setup.py +0 -21
  8. {celldetective-1.0.2 → celldetective-1.0.2.post1}/LICENSE +0 -0
  9. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/__init__.py +0 -0
  10. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/__main__.py +0 -0
  11. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/datasets/segmentation_annotations/blank +0 -0
  12. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/datasets/signal_annotations/blank +0 -0
  13. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/events.py +0 -0
  14. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/extra_properties.py +0 -0
  15. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/filters.py +0 -0
  16. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/gui/__init__.py +0 -0
  17. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/gui/about.py +0 -0
  18. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/gui/analyze_block.py +0 -0
  19. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/gui/btrack_options.py +0 -0
  20. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/gui/classifier_widget.py +0 -0
  21. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/gui/configure_new_exp.py +0 -0
  22. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/gui/control_panel.py +0 -0
  23. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/gui/gui_utils.py +0 -0
  24. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/gui/json_readers.py +0 -0
  25. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/gui/measurement_options.py +0 -0
  26. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/gui/neighborhood_options.py +0 -0
  27. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/gui/plot_signals_ui.py +0 -0
  28. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/gui/process_block.py +0 -0
  29. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/gui/retrain_segmentation_model_options.py +0 -0
  30. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/gui/retrain_signal_model_options.py +0 -0
  31. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/gui/seg_model_loader.py +0 -0
  32. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/gui/signal_annotator.py +0 -0
  33. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/gui/signal_annotator_options.py +0 -0
  34. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/gui/styles.py +0 -0
  35. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/gui/survival_ui.py +0 -0
  36. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/gui/tableUI.py +0 -0
  37. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/gui/thresholds_gui.py +0 -0
  38. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/icons/logo-large.png +0 -0
  39. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/icons/logo.png +0 -0
  40. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/icons/signals_icon.png +0 -0
  41. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/icons/splash-test.png +0 -0
  42. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/icons/splash.png +0 -0
  43. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/icons/splash0.png +0 -0
  44. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/icons/survival2.png +0 -0
  45. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/icons/vignette_signals2.png +0 -0
  46. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/icons/vignette_signals2.svg +0 -0
  47. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/io.py +0 -0
  48. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/links/zenodo.json +0 -0
  49. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/measure.py +0 -0
  50. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/models/segmentation_effectors/blank +0 -0
  51. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/models/segmentation_generic/blank +0 -0
  52. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/models/segmentation_targets/blank +0 -0
  53. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/models/signal_detection/blank +0 -0
  54. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/models/tracking_configs/mcf7.json +0 -0
  55. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/models/tracking_configs/ricm.json +0 -0
  56. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/models/tracking_configs/ricm2.json +0 -0
  57. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/neighborhood.py +0 -0
  58. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/scripts/analyze_signals.py +0 -0
  59. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/scripts/measure_cells.py +0 -0
  60. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/scripts/segment_cells.py +0 -0
  61. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/scripts/segment_cells_thresholds.py +0 -0
  62. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/scripts/track_cells.py +0 -0
  63. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/scripts/train_segmentation_model.py +0 -0
  64. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/scripts/train_signal_model.py +0 -0
  65. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/segmentation.py +0 -0
  66. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/signals.py +0 -0
  67. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/tracking.py +0 -0
  68. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective/utils.py +0 -0
  69. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective.egg-info/dependency_links.txt +0 -0
  70. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective.egg-info/entry_points.txt +0 -0
  71. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective.egg-info/not-zip-safe +0 -0
  72. {celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective.egg-info/top_level.txt +0 -0
  73. {celldetective-1.0.2 → celldetective-1.0.2.post1}/setup.cfg +0 -0
{celldetective-1.0.2 → celldetective-1.0.2.post1}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: celldetective
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- Version: 1.0.2
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+ Version: 1.0.2.post1
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  Summary: description
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  Home-page: http://github.com/remyeltorro/celldetective
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  Author: Rémy Torro
@@ -8,6 +8,36 @@ Author-email: remy.torro@inserm.fr
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  License: GPL-3.0
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  Description-Content-Type: text/markdown
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  License-File: LICENSE
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+ Requires-Dist: wheel
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+ Requires-Dist: nbsphinx
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+ Requires-Dist: nbsphinx_link
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+ Requires-Dist: sphinx_rtd_theme
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+ Requires-Dist: sphinx==5.0.2
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+ Requires-Dist: jinja2<3.1
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+ Requires-Dist: ipykernel
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+ Requires-Dist: stardist
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+ Requires-Dist: cellpose<3
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+ Requires-Dist: scikit-learn
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+ Requires-Dist: btrack
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+ Requires-Dist: tensorflow<=2.12.1
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+ Requires-Dist: napari
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+ Requires-Dist: tqdm
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+ Requires-Dist: mahotas
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+ Requires-Dist: fonticon-materialdesignicons6
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+ Requires-Dist: art
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+ Requires-Dist: lifelines
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+ Requires-Dist: setuptools
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+ Requires-Dist: scipy
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+ Requires-Dist: seaborn
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+ Requires-Dist: opencv-python-headless==4.7.0.72
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+ Requires-Dist: liblapack
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+ Requires-Dist: gputools
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+ Requires-Dist: lmfit~=1.2.2
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+ Requires-Dist: superqt>=0.6.1
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+ Requires-Dist: setuptools
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+
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+ Celldetective
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+ =============
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  .. raw:: html
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@@ -18,7 +48,7 @@ License-File: LICENSE
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  </embed>
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  |ico1| |ico2| |ico3|
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-
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+
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  .. |ico1| image:: https://img.shields.io/readthedocs/celldetective?link=https%3A%2F%2Fcelldetective.readthedocs.io%2Fen%2Flatest%2Findex.html
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  .. |ico2| image:: https://img.shields.io/github/forks/remyeltorro/celldetective?link=https%3A%2F%2Fgithub.com%2Fremyeltorro%2Fcelldetective%2Fforks
{celldetective-1.0.2 → celldetective-1.0.2.post1}/README.rst RENAMED
@@ -1,3 +1,6 @@
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+ Celldetective
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+ =============
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+
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  .. raw:: html
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  <embed>
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  </embed>
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  .. |ico1| image:: https://img.shields.io/readthedocs/celldetective?link=https%3A%2F%2Fcelldetective.readthedocs.io%2Fen%2Flatest%2Findex.html
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{celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
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  Metadata-Version: 2.1
2
2
  Name: celldetective
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- Version: 1.0.2
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+ Version: 1.0.2.post1
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  Summary: description
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  Home-page: http://github.com/remyeltorro/celldetective
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  Author: Rémy Torro
@@ -8,6 +8,36 @@ Author-email: remy.torro@inserm.fr
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  License: GPL-3.0
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  Description-Content-Type: text/markdown
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  License-File: LICENSE
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+ Requires-Dist: wheel
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+ Requires-Dist: nbsphinx
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+ Requires-Dist: nbsphinx_link
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+ Requires-Dist: sphinx_rtd_theme
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+ Requires-Dist: sphinx==5.0.2
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+ Requires-Dist: jinja2<3.1
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+ Requires-Dist: ipykernel
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+ Requires-Dist: stardist
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+ Requires-Dist: cellpose<3
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+ Requires-Dist: scikit-learn
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+ Requires-Dist: btrack
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+ Requires-Dist: tensorflow<=2.12.1
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+ Requires-Dist: napari
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+ Requires-Dist: tqdm
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+ Requires-Dist: mahotas
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+ Requires-Dist: fonticon-materialdesignicons6
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+ Requires-Dist: art
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+ Requires-Dist: lifelines
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+ Requires-Dist: setuptools
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+ Requires-Dist: scipy
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+ Requires-Dist: seaborn
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+ Requires-Dist: opencv-python-headless==4.7.0.72
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+ Requires-Dist: liblapack
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+ Requires-Dist: gputools
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+ Requires-Dist: lmfit~=1.2.2
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+ Requires-Dist: superqt>=0.6.1
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+ Requires-Dist: setuptools
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+
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+ Celldetective
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+ =============
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  .. raw:: html
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@@ -18,7 +48,7 @@ License-File: LICENSE
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  </embed>
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  |ico1| |ico2| |ico3|
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-
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  .. |ico1| image:: https://img.shields.io/readthedocs/celldetective?link=https%3A%2F%2Fcelldetective.readthedocs.io%2Fen%2Flatest%2Findex.html
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{celldetective-1.0.2 → celldetective-1.0.2.post1}/celldetective.egg-info/SOURCES.txt RENAMED
@@ -18,6 +18,7 @@ celldetective.egg-info/SOURCES.txt
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  celldetective.egg-info/dependency_links.txt
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  celldetective.egg-info/entry_points.txt
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  celldetective.egg-info/not-zip-safe
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+ celldetective.egg-info/requires.txt
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  celldetective.egg-info/top_level.txt
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  celldetective/datasets/segmentation_annotations/blank
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  celldetective/datasets/signal_annotations/blank
celldetective-1.0.2.post1/celldetective.egg-info/requires.txt ADDED
@@ -0,0 +1,27 @@
1
+ wheel
2
+ nbsphinx
3
+ nbsphinx_link
4
+ sphinx_rtd_theme
5
+ sphinx==5.0.2
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+ jinja2<3.1
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+ ipykernel
8
+ stardist
9
+ cellpose<3
10
+ scikit-learn
11
+ btrack
12
+ tensorflow<=2.12.1
13
+ napari
14
+ tqdm
15
+ mahotas
16
+ fonticon-materialdesignicons6
17
+ art
18
+ lifelines
19
+ setuptools
20
+ scipy
21
+ seaborn
22
+ opencv-python-headless==4.7.0.72
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+ liblapack
24
+ gputools
25
+ lmfit~=1.2.2
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+ superqt>=0.6.1
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+ setuptools
celldetective-1.0.2.post1/setup.py ADDED
@@ -0,0 +1,46 @@
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+ from setuptools import setup
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+ import setuptools
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+ import pip
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+
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+ from pip._internal.req import parse_requirements
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+
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+ links = []
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+ requires = []
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+
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+ requirements = parse_requirements('requirements.txt', session='hack')
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+ requirements = list(requirements)
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+ try:
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+ requirements = [str(ir.req) for ir in requirements]
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+ except:
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+ requirements = [str(ir.requirement) for ir in requirements]
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+
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+
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+ # for item in requirements:
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+ # # we want to handle package names and also repo urls
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+ # if getattr(item, 'url', None): # older pip has url
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+ # links.append(str(item.url))
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+ # if getattr(item, 'link', None): # newer pip has link
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+ # links.append(str(item.link))
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+ # if item.req:
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+ # requires.append(str(item.req))
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+
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+ setup(name='celldetective',
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+ version='1.0.2.post1',
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+ description='description',
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+ long_description=open('README.rst',encoding="utf8").read(),
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+ long_description_content_type='text/markdown',
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+ url='http://github.com/remyeltorro/celldetective',
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+ author='Rémy Torro',
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+ author_email='remy.torro@inserm.fr',
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+ license='GPL-3.0',
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+ packages=setuptools.find_packages(),
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+ zip_safe=False,
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+ package_data={'celldetective': ['*','scripts/*','gui/*','models/*/*/*','models/*','models/*/*','icons/*','links/*','datasets/*', 'datasets/*/*']},
39
+ entry_points = {
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+ 'console_scripts': [
41
+ 'celldetective = celldetective.__main__:main'],
42
+ },
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+ install_requires = requirements,
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+ #dependency_links = links
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+ )
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+
celldetective-1.0.2/setup.py DELETED
@@ -1,21 +0,0 @@
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- from setuptools import setup
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- import setuptools
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-
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- setup(name='celldetective',
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- version='1.0.2',
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- description='description',
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- long_description=open('README.rst').read(),
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- long_description_content_type='text/markdown',
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- url='http://github.com/remyeltorro/celldetective',
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- author='Rémy Torro',
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- author_email='remy.torro@inserm.fr',
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- license='GPL-3.0',
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- packages=setuptools.find_packages(),
14
- zip_safe=False,
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- package_data={'celldetective': ['*','scripts/*','gui/*','models/*/*/*','models/*','models/*/*','icons/*','links/*','datasets/*', 'datasets/*/*']},
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- entry_points = {
17
- 'console_scripts': [
18
- 'celldetective = celldetective.__main__:main']
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- }
20
- )
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-