cellbrowser 1.2.12__tar.gz → 1.2.13__tar.gz

{cellbrowser-1.2.12/src/cbPyLib/cellbrowser.egg-info → cellbrowser-1.2.13}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.2
 Name: cellbrowser
-Version: 1.2.12
+Version: 1.2.13
 Summary: UCSC Cellbrowser, an interactive browser for single cell data. Includes converters and basic pipelines for text files, Seurat, Scanpy and Cellranger.
 Home-page: https://github.com/maximilianh/cellBrowser
 Author: Maximilian Haeussler

{cellbrowser-1.2.12 → cellbrowser-1.2.13}/src/cbPyLib/cellbrowser/R/cellbrowser.R

@@ -88,6 +88,10 @@ exportImages <- function(obj, outDir, embeddings.conf) {
     for (name in names(obj@images)) { 
         message(name); 
         img = GetImage(obj, mode="raw", image=name); 
+        if (is.null(img)) {
+            message("The image is not a bitmap image, cannot export yet.")
+            return(embeddings.conf)
+        }
         imgPath <- file.path(outDir, paste0(name, ".jpg"))
         message("Writing image ", imgPath)
         #writePNG(img, imgPath);  # JPEG seems like a better choice here, 4x smaller at default quality settings.

{cellbrowser-1.2.12 → cellbrowser-1.2.13}/src/cbPyLib/cellbrowser/_version.py

@@ -8,11 +8,11 @@ import json
 
 version_json = '''
 {
- "date": "2025-02-14T09:13:15-0800",
+ "date": "2025-04-17T11:03:49-0700",
  "dirty": false,
  "error": null,
- "full-revisionid": "5cefb922e5dbfbcb3bc1764cf085d0c834d28e6f",
- "version": "1.2.12"
+ "full-revisionid": "269165a1189622408b651ea17b8cce70920bfdeb",
+ "version": "1.2.13"
 }
 '''  # END VERSION_JSON
 

{cellbrowser-1.2.12 → cellbrowser-1.2.13}/src/cbPyLib/cellbrowser/cbWeb/css/cellBrowser.css

@@ -148,6 +148,7 @@ section { font-weight: bold; padding-top: 5px; padding-bottom: 5px }
 }
 
 .tpRibbonButton {
+        background-color: #ccc;
         padding:  1px 2px 1px 2px; 
         border-radius: 4px;
         height: 24px;

{cellbrowser-1.2.12 → cellbrowser-1.2.13}/src/cbPyLib/cellbrowser/cbWeb/js/cbData.js

@@ -482,9 +482,9 @@ function CbDbFile(url) {
 
     this.findCoordIdx = function(name) {
         /* given coord label return its index */
-        coords = self.conf.coords;
+        let coords = self.conf.coords;
         for (let i=0; i<coords.length; i++) {
-            if (coords[i].name===coordLabel)
+            if (coords[i].shortLabel===name)
                 return i;
         }
     }
@@ -986,8 +986,14 @@ function CbDbFile(url) {
             let arrs = [];
             for (let r of loadedRanges) {
                 arrs.push(r.arr);
-                if (r.desc!=="")
-                    geneDescs.push(r.name);
+                if (r.desc!=="") {
+                    let desc = r.name;
+                    if (r.desc===r.name) {
+                        // try to get the symbol for a geneId
+                        desc = self.getGeneInfo(desc).sym;
+                    }
+                    geneDescs.push(desc);
+                }
             }
 
             // set gene description to an ;-separated list for multi-gene mode and