cellSP 2.1__tar.gz → 2.2.2__tar.gz

{cellsp-2.1 → cellsp-2.2.2}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: cellSP
-Version: 2.1
+Version: 2.2.2
 Summary: cellSP.
 Author-email: Bhavay Aggarwal <baggarwal9@gatech.edu>
 License-Expression: MIT

{cellsp-2.1 → cellsp-2.2.2}/cellSP/characterize/_sprawl.py

@@ -122,7 +122,7 @@ def run_sprawl(adata_st, methods = ['Peripheral', 'Radial', 'Punctate', 'Central
                 cell_dict['boundaries'][0], cell_dict['spot_coords'][0], cell_dict['spot_genes'][0] = vertices, spot_coords, spot_genes
                 cell_dict['zslices'].append(0)
                 cell_dict['gene_counts'] = cell.gene.value_counts().to_dict()
-                cell_dict['n'] += Z[['absX', 'absY']].values.shape[0]
+                cell_dict['n'] += cell[['absX', 'absY']].values.shape[0]
         if "gene_counts" in cell_dict:
             cell_dict['genes'] = np.unique(list(cell_dict['gene_counts'].keys()))
             if len(cell_dict["zslices"]) > 0 and min(cell_dict['gene_counts'].values()) >= 2:

{cellsp-2.1 → cellsp-2.2.2}/cellSP/visualisation/_compare.py

@@ -1,8 +1,7 @@
 import pandas as pd
 import numpy as np
 import matplotlib.pyplot as plt
-from itertools 
-import combinations
+from itertools import combinations
 from statsmodels.stats.proportion import proportions_ztest
 
 def apply_ztest_pos(c1, c2, n1, n2):

{cellsp-2.1 → cellsp-2.2.2}/cellSP.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: cellSP
-Version: 2.1
+Version: 2.2.2
 Summary: cellSP.
 Author-email: Bhavay Aggarwal <baggarwal9@gatech.edu>
 License-Expression: MIT

{cellsp-2.1 → cellsp-2.2.2}/pyproject.toml

@@ -4,14 +4,15 @@ build-backend = "setuptools.build_meta"
 
 [metadata]
 name = "cellSP"
-version = "2.1"
+version = "2.2.2"
+
 
 [tool.setuptools.packages]
 find = {}  # Scan the project directory with the default parameters
 
 [project]
 name = "cellSP"
-version = "2.1"
+version = "2.2.2"
 authors = [
   { name="Bhavay Aggarwal", email="baggarwal9@gatech.edu" },
 ]