cell-data-loader 0.0.6__tar.gz → 0.0.7__tar.gz

{cell_data_loader-0.0.6 → cell_data_loader-0.0.7}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: cell_data_loader
-Version: 0.0.6
+Version: 0.0.7
 Summary: Converts general images of cells into formats and labels for deep learning pipelines
 Project-URL: Homepage, https://github.com/mleming/CellDataLoader
 Author-email: Matt Leming <mleming@mgh.harvard.edu>
@@ -86,6 +86,20 @@ for label,image in dataloader:
 	...
 ~~~
 
+Boxes
+-----
+
+In cases where you need to cut out individual cells from an image and have the coordinates file, cell_data_loader.py accepts an argument, cell_box_filelist, which is a list of files corresponding to the inputs that mark out the coordinates of labels on the cells. The format of the csv is as follows:
+
+| X  | Y   | W  | H | Label |
+| -  | -   | -  | - | ----- |
+| 14 | 13  | 5  | 6 | 0     |
+| 20 | 25  | 15 | 5 | 1     |
+
+
+~~~python
+dataloader = CellDataloader('/path/to/file.svs',cell_box_filelist=['/path/to/boxfile.csv'])
+~~~
 
 Arguments
 ---------

{cell_data_loader-0.0.6 → cell_data_loader-0.0.7}/README.md

@@ -66,6 +66,20 @@ for label,image in dataloader:
 	...
 ~~~
 
+Boxes
+-----
+
+In cases where you need to cut out individual cells from an image and have the coordinates file, cell_data_loader.py accepts an argument, cell_box_filelist, which is a list of files corresponding to the inputs that mark out the coordinates of labels on the cells. The format of the csv is as follows:
+
+| X  | Y   | W  | H | Label |
+| -  | -   | -  | - | ----- |
+| 14 | 13  | 5  | 6 | 0     |
+| 20 | 25  | 15 | 5 | 1     |
+
+
+~~~python
+dataloader = CellDataloader('/path/to/file.svs',cell_box_filelist=['/path/to/boxfile.csv'])
+~~~
 
 Arguments
 ---------

{cell_data_loader-0.0.6 → cell_data_loader-0.0.7}/pyproject.toml

@@ -2,7 +2,7 @@
 
 name = "cell_data_loader"
 
-version = "0.0.6"
+version = "0.0.7"
 
 dependencies = [
   "numpy",

{cell_data_loader-0.0.6 → cell_data_loader-0.0.7}/src/cell_data_loader/cell_data_loader.py

@@ -307,12 +307,6 @@ class CellDataloader():#BaseDataset):
 				self.label_input_format = "Cell_Box_Regex"
 			elif self.cell_box_filelist is not None:
 				assert(len(all_filename_lists) == 1)
-				if self.image_folders is not None:
-					raise Exception(" To input cell boxes, files must be "+\
-						"input individually as a list and not as a folder, "+\
-						"to ensure one-to-one correspondence between the "+\
-						"box file and the image. Use the filelists parameter "+\
-						"instead of the image_folders parameter")
 				if isinstance(self.cell_box_filelist,str): # One image
 					self.cell_box_filelist = [[self.cell_box_filelist]]
 				elif isinstance(self.cell_box_filelist,list):