celescope 2.3.1.dev0__tar.gz → 2.3.2__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (316) hide show
  1. {celescope-2.3.1.dev0/celescope.egg-info → celescope-2.3.2}/PKG-INFO +1 -1
  2. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/__init__.py +1 -1
  3. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/tools/parse_chemistry.py +2 -1
  4. {celescope-2.3.1.dev0 → celescope-2.3.2/celescope.egg-info}/PKG-INFO +1 -1
  5. {celescope-2.3.1.dev0 → celescope-2.3.2}/LICENSE +0 -0
  6. {celescope-2.3.1.dev0 → celescope-2.3.2}/MANIFEST.in +0 -0
  7. {celescope-2.3.1.dev0 → celescope-2.3.2}/README.md +0 -0
  8. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/bulk_rna/__init__.py +0 -0
  9. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/bulk_rna/multi_bulk_rna.py +0 -0
  10. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/bulk_rna/starsolo.py +0 -0
  11. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/bulk_vdj/__init__.py +0 -0
  12. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/bulk_vdj/consensus.py +0 -0
  13. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/bulk_vdj/count_vdj.py +0 -0
  14. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/bulk_vdj/mapping_vdj.py +0 -0
  15. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/bulk_vdj/multi_bulk_vdj.py +0 -0
  16. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/capture_virus/__init__.py +0 -0
  17. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/capture_virus/analysis_virus.py +0 -0
  18. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/capture_virus/count.py +0 -0
  19. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/capture_virus/count_virus.py +0 -0
  20. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/capture_virus/featureCounts.py +0 -0
  21. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/capture_virus/filter_virus.py +0 -0
  22. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/capture_virus/mkref.py +0 -0
  23. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/capture_virus/multi_capture_virus.py +0 -0
  24. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/capture_virus/star_virus.py +0 -0
  25. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/celescope.py +0 -0
  26. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/chemistry_dict.py +0 -0
  27. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/citeseq/__init__.py +0 -0
  28. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/citeseq/analysis_cite.py +0 -0
  29. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/citeseq/count_cite.py +0 -0
  30. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/citeseq/mapping_tag.py +0 -0
  31. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/citeseq/multi_citeseq.py +0 -0
  32. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/Clindex/tag_barcode.fasta +0 -0
  33. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/Clindex/tag_linker.fasta +0 -0
  34. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/HLA/hla_reference_rna.fasta +0 -0
  35. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/__init__.py +0 -0
  36. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/chemistry/5p3p-1/bc1.txt +0 -0
  37. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/chemistry/5p3p-1/bc2.txt +0 -0
  38. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/chemistry/5p3p-1/bc3.txt +0 -0
  39. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/chemistry/5p3p-2/bc1.txt +0 -0
  40. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/chemistry/5p3p-2/bc2.txt +0 -0
  41. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/chemistry/5p3p-2/bc3.txt +0 -0
  42. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/chemistry/5p3p-3/bc1.txt +0 -0
  43. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/chemistry/5p3p-3/bc2.txt +0 -0
  44. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/chemistry/5p3p-3/bc3.txt +0 -0
  45. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/chemistry/GEXSCOPE-V1/bc.txt +0 -0
  46. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/chemistry/GEXSCOPE-V1/linker1.txt +0 -0
  47. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/chemistry/GEXSCOPE-V1/linker2.txt +0 -0
  48. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/chemistry/GEXSCOPE-V2/bc1.txt +0 -0
  49. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/chemistry/GEXSCOPE-V2/bc2.txt +0 -0
  50. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/chemistry/GEXSCOPE-V2/bc3.txt +0 -0
  51. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/chemistry/GEXSCOPE-V2/linker1.txt +0 -0
  52. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/chemistry/GEXSCOPE-V2/linker2.txt +0 -0
  53. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/chemistry/GEXSCOPE-V3/bc1.txt +0 -0
  54. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/chemistry/GEXSCOPE-V3/bc2.txt +0 -0
  55. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/chemistry/GEXSCOPE-V3/bc3.txt +0 -0
  56. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/chemistry/GEXSCOPE-V3/linker1.txt +0 -0
  57. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/chemistry/GEXSCOPE-V3/linker2.txt +0 -0
  58. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/chemistry/__init__.py +0 -0
  59. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/chemistry/bulk_rna-V1/bc.txt +0 -0
  60. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/chemistry/bulk_rna-V2/bc.txt +0 -0
  61. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/chemistry/bulk_rna-bulk_vdj_match/bc.txt +0 -0
  62. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/chemistry/bulk_vdj/bc.txt +0 -0
  63. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/chemistry/bulk_vdj/linker.txt +0 -0
  64. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/chemistry/flv/bc.txt +0 -0
  65. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/chemistry/flv/linker +0 -0
  66. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/chemistry/flv_rna/bc.txt +0 -0
  67. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/chemistry/flv_rna/linker_4types +0 -0
  68. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/fusion/blood_1/BCR_ABL1_PML_RARA_all.fasta +0 -0
  69. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/fusion/blood_1/BCR_ABL1_PML_RARA_all_pos.txt +0 -0
  70. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/fusion/blood_1/mkref.sh +0 -0
  71. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/rRNA/human_ribo.fasta +0 -0
  72. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/snp/panel/CHIP.bed +0 -0
  73. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/snp/panel/blood_1.bed +0 -0
  74. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/snp/panel/lung_1.bed +0 -0
  75. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/sweetseq/sweetseq_barcode.fasta +0 -0
  76. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/data/sweetseq/sweetseq_linker.fasta +0 -0
  77. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/dynaseq/__init__.py +0 -0
  78. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/dynaseq/conversion.py +0 -0
  79. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/dynaseq/multi_dynaseq.py +0 -0
  80. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/dynaseq/replacement.py +0 -0
  81. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/dynaseq/substitution.py +0 -0
  82. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/flv_trust4/__init__.py +0 -0
  83. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/flv_trust4/annotation.py +0 -0
  84. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/flv_trust4/assemble.py +0 -0
  85. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/flv_trust4/mapping.py +0 -0
  86. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/flv_trust4/multi_flv_trust4.py +0 -0
  87. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/flv_trust4/summarize.py +0 -0
  88. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/fusion/__init__.py +0 -0
  89. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/fusion/analysis_fusion.py +0 -0
  90. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/fusion/count_fusion.py +0 -0
  91. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/fusion/filter_fusion.py +0 -0
  92. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/fusion/mkref.py +0 -0
  93. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/fusion/multi_fusion.py +0 -0
  94. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/fusion/star_fusion.py +0 -0
  95. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/hla/__init__.py +0 -0
  96. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/hla/mapping_hla.py +0 -0
  97. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/hla/multi_hla.py +0 -0
  98. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/pathseq/__init__.py +0 -0
  99. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/pathseq/analysis_pathseq.py +0 -0
  100. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/pathseq/count_pathseq.py +0 -0
  101. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/pathseq/multi_pathseq.py +0 -0
  102. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/pathseq/pathseq.py +0 -0
  103. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/pathseq/starsolo.py +0 -0
  104. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/rna/__init__.py +0 -0
  105. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/rna/analysis.py +0 -0
  106. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/rna/mkref.py +0 -0
  107. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/rna/multi_rna.py +0 -0
  108. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/rna/star.py +0 -0
  109. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/rna_5p3p/__init__.py +0 -0
  110. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/rna_5p3p/convert.py +0 -0
  111. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/rna_5p3p/multi_rna_5p3p.py +0 -0
  112. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/snp/__init__.py +0 -0
  113. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/snp/analysis_snp.py +0 -0
  114. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/snp/filter_snp.py +0 -0
  115. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/snp/mkref.py +0 -0
  116. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/snp/multi_snp.py +0 -0
  117. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/snp/variant_calling.py +0 -0
  118. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/sweetseq/__init__.py +0 -0
  119. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/sweetseq/analysis_tag.py +0 -0
  120. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/sweetseq/count_tag.py +0 -0
  121. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/sweetseq/mapping_tag.py +0 -0
  122. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/sweetseq/multi_sweetseq.py +0 -0
  123. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/tag/__init__.py +0 -0
  124. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/tag/analysis_tag.py +0 -0
  125. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/tag/count_tag.py +0 -0
  126. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/tag/mapping_tag.py +0 -0
  127. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/tag/multi_tag.py +0 -0
  128. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/tag/split_tag.py +0 -0
  129. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/templates/css/bootstrap.min.css +0 -0
  130. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/templates/css/buttons.dataTables.min.css +0 -0
  131. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/templates/css/dataTables.jqueryui.min.css +0 -0
  132. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/templates/css/fontello-323401c3/config.json +0 -0
  133. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/templates/css/fontello-323401c3/css/animation.css +0 -0
  134. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/templates/css/fontello-323401c3/css/fontello-codes.css +0 -0
  135. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/templates/css/fontello-323401c3/css/fontello-embedded.css +0 -0
  136. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/templates/css/fontello-323401c3/css/fontello-ie7-codes.css +0 -0
  137. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/templates/css/fontello-323401c3/css/fontello-ie7.css +0 -0
  138. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/templates/css/fontello-323401c3/css/fontello.css +0 -0
  139. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/templates/css/fontello-323401c3/font/fontello.eot +0 -0
  140. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/templates/css/fontello-323401c3/font/fontello.svg +0 -0
  141. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/templates/css/fontello-323401c3/font/fontello.ttf +0 -0
  142. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/templates/css/fontello-323401c3/font/fontello.woff +0 -0
  143. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/templates/css/fontello-323401c3/font/fontello.woff2 +0 -0
  144. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/templates/css/jquery-ui-git.css +0 -0
  145. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/templates/css/jquery-ui.css +0 -0
  146. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/templates/css/jquery.dataTables.css +0 -0
  147. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/templates/html/bulk_rna/base.html +0 -0
  148. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/templates/html/bulk_rna/cells.html +0 -0
  149. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/templates/html/bulk_vdj/base.html +0 -0
  150. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/templates/html/bulk_vdj/count_vdj.html +0 -0
  151. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/templates/html/capture_rna/base.html +0 -0
  152. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/templates/html/capture_rna/count_capture_rna_summary.html +0 -0
  153. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/templates/html/capture_virus/analysis_virus.html +0 -0
  154. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/templates/html/capture_virus/base.html +0 -0
  155. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/templates/html/citeseq/analysis_cite.html +0 -0
  156. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/templates/html/citeseq/base.html +0 -0
  157. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/templates/html/common/img1.html +0 -0
  158. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/templates/html/common/logo.html +0 -0
  159. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/templates/html/dynaseq/base.html +0 -0
  160. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/templates/html/dynaseq/conversion.html +0 -0
  161. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/templates/html/dynaseq/replacement.html +0 -0
  162. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/templates/html/dynaseq/substitution.html +0 -0
  163. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/templates/html/flv_trust4/annotation.html +0 -0
  164. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/templates/html/flv_trust4/base.html +0 -0
  165. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/templates/html/flv_trust4/summarize.html +0 -0
  166. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/templates/html/fusion/analysis_fusion.html +0 -0
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  287. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/utils/__init__.py +0 -0
  288. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/utils/mapping_vdj.py +0 -0
  289. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/utils/mkgtf.py +0 -0
  290. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/vdj/__init__.py +0 -0
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  299. {celescope-2.3.1.dev0 → celescope-2.3.2}/celescope.egg-info/top_level.txt +0 -0
  300. {celescope-2.3.1.dev0 → celescope-2.3.2}/scripts/__init__.py +0 -0
  301. {celescope-2.3.1.dev0 → celescope-2.3.2}/scripts/add_tag.py +0 -0
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  303. {celescope-2.3.1.dev0 → celescope-2.3.2}/scripts/extract_read.py +0 -0
  304. {celescope-2.3.1.dev0 → celescope-2.3.2}/scripts/generate_docs.py +0 -0
  305. {celescope-2.3.1.dev0 → celescope-2.3.2}/scripts/release_local.py +0 -0
  306. {celescope-2.3.1.dev0 → celescope-2.3.2}/scripts/split_fastq.py +0 -0
  307. {celescope-2.3.1.dev0 → celescope-2.3.2}/setup.cfg +0 -0
  308. {celescope-2.3.1.dev0 → celescope-2.3.2}/setup.py +0 -0
  309. {celescope-2.3.1.dev0 → celescope-2.3.2}/tests/__init__.py +0 -0
  310. {celescope-2.3.1.dev0 → celescope-2.3.2}/tests/conftest.py +0 -0
  311. {celescope-2.3.1.dev0 → celescope-2.3.2}/tests/test_function.py +0 -0
  312. {celescope-2.3.1.dev0 → celescope-2.3.2}/tests/test_multi.py +0 -0
  313. {celescope-2.3.1.dev0 → celescope-2.3.2}/tests/unittests/__init__.py +0 -0
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  316. {celescope-2.3.1.dev0 → celescope-2.3.2}/tests/unittests/snp/test_variant_calling.py +0 -0
{celescope-2.3.1.dev0/celescope.egg-info → celescope-2.3.2}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.2
2
2
  Name: celescope
3
- Version: 2.3.1.dev0
3
+ Version: 2.3.2
4
4
  Summary: Single Cell Analysis Pipelines
5
5
  Home-page: https://github.com/singleron-RD/CeleScope
6
6
  Author: zhouyiqi
{celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/__init__.py RENAMED
@@ -1,6 +1,6 @@
1
1
  import os
2
2
 
3
- __VERSION__ = "2.3.1dev"
3
+ __VERSION__ = "2.3.2"
4
4
  __version__ = __VERSION__
5
5
 
6
6
  ASSAY_LIST = [
{celescope-2.3.1.dev0 → celescope-2.3.2}/celescope/tools/parse_chemistry.py RENAMED
@@ -354,7 +354,8 @@ class AutoBulkRNA(Auto):
354
354
  """
355
355
  Returns: chemistry or None
356
356
  """
357
- for chemistry in ["bulk_rna-V1", "bulk_rna-V2", "bulk_rna-bulk_vdj_match"]:
357
+ # V2 9bp linker is ATACGCGGA, which is a valid barcode of V1; so must detect V2 first, otherwise it is a valid V1
358
+ for chemistry in ["bulk_rna-V2", "bulk_rna-V1", "bulk_rna-bulk_vdj_match"]:
358
359
  if self.is_chemistry(seq, chemistry):
359
360
  return chemistry
360
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{celescope-2.3.1.dev0 → celescope-2.3.2/celescope.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.2
2
2
  Name: celescope
3
- Version: 2.3.1.dev0
3
+ Version: 2.3.2
4
4
  Summary: Single Cell Analysis Pipelines
5
5
  Home-page: https://github.com/singleron-RD/CeleScope
6
6
  Author: zhouyiqi
{celescope-2.3.1.dev0 → celescope-2.3.2}/LICENSE RENAMED
File without changes
{celescope-2.3.1.dev0 → celescope-2.3.2}/MANIFEST.in RENAMED
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{celescope-2.3.1.dev0 → celescope-2.3.2}/README.md RENAMED
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