cect 0.2.2__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (393) hide show
  1. cect-0.2.2/.github/workflows/ci-pages.yml +50 -0
  2. cect-0.2.2/.github/workflows/non_omv.yml +49 -0
  3. cect-0.2.2/.gitignore +705 -0
  4. cect-0.2.2/.vscode/settings.json +3 -0
  5. cect-0.2.2/PKG-INFO +44 -0
  6. cect-0.2.2/README.md +10 -0
  7. cect-0.2.2/cect/Analysis.py +153 -0
  8. cect-0.2.2/cect/BrittinDataReader.py +121 -0
  9. cect-0.2.2/cect/CellInfo.py +607 -0
  10. cect-0.2.2/cect/Cells.py +2639 -0
  11. cect-0.2.2/cect/Comparison.py +675 -0
  12. cect-0.2.2/cect/ConnectomeDataset.py +1147 -0
  13. cect-0.2.2/cect/ConnectomeReader.py +220 -0
  14. cect-0.2.2/cect/ConnectomeView.py +582 -0
  15. cect-0.2.2/cect/Cook2019DataReader.py +213 -0
  16. cect-0.2.2/cect/Cook2019HermReader.py +41 -0
  17. cect-0.2.2/cect/Cook2019MaleReader.py +31 -0
  18. cect-0.2.2/cect/Cook2020DataReader.py +219 -0
  19. cect-0.2.2/cect/RipollSanchezDataReader.py +166 -0
  20. cect-0.2.2/cect/RipollSanchezLongRangeReader.py +44 -0
  21. cect-0.2.2/cect/RipollSanchezMidRangeReader.py +43 -0
  22. cect-0.2.2/cect/RipollSanchezShortRangeReader.py +44 -0
  23. cect-0.2.2/cect/SpreadsheetDataReader.py +156 -0
  24. cect-0.2.2/cect/TestDataReader.py +105 -0
  25. cect-0.2.2/cect/UpdatedSpreadsheetDataReader.py +219 -0
  26. cect-0.2.2/cect/UpdatedSpreadsheetDataReader2.py +216 -0
  27. cect-0.2.2/cect/VarshneyDataReader.py +104 -0
  28. cect-0.2.2/cect/WhiteDataReader.py +120 -0
  29. cect-0.2.2/cect/White_A.py +42 -0
  30. cect-0.2.2/cect/White_L4.py +42 -0
  31. cect-0.2.2/cect/White_whole.py +42 -0
  32. cect-0.2.2/cect/WitvlietDataReader.py +110 -0
  33. cect-0.2.2/cect/WitvlietDataReader1.py +35 -0
  34. cect-0.2.2/cect/WitvlietDataReader2.py +35 -0
  35. cect-0.2.2/cect/WitvlietDataReader3.py +23 -0
  36. cect-0.2.2/cect/WitvlietDataReader4.py +23 -0
  37. cect-0.2.2/cect/WitvlietDataReader5.py +23 -0
  38. cect-0.2.2/cect/WitvlietDataReader6.py +23 -0
  39. cect-0.2.2/cect/WitvlietDataReader7.py +23 -0
  40. cect-0.2.2/cect/WitvlietDataReader8.py +23 -0
  41. cect-0.2.2/cect/WormAtlasInfo.py +220 -0
  42. cect-0.2.2/cect/WormNeuroAtlasExtSynReader.py +127 -0
  43. cect-0.2.2/cect/WormNeuroAtlasFuncReader.py +146 -0
  44. cect-0.2.2/cect/WormNeuroAtlasMAReader.py +65 -0
  45. cect-0.2.2/cect/WormNeuroAtlasPepReader.py +67 -0
  46. cect-0.2.2/cect/WormNeuroAtlasReader.py +148 -0
  47. cect-0.2.2/cect/__init__.py +10 -0
  48. cect-0.2.2/cect/data/01022024_neuropeptide_connectome_long_range_model.csv +303 -0
  49. cect-0.2.2/cect/data/01022024_neuropeptide_connectome_mid_range_model.csv +303 -0
  50. cect-0.2.2/cect/data/01022024_neuropeptide_connectome_short_range_model.csv +303 -0
  51. cect-0.2.2/cect/data/08062023_monoamine_connectome.csv +303 -0
  52. cect-0.2.2/cect/data/1-s2.0-S0896627323007560-mmc7.xlsx +0 -0
  53. cect-0.2.2/cect/data/41586_2021_3284_MOESM5_ESM.xlsx +0 -0
  54. cect-0.2.2/cect/data/CElegansNeuronTables.xls +0 -0
  55. cect-0.2.2/cect/data/IndividualNeurons.csv +398 -0
  56. cect-0.2.2/cect/data/Modified celegans db dump.csv +2260 -0
  57. cect-0.2.2/cect/data/NeuronConnectFormatted.xlsx +0 -0
  58. cect-0.2.2/cect/data/SI 5 Connectome adjacency matrices.xlsx +0 -0
  59. cect-0.2.2/cect/data/aconnectome_white_1986_A.csv +1900 -0
  60. cect-0.2.2/cect/data/aconnectome_white_1986_L4.csv +1770 -0
  61. cect-0.2.2/cect/data/aconnectome_white_1986_whole.csv +2962 -0
  62. cect-0.2.2/cect/data/all_cell_info.csv +649 -0
  63. cect-0.2.2/cect/data/cne24932-sup-0004-supinfo4.csv +363 -0
  64. cect-0.2.2/cect/data/cne24932-sup-0005-supinfo5.csv +59 -0
  65. cect-0.2.2/cect/data/herm_full_edgelist.csv +7380 -0
  66. cect-0.2.2/cect/data/herm_full_edgelist_MODIFIED.csv +7395 -0
  67. cect-0.2.2/cect/data/white_1986_jsh.csv +1770 -0
  68. cect-0.2.2/cect/data/white_1986_n2u.csv +1900 -0
  69. cect-0.2.2/cect/data/witvliet_2020_1.xlsx +0 -0
  70. cect-0.2.2/cect/data/witvliet_2020_2.xlsx +0 -0
  71. cect-0.2.2/cect/data/witvliet_2020_3.xlsx +0 -0
  72. cect-0.2.2/cect/data/witvliet_2020_4.xlsx +0 -0
  73. cect-0.2.2/cect/data/witvliet_2020_5.xlsx +0 -0
  74. cect-0.2.2/cect/data/witvliet_2020_6.xlsx +0 -0
  75. cect-0.2.2/cect/data/witvliet_2020_7.xlsx +0 -0
  76. cect-0.2.2/cect/data/witvliet_2020_8.xlsx +0 -0
  77. cect-0.2.2/cect.egg-info/PKG-INFO +44 -0
  78. cect-0.2.2/cect.egg-info/SOURCES.txt +392 -0
  79. cect-0.2.2/cect.egg-info/dependency_links.txt +1 -0
  80. cect-0.2.2/cect.egg-info/requires.txt +38 -0
  81. cect-0.2.2/cect.egg-info/top_level.txt +1 -0
  82. cect-0.2.2/docs/About.md +10 -0
  83. cect-0.2.2/docs/AddDataset.md +22 -0
  84. cect-0.2.2/docs/Albertson_1976.md +10 -0
  85. cect-0.2.2/docs/Altun_2009.md +7 -0
  86. cect-0.2.2/docs/Atanas_2023.md +18 -0
  87. cect-0.2.2/docs/Beets_2023.md +15 -0
  88. cect-0.2.2/docs/Bentley_2016.md +41 -0
  89. cect-0.2.2/docs/Brittin_2021.md +27 -0
  90. cect-0.2.2/docs/Cells.md +1672 -0
  91. cect-0.2.2/docs/Comparison.md +513 -0
  92. cect-0.2.2/docs/Comparison_table.html +495 -0
  93. cect-0.2.2/docs/Cook_2019.md +33 -0
  94. cect-0.2.2/docs/Cook_2020.md +16 -0
  95. cect-0.2.2/docs/Dag_2023.md +11 -0
  96. cect-0.2.2/docs/Durbin_1987.md +18 -0
  97. cect-0.2.2/docs/Fenyves_2020.md +15 -0
  98. cect-0.2.2/docs/Full1_Test_data.md +356 -0
  99. cect-0.2.2/docs/Full1_Test_data_graph.md +354 -0
  100. cect-0.2.2/docs/Full1_Test_data_hiveplot.md +356 -0
  101. cect-0.2.2/docs/Gendrel_2016.md +8 -0
  102. cect-0.2.2/docs/Hall_1991.md +10 -0
  103. cect-0.2.2/docs/Jarrell_2012.md +13 -0
  104. cect-0.2.2/docs/Neurons_Test_data.md +363 -0
  105. cect-0.2.2/docs/Neurons_Test_data_graph.md +360 -0
  106. cect-0.2.2/docs/Neurons_Test_data_hiveplot.md +363 -0
  107. cect-0.2.2/docs/Nonpharyngeal_Test_data.md +363 -0
  108. cect-0.2.2/docs/Nonpharyngeal_Test_data_graph.md +360 -0
  109. cect-0.2.2/docs/Nonpharyngeal_Test_data_hiveplot.md +363 -0
  110. cect-0.2.2/docs/PeptidergicHubs_Test_data.md +363 -0
  111. cect-0.2.2/docs/PeptidergicHubs_Test_data_graph.md +360 -0
  112. cect-0.2.2/docs/PeptidergicHubs_Test_data_hiveplot.md +348 -0
  113. cect-0.2.2/docs/Pereira_2015.md +17 -0
  114. cect-0.2.2/docs/Pharynx_Test_data.md +349 -0
  115. cect-0.2.2/docs/Pharynx_Test_data_graph.md +348 -0
  116. cect-0.2.2/docs/Pharynx_Test_data_hiveplot.md +349 -0
  117. cect-0.2.2/docs/Python.md +13 -0
  118. cect-0.2.2/docs/Randi_2023.md +28 -0
  119. cect-0.2.2/docs/Resources.md +67 -0
  120. cect-0.2.2/docs/RipollSanchez_2023.md +24 -0
  121. cect-0.2.2/docs/Serrano_2013.md +12 -0
  122. cect-0.2.2/docs/Social_Test_data.md +356 -0
  123. cect-0.2.2/docs/Social_Test_data_graph.md +354 -0
  124. cect-0.2.2/docs/Social_Test_data_hiveplot.md +356 -0
  125. cect-0.2.2/docs/Taylor_2021.md +17 -0
  126. cect-0.2.2/docs/Test_data.md +356 -0
  127. cect-0.2.2/docs/Test_data_graph.md +354 -0
  128. cect-0.2.2/docs/Test_data_hiveplot.md +356 -0
  129. cect-0.2.2/docs/Timeline.md +68 -0
  130. cect-0.2.2/docs/Varshney_2011.md +60 -0
  131. cect-0.2.2/docs/White_1986.md +32 -0
  132. cect-0.2.2/docs/Witvliet_2021.md +61 -0
  133. cect-0.2.2/docs/Yemini_2021.md +12 -0
  134. cect-0.2.2/docs/api/cect/Analysis.md +1 -0
  135. cect-0.2.2/docs/api/cect/BrittinDataReader.md +1 -0
  136. cect-0.2.2/docs/api/cect/CellInfo.md +1 -0
  137. cect-0.2.2/docs/api/cect/Cells.md +1 -0
  138. cect-0.2.2/docs/api/cect/Comparison.md +1 -0
  139. cect-0.2.2/docs/api/cect/ConnectomeDataset.md +1 -0
  140. cect-0.2.2/docs/api/cect/ConnectomeReader.md +1 -0
  141. cect-0.2.2/docs/api/cect/ConnectomeView.md +1 -0
  142. cect-0.2.2/docs/api/cect/Cook2019DataReader.md +1 -0
  143. cect-0.2.2/docs/api/cect/Cook2019HermReader.md +1 -0
  144. cect-0.2.2/docs/api/cect/Cook2019MaleReader.md +1 -0
  145. cect-0.2.2/docs/api/cect/Cook2020DataReader.md +1 -0
  146. cect-0.2.2/docs/api/cect/RipollSanchezDataReader.md +1 -0
  147. cect-0.2.2/docs/api/cect/RipollSanchezLongRangeReader.md +1 -0
  148. cect-0.2.2/docs/api/cect/RipollSanchezMidRangeReader.md +1 -0
  149. cect-0.2.2/docs/api/cect/RipollSanchezShortRangeReader.md +1 -0
  150. cect-0.2.2/docs/api/cect/SpreadsheetDataReader.md +1 -0
  151. cect-0.2.2/docs/api/cect/TestDataReader.md +1 -0
  152. cect-0.2.2/docs/api/cect/UpdatedSpreadsheetDataReader.md +1 -0
  153. cect-0.2.2/docs/api/cect/UpdatedSpreadsheetDataReader2.md +1 -0
  154. cect-0.2.2/docs/api/cect/VarshneyDataReader.md +1 -0
  155. cect-0.2.2/docs/api/cect/WhiteDataReader.md +1 -0
  156. cect-0.2.2/docs/api/cect/White_A.md +1 -0
  157. cect-0.2.2/docs/api/cect/White_L4.md +1 -0
  158. cect-0.2.2/docs/api/cect/White_whole.md +1 -0
  159. cect-0.2.2/docs/api/cect/WitvlietDataReader.md +1 -0
  160. cect-0.2.2/docs/api/cect/WitvlietDataReader1.md +1 -0
  161. cect-0.2.2/docs/api/cect/WitvlietDataReader2.md +1 -0
  162. cect-0.2.2/docs/api/cect/WitvlietDataReader3.md +1 -0
  163. cect-0.2.2/docs/api/cect/WitvlietDataReader4.md +1 -0
  164. cect-0.2.2/docs/api/cect/WitvlietDataReader5.md +1 -0
  165. cect-0.2.2/docs/api/cect/WitvlietDataReader6.md +1 -0
  166. cect-0.2.2/docs/api/cect/WitvlietDataReader7.md +1 -0
  167. cect-0.2.2/docs/api/cect/WitvlietDataReader8.md +1 -0
  168. cect-0.2.2/docs/api/cect/WormAtlasInfo.md +1 -0
  169. cect-0.2.2/docs/api/cect/WormNeuroAtlasExtSynReader.md +1 -0
  170. cect-0.2.2/docs/api/cect/WormNeuroAtlasFuncReader.md +1 -0
  171. cect-0.2.2/docs/api/cect/WormNeuroAtlasMAReader.md +1 -0
  172. cect-0.2.2/docs/api/cect/WormNeuroAtlasPepReader.md +1 -0
  173. cect-0.2.2/docs/api/cect/WormNeuroAtlasReader.md +1 -0
  174. cect-0.2.2/docs/api/cect/index.md +1 -0
  175. cect-0.2.2/docs/api/summary.md +41 -0
  176. cect-0.2.2/docs/assets/GLR_cell_Chemical_conns_in_hist.json +1109 -0
  177. cect-0.2.2/docs/assets/GLR_cell_Electrical_conns_hist.json +1057 -0
  178. cect-0.2.2/docs/assets/Test_Escape_Chemical_Exc.json +1187 -0
  179. cect-0.2.2/docs/assets/Test_Escape_Chemical_Exc.png +0 -0
  180. cect-0.2.2/docs/assets/Test_Escape_Chemical_Exc_graph.json +1080 -0
  181. cect-0.2.2/docs/assets/Test_Escape_Chemical_Exc_graph.png +0 -0
  182. cect-0.2.2/docs/assets/Test_Escape_Chemical_Exc_hiveplot.json +1482 -0
  183. cect-0.2.2/docs/assets/Test_Escape_Chemical_Exc_hiveplot.png +0 -0
  184. cect-0.2.2/docs/assets/Test_Escape_Chemical_Inh.json +1187 -0
  185. cect-0.2.2/docs/assets/Test_Escape_Chemical_Inh.png +0 -0
  186. cect-0.2.2/docs/assets/Test_Escape_Chemical_Inh_graph.json +1088 -0
  187. cect-0.2.2/docs/assets/Test_Escape_Chemical_Inh_graph.png +0 -0
  188. cect-0.2.2/docs/assets/Test_Escape_Chemical_Inh_hiveplot.json +1398 -0
  189. cect-0.2.2/docs/assets/Test_Escape_Chemical_Inh_hiveplot.png +0 -0
  190. cect-0.2.2/docs/assets/Test_Escape_Electrical.json +1187 -0
  191. cect-0.2.2/docs/assets/Test_Escape_Electrical.png +0 -0
  192. cect-0.2.2/docs/assets/Test_Escape_Electrical_graph.json +1088 -0
  193. cect-0.2.2/docs/assets/Test_Escape_Electrical_graph.png +0 -0
  194. cect-0.2.2/docs/assets/Test_Escape_Electrical_hiveplot.json +1414 -0
  195. cect-0.2.2/docs/assets/Test_Escape_Electrical_hiveplot.png +0 -0
  196. cect-0.2.2/docs/assets/Test_Full1_Chemical.json +1259 -0
  197. cect-0.2.2/docs/assets/Test_Full1_Chemical.png +0 -0
  198. cect-0.2.2/docs/assets/Test_Full1_Chemical_graph.json +1205 -0
  199. cect-0.2.2/docs/assets/Test_Full1_Chemical_graph.png +0 -0
  200. cect-0.2.2/docs/assets/Test_Full1_Chemical_hiveplot.json +1686 -0
  201. cect-0.2.2/docs/assets/Test_Full1_Chemical_hiveplot.png +0 -0
  202. cect-0.2.2/docs/assets/Test_Full1_Electrical.json +1259 -0
  203. cect-0.2.2/docs/assets/Test_Full1_Electrical.png +0 -0
  204. cect-0.2.2/docs/assets/Test_Full1_Electrical_graph.json +1121 -0
  205. cect-0.2.2/docs/assets/Test_Full1_Electrical_graph.png +0 -0
  206. cect-0.2.2/docs/assets/Test_Full1_Electrical_hiveplot.json +1498 -0
  207. cect-0.2.2/docs/assets/Test_Full1_Electrical_hiveplot.png +0 -0
  208. cect-0.2.2/docs/assets/Test_Neurons_Chemical_Exc.json +93388 -0
  209. cect-0.2.2/docs/assets/Test_Neurons_Chemical_Exc.png +0 -0
  210. cect-0.2.2/docs/assets/Test_Neurons_Chemical_Exc_graph.json +3260 -0
  211. cect-0.2.2/docs/assets/Test_Neurons_Chemical_Exc_graph.png +0 -0
  212. cect-0.2.2/docs/assets/Test_Neurons_Chemical_Exc_hiveplot.json +4278 -0
  213. cect-0.2.2/docs/assets/Test_Neurons_Chemical_Exc_hiveplot.png +0 -0
  214. cect-0.2.2/docs/assets/Test_Neurons_Chemical_Inh.json +93388 -0
  215. cect-0.2.2/docs/assets/Test_Neurons_Chemical_Inh.png +0 -0
  216. cect-0.2.2/docs/assets/Test_Neurons_Chemical_Inh_graph.json +3089 -0
  217. cect-0.2.2/docs/assets/Test_Neurons_Chemical_Inh_graph.png +0 -0
  218. cect-0.2.2/docs/assets/Test_Neurons_Chemical_Inh_hiveplot.json +3746 -0
  219. cect-0.2.2/docs/assets/Test_Neurons_Chemical_Inh_hiveplot.png +0 -0
  220. cect-0.2.2/docs/assets/Test_Neurons_Electrical.json +93388 -0
  221. cect-0.2.2/docs/assets/Test_Neurons_Electrical.png +0 -0
  222. cect-0.2.2/docs/assets/Test_Neurons_Electrical_graph.json +3135 -0
  223. cect-0.2.2/docs/assets/Test_Neurons_Electrical_graph.png +0 -0
  224. cect-0.2.2/docs/assets/Test_Neurons_Electrical_hiveplot.json +3830 -0
  225. cect-0.2.2/docs/assets/Test_Neurons_Electrical_hiveplot.png +0 -0
  226. cect-0.2.2/docs/assets/Test_PeptidergicHubs_Chemical_Exc.json +934 -0
  227. cect-0.2.2/docs/assets/Test_PeptidergicHubs_Chemical_Exc.png +0 -0
  228. cect-0.2.2/docs/assets/Test_PeptidergicHubs_Chemical_Exc_graph.json +1118 -0
  229. cect-0.2.2/docs/assets/Test_PeptidergicHubs_Chemical_Exc_graph.png +0 -0
  230. cect-0.2.2/docs/assets/Test_PeptidergicHubs_Chemical_Inh.json +934 -0
  231. cect-0.2.2/docs/assets/Test_PeptidergicHubs_Chemical_Inh.png +0 -0
  232. cect-0.2.2/docs/assets/Test_PeptidergicHubs_Chemical_Inh_graph.json +984 -0
  233. cect-0.2.2/docs/assets/Test_PeptidergicHubs_Chemical_Inh_graph.png +0 -0
  234. cect-0.2.2/docs/assets/Test_PeptidergicHubs_Electrical.json +934 -0
  235. cect-0.2.2/docs/assets/Test_PeptidergicHubs_Electrical.png +0 -0
  236. cect-0.2.2/docs/assets/Test_PeptidergicHubs_Electrical_graph.json +1030 -0
  237. cect-0.2.2/docs/assets/Test_PeptidergicHubs_Electrical_graph.png +0 -0
  238. cect-0.2.2/docs/assets/Test_Pharynx_Chemical_Exc.json +1382 -0
  239. cect-0.2.2/docs/assets/Test_Pharynx_Chemical_Exc.png +0 -0
  240. cect-0.2.2/docs/assets/Test_Pharynx_Chemical_Exc_graph.json +1096 -0
  241. cect-0.2.2/docs/assets/Test_Pharynx_Chemical_Exc_graph.png +0 -0
  242. cect-0.2.2/docs/assets/Test_Pharynx_Chemical_Exc_hiveplot.json +1470 -0
  243. cect-0.2.2/docs/assets/Test_Pharynx_Chemical_Exc_hiveplot.png +0 -0
  244. cect-0.2.2/docs/assets/Test_Raw_Chemical.json +1372 -0
  245. cect-0.2.2/docs/assets/Test_Raw_Chemical.png +0 -0
  246. cect-0.2.2/docs/assets/Test_Raw_Chemical_graph.json +1333 -0
  247. cect-0.2.2/docs/assets/Test_Raw_Chemical_graph.png +0 -0
  248. cect-0.2.2/docs/assets/Test_Raw_Chemical_hiveplot.json +2178 -0
  249. cect-0.2.2/docs/assets/Test_Raw_Chemical_hiveplot.png +0 -0
  250. cect-0.2.2/docs/assets/Test_Raw_Electrical.json +1372 -0
  251. cect-0.2.2/docs/assets/Test_Raw_Electrical.png +0 -0
  252. cect-0.2.2/docs/assets/Test_Raw_Electrical_graph.json +1147 -0
  253. cect-0.2.2/docs/assets/Test_Raw_Electrical_graph.png +0 -0
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  299. cect-0.2.2/docs/assets/motor_neuron_Chemical_conns_in_hist.json +6023 -0
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  301. cect-0.2.2/docs/assets/motor_neuron_Electrical_conns_hist.json +6023 -0
  302. cect-0.2.2/docs/assets/neuron_with_unknown_function_Chemical_conns_in_hist.json +877 -0
  303. cect-0.2.2/docs/assets/neuron_with_unknown_function_Electrical_conns_hist.json +877 -0
  304. cect-0.2.2/docs/assets/odd_numbered_pharyngeal_muscle_Chemical_conns_in_hist.json +959 -0
  305. cect-0.2.2/docs/assets/odd_numbered_pharyngeal_muscle_Electrical_conns_hist.json +925 -0
  306. cect-0.2.2/docs/assets/pharyngeal_epithelium_Chemical_conns_in_hist.json +955 -0
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  308. cect-0.2.2/docs/assets/polymodal_neuron_Chemical_conns_in_hist.json +1015 -0
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  312. cect-0.2.2/docs/assets/posterior_outer_longitudinal_muscles_Chemical_conns_in_hist.json +841 -0
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  319. cect-0.2.2/docs/assets/sensory_neuron_Electrical_conns_hist.json +6371 -0
  320. cect-0.2.2/docs/assets/sheath_cell_other_than_amphid_sheath_and_phasmid_Chemical_conns_in_hist.json +1087 -0
  321. cect-0.2.2/docs/assets/sheath_cell_other_than_amphid_sheath_and_phasmid_Electrical_conns_hist.json +911 -0
  322. cect-0.2.2/docs/assets/sphincter_and_anal_depressor_muscle_Chemical_conns_in_hist.json +863 -0
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  326. cect-0.2.2/docs/assets/spicule_retractor_muscles_Electrical_conns_hist.json +845 -0
  327. cect-0.2.2/docs/assets/uterine_muscle_Electrical_conns_hist.json +853 -0
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  388. cect-0.2.2/docs/index.md +376 -0
  389. cect-0.2.2/docs/stylesheets/extra.css +40 -0
  390. cect-0.2.2/mkdocs.yml +766 -0
  391. cect-0.2.2/pyproject.toml +9 -0
  392. cect-0.2.2/setup.cfg +135 -0
  393. cect-0.2.2/test.sh +49 -0
cect-0.2.2/.github/workflows/ci-pages.yml ADDED
@@ -0,0 +1,50 @@
1
+ name: ci-pages
2
+ on:
3
+ push:
4
+ branches:
5
+ - main
6
+ permissions:
7
+ contents: write
8
+ jobs:
9
+ deploy:
10
+ runs-on: ubuntu-latest
11
+ steps:
12
+ - uses: actions/checkout@v4
13
+
14
+ - name: Configure Git Credentials
15
+ run: |
16
+ git config user.name github-actions[bot]
17
+ git config user.email 41898282+github-actions[bot]@users.noreply.github.com
18
+
19
+ - uses: actions/setup-python@v5
20
+ with:
21
+ python-version: 3.x
22
+
23
+ - run: echo "cache_id=$(date --utc '+%V')" >> $GITHUB_ENV
24
+
25
+ - uses: actions/cache@v4
26
+ with:
27
+ key: mkdocs-material-${{ env.cache_id }}
28
+ path: .cache
29
+ restore-keys: |
30
+ mkdocs-material-
31
+
32
+ - name: Install HDF5 for pytables on macos-latest
33
+ if: ${{ matrix.runs-on == 'macos-latest' }}
34
+ run: |
35
+ brew install hdf5
36
+
37
+
38
+ - name: Install full package
39
+ run: |
40
+ pip install .[all]
41
+ pip list
42
+
43
+
44
+ - name: Run test script to regenerate
45
+ run: |
46
+ ./test.sh
47
+ ls -alt docs/
48
+ ls -alt docs/assets/
49
+
50
+ - run: mkdocs gh-deploy --force
cect-0.2.2/.github/workflows/non_omv.yml ADDED
@@ -0,0 +1,49 @@
1
+ name: Non-OMV-tests
2
+
3
+ on:
4
+ push:
5
+ branches: [ main, development, experimental, ow* ]
6
+ pull_request:
7
+ branches: [ main, development, experimental, ow* ]
8
+
9
+ jobs:
10
+ build:
11
+
12
+ runs-on: ${{ matrix.runs-on }}
13
+ strategy:
14
+ fail-fast: false
15
+ matrix:
16
+ runs-on: [ubuntu-latest, macos-latest, windows-latest ]
17
+ python-version: [ 3.8, 3.9, "3.11" ]
18
+ exclude:
19
+ - runs-on: macos-latest
20
+ python-version: "3.8"
21
+
22
+ steps:
23
+ - uses: actions/checkout@v4
24
+
25
+ - name: Set up Python ${{ matrix.python-version }}
26
+ uses: actions/setup-python@v5
27
+ with:
28
+ python-version: ${{ matrix.python-version }}
29
+
30
+ - name: Install HDF5 for pytables on macos-latest
31
+ if: ${{ matrix.runs-on == 'macos-latest' }}
32
+ run: |
33
+ brew install hdf5
34
+
35
+
36
+ - name: Install package
37
+ run: |
38
+ pip install .[all]
39
+ pip list
40
+
41
+
42
+ - name: Run quick test script
43
+ run: |
44
+ ./test.sh -q
45
+
46
+ - name: Final version info
47
+ run: |
48
+ pip list
49
+ env