cavapy 2.0.3__tar.gz → 2.0.4__tar.gz

cavapy-2.0.4/LICENSE

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cavapy-2.0.4/PKG-INFO

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+Metadata-Version: 2.4
+Name: cavapy
+Version: 2.0.4
+Summary: CAVA Python package. Retrive climate data.
+License: MIT
+License-File: LICENSE
+Author: Riccardo Soldan
+Author-email: riccardosoldan@hotmail.it
+Requires-Python: >=3.11,<4.0
+Classifier: License :: OSI Approved :: MIT License
+Classifier: Operating System :: OS Independent
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: Programming Language :: Python :: 3.14
+Requires-Dist: bottleneck
+Requires-Dist: cartopy
+Requires-Dist: dask
+Requires-Dist: llvmlite
+Requires-Dist: matplotlib
+Requires-Dist: netcdf4
+Requires-Dist: pydap
+Requires-Dist: seaborn
+Requires-Dist: tqdm
+Requires-Dist: xclim
+Requires-Dist: xsdba
+Project-URL: Repository, https://github.com/Risk-Team/cavapy
+Description-Content-Type: text/markdown
+
+<p align="center">
+  <img src="figures/cavapy_logo.svg" alt="cavapy logo" width="760">
+</p>
+
+<p align="center">
+  <a href="https://pypi.org/project/cavapy/"><img src="https://img.shields.io/pypi/v/cavapy?label=PyPI&style=for-the-badge" alt="PyPI version"></a>
+  <a href="https://pepy.tech/project/cavapy"><img src="https://img.shields.io/pepy/dt/cavapy?style=for-the-badge&label=Downloads" alt="Total downloads"></a>
+  <img src="https://img.shields.io/badge/Python-3.11%2B-1f6feb?style=for-the-badge" alt="Python 3.11+">
+</p>
+
+<p align="center">
+  Retrieve, subset, and process CORDEX-CORE and ERA5 climate data directly from THREDDS/OPeNDAP.
+</p>
+
+<p align="center">
+  <a href="https://github.com/risk-team/cavapy/stargazers">Star this project on GitHub</a>
+</p>
+
+---
+
+## What is cavapy?
+
+Working with CORDEX-CORE climate projections normally means downloading terabytes of raw NetCDF files, reprojecting from rotated polar coordinates to regular lat/lon, writing boilerplate to handle non-Gregorian calendars, converting units, subsetting grids, wrangling multi-model ensembles, and layering bias correction on top. All before you can run a single analysis.
+
+`cavapy` collapses all of that into one function call.
+
+It streams only the spatial slice you need over OPeNDAP (no local archive required) and returns analysis-ready `xarray.DataArray` objects with consistent units, a standard Gregorian calendar, and optional bias correction already applied.
+
+It is part of the [CAVA](https://risk-team.github.io/CAVAanalytics/articles/CAVA.html) (Climate and Agriculture Risk Visualization and Assessment) ecosystem, a joint initiative of FAO, the University of Cantabria, the University of Cape Town, and Predictia.
+
+---
+
+## What gets handled automatically
+
+A single `get_climate_data()` call orchestrates a full pipeline:
+
+| Step | What happens |
+| --- | --- |
+| **Inventory lookup** | Resolves the correct OPeNDAP URL(s) for your GCM/RCM/RCP/domain combination from a live THREDDS inventory |
+| **Spatial subsetting** | Streams only the grid cells inside your country or bounding box — no full-file downloads |
+| **Country → bbox** | Converts a country name to a precise bounding box using Natural Earth shapefiles |
+| **Unit conversion** | K → °C for temperature; kg m⁻² s⁻¹ → mm/day for precipitation; J/m² → W/m² for solar radiation; 10 m → 2 m for wind speed |
+| **Regridding** | CORDEX outputs are natively in rotated polar coordinates; the data served here has already been regridded to a regular lat/lon grid, so standard spatial operations work out of the box |
+| **Calendar harmonization** | Converts 360-day and other non-Gregorian CORDEX calendars to Gregorian, filling gaps with NaN |
+| **Parallelization** | Variables are fetched in parallel processes; within each process, threaded downloads handle multi-file retrieval |
+| **Fault tolerance** | OPeNDAP connections retry up to 3 times with backoff; C-level noise is suppressed on intermediate attempts |
+| **Bias correction** | ERA5 is automatically fetched as the reference; EQM is trained and applied — no external tools needed |
+| **Domain validation** | If your bounding box falls outside the chosen CORDEX domain, a corrected domain is suggested |
+
+---
+
+## Data Coverage
+
+### Sources
+
+- CORDEX-CORE regional climate simulations (25 km)
+- ERA5 reanalysis (used directly and as the reference for bias correction)
+
+Data is hosted on the University of Cantabria THREDDS infrastructure.
+
+### Available datasets
+
+- **`CORDEX-CORE`** — original model outputs. Use this when you want raw projections or when you will apply your own post-processing.
+- **`CORDEX-CORE-BC`** — pre-bias-corrected outputs. The full CORDEX-CORE archive was corrected against ERA5 reanalysis using the [ISIMIP3 methodology](https://www.isimip.org/documents/413/ISIMIP3b_bias_adjustment_fact_sheet_GCMs_v2.pdf) (trend-preserving quantile mapping). Use this dataset when you need a consistent, ready-to-use ensemble with no additional processing.
+
+### Available variables
+
+| Variable | Description | Units |
+| --- | --- | --- |
+| `tas` | Daily mean temperature | °C |
+| `tasmax` | Daily maximum temperature | °C |
+| `tasmin` | Daily minimum temperature | °C |
+| `pr` | Daily precipitation | mm/day |
+| `hurs` | Daily relative humidity | % |
+| `sfcWind` | Daily wind speed at 2 m | m/s |
+| `rsds` | Daily solar radiation | W/m² |
+
+### Supported domains and scenario/model options
+
+- **Domains**: `NAM-22`, `EUR-22`, `AFR-22`, `EAS-22`, `SEA-22`, `WAS-22`, `AUS-22`, `SAM-22`, `CAM-22`
+- **RCPs**: `rcp26`, `rcp85`
+- **GCMs**: `MOHC`, `MPI`, `NCC`
+- **RCMs**: `REMO`, `Reg`
+
+---
+
+## Installation
+
+```bash
+conda create -n cavapy "python>=3.11"
+conda activate cavapy
+pip install cavapy
+```
+
+---
+
+## Quick Start
+
+### 1) Pre-bias-corrected projections (recommended)
+
+Uses `CORDEX-CORE-BC`: the full CORDEX archive already corrected against ERA5 using the ISIMIP3 methodology. No further correction is applied at download time.
+
+```python
+import cavapy
+
+togo = cavapy.get_climate_data(
+    country="Togo",
+    variables=["tasmax", "pr"],
+    cordex_domain="AFR-22",
+    rcp="rcp26",
+    gcm="MPI",
+    rcm="REMO",
+    years_up_to=2030,
+    dataset="CORDEX-CORE-BC",
+)
+# Returns: {"tasmax": xr.DataArray, "pr": xr.DataArray}
+```
+
+### 2) Original CORDEX-CORE with on-the-fly bias correction
+
+When `bias_correction=True`, cavapy automatically fetches ERA5 for the historical period and applies **Empirical Quantile Mapping (EQM)** via [xsdba](https://xsdba.readthedocs.io). Historical bias correction uses leave-one-out cross-validation to avoid overfitting. Multiplicative scaling is applied for precipitation, wind, and radiation; additive for temperature and humidity. This is useful when you need custom period or region coverage beyond the pre-corrected archive.
+
+```python
+import cavapy
+
+togo = cavapy.get_climate_data(
+    country="Togo",
+    variables=["tasmax", "pr"],
+    cordex_domain="AFR-22",
+    rcp="rcp26",
+    gcm="MPI",
+    rcm="REMO",
+    years_up_to=2030,
+    bias_correction=True,
+    dataset="CORDEX-CORE",
+)
+```
+
+### 3) ERA5 observations only
+
+```python
+import cavapy
+
+era5 = cavapy.get_climate_data(
+    country="Togo",
+    variables=["tasmax", "pr"],
+    obs=True,
+    years_obs=range(1980, 2019),
+)
+```
+
+---
+
+## Core Workflows
+
+### Projections + historical baseline
+
+Setting `historical=True` fetches the 1980–2005 historical simulation run and concatenates it with the projection period, giving a continuous time series.
+
+```python
+import cavapy
+
+data = cavapy.get_climate_data(
+    country="Afghanistan",
+    variables=["tasmax", "pr"],
+    cordex_domain="WAS-22",
+    rcp="rcp85",
+    gcm="NCC",
+    rcm="REMO",
+    years_up_to=2030,
+    historical=True,
+    dataset="CORDEX-CORE-BC",
+)
+```
+
+### Multi-model ensemble
+
+Pass lists (or `None` for all) to `rcp`, `gcm`, and `rcm`. Invalid combinations for the domain are skipped automatically with a warning, rather than raising an error.
+
+```python
+import cavapy
+
+multi = cavapy.get_climate_data(
+    country="Togo",
+    cordex_domain="AFR-22",
+    rcp=["rcp26", "rcp85"],
+    gcm=["MPI", "MOHC"],
+    rcm=["Reg", "REMO"],
+    years_up_to=2030,
+    historical=True,
+    dataset="CORDEX-CORE-BC",
+)
+```
+
+The return structure for multi-combination requests is a nested dict:
+
+```python
+multi[rcp][f"{gcm}-{rcm}"][variable]  # -> xarray.DataArray
+```
+
+### Custom bounding box
+
+```python
+import cavapy
+
+data = cavapy.get_climate_data(
+    country=None,
+    xlim=(30.0, 42.0),
+    ylim=(3.0, 15.0),
+    cordex_domain="AFR-22",
+    rcp="rcp85",
+    gcm="MPI",
+    rcm="REMO",
+    years_up_to=2050,
+    buffer=1,  # expand bbox by 1 degree on each side
+)
+```
+
+---
+
+## Parallelization
+
+`get_climate_data()` uses two levels of concurrency:
+
+- **Single model/scenario**: variables are processed in parallel across processes (default: one per variable), with threaded downloads inside each process
+- **Multiple models/scenarios**: combo × variable tasks are distributed across a global process pool (default cap: 6 processes); a live progress bar tracks completion
+- Sequential mode is used when `num_processes <= 1` or only one variable is requested
+
+### macOS and Windows scripts
+
+On macOS and Windows, Python starts multiprocessing workers with the `spawn` method. This means each worker imports the script again before running its task. If `get_climate_data()` is called at the top level of a `.py` script, that import re-runs the same call while Python is still starting the worker process, which can raise a multiprocessing bootstrapping `RuntimeError`.
+
+When using multiple variables or multi-model requests in a script on macOS or Windows, put the call behind Python's standard multiprocessing entry-point guard:
+
+```python
+import cavapy
+
+
+def main():
+    togo = cavapy.get_climate_data(
+        country="Togo",
+        variables=["tasmax", "pr"],
+        cordex_domain="AFR-22",
+        rcp="rcp26",
+        gcm="MPI",
+        rcm="REMO",
+        years_up_to=2030,
+        dataset="CORDEX-CORE-BC",
+    )
+    return togo
+
+
+if __name__ == "__main__":
+    main()
+```
+
+For a quick unguarded script, use `num_processes=1` or request a single variable to run sequentially.
+
+---
+
+## Plotting
+
+`cavapy` includes built-in plotting helpers that work directly on the returned DataArrays.
+
+### Spatial map
+
+```python
+import cavapy
+
+data = cavapy.get_climate_data(country="Togo", obs=True, years_obs=range(1990, 2011))
+
+fig = cavapy.plot_spatial_map(
+    data["tasmax"],
+    time_period=(2000, 2010),
+    title="Mean Max Temperature 2000-2010",
+    cmap="Reds",
+)
+```
+
+![Spatial temperature map](figures/spatial_map_temperature.png)
+
+### Time series
+
+```python
+fig = cavapy.plot_time_series(
+    data["pr"],
+    title="Precipitation Time Series - Togo (1990-2011)",
+    trend_line=True,
+    ylabel="Annual Precipitation (mm)",
+    aggregation="sum",
+    figsize=(12, 6),
+)
+```
+
+![Precipitation time series](figures/time_series_precipitation.png)
+
+For advanced visualization and reporting, see [CAVAanalytics](https://risk-team.github.io/CAVAanalytics/).
+
+---
+
+## Operational Notes
+
+- Check [GitHub issues](https://github.com/risk-team/cavapy/issues) for data server outages or announcements. cavapy fetches these automatically at startup.
+- Set `CAVAPY_NO_ANNOUNCEMENTS=1` to disable startup announcements in scripts or production runs.
+
+---
+
+## Citation and License
+
+- License: [MIT](LICENSE)
+- Package metadata and build details: [pyproject.toml](pyproject.toml)
+